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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008112 ID=TCONS_00008112|Name=TCONS_00008112|organism=Clytia hemisphaerica|type=transcript|length=1026bpRun BLAST on NCBI transcript from alignment at sc0000082:312978..331625+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00008112 ID=TCONS_00008112|Name=TCONS_00008112|organism=Clytia hemisphaerica|type=transcript|length=18648bp|location=Sequence derived from alignment at sc0000082:312978..331625+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00008112 vs. Swiss-Prot (Human)
Match: KIF3C (Kinesin-like protein KIF3C OS=Homo sapiens GN=KIF3C PE=1 SV=3) HSP 1 Score: 93.5893 bits (231), Expect = 8.773e-21 Identity = 58/171 (33.92%), Postives = 82/171 (47.95%), Query Frame = 2
Query: 539 SNRVKVYVRVRPFSKDDKL---RKITNSPFNVSQDATQLHMFADEKGHSEKTYTFDHVFNTEDDNQTVSEALTQPLVHSAMNGFNGTLMAYGQTGAGKTFSLMSE------NGITKTMIDKCFTQIFDDQKHNYKVTVSYLQIYQEKIFDLLSGVNTNNKADLAIRENPRT 1024
S +KV R RP S+ ++ +I + Q L G KT+TFD V++ + + +PL+ S + GFNGT+ AYGQTG GKT+++ G+ + FT I Q Y V SYL+IYQE+I DLLS L ++ENP T
Sbjct: 8 SEALKVVARCRPLSRKEEAAGHEQILTMDVKLGQ--VTLRNPRAAPGELPKTFTFDAVYDASSKQADLYDETVRPLIDSVLQGFNGTVFAYGQTGTGKTYTMQGTWVEPELRGVIPNAFEHIFTHISRSQNQQYLVRASYLEIYQEEIRDLLS---KEPGKRLELKENPET 173 The following BLAST results are available for this feature:
BLAST of TCONS_00008112 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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