|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008106 ID=TCONS_00008106|Name=TCONS_00008106|organism=Clytia hemisphaerica|type=transcript|length=2366bpRun BLAST on NCBI protein sequence of TCONS_00008106-protein >TCONS_00008106-protein ID=TCONS_00008106-protein|Name=TCONS_00008106-protein|organism=Clytia hemisphaerica|type=polypeptide|length=621bp QRSIVKTMSTKNSKKNRKSTGRERWFHPGATNSQAEEILNKNGVDGSFLVRun BLAST on NCBI transcript from alignment at sc0000082:247427..258046+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00008106 ID=TCONS_00008106|Name=TCONS_00008106|organism=Clytia hemisphaerica|type=transcript|length=10620bp|location=Sequence derived from alignment at sc0000082:247427..258046+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000082:247427..258046+ >TCONS_00008106 ID=TCONS_00008106|Name=TCONS_00008106|organism=Clytia hemisphaerica|type=CDS|length=31722bp|location=Sequence derived from alignment at sc0000082:247427..258046+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00008106 vs. Swiss-Prot (Human)
Match: PTN11 (Tyrosine-protein phosphatase non-receptor type 11 OS=Homo sapiens GN=PTPN11 PE=1 SV=2) HSP 1 Score: 479.174 bits (1232), Expect = 5.514e-159 Identity = 265/555 (47.75%), Postives = 347/555 (62.52%), Query Frame = 1
Query: 70 RWFHPGATNSQAEEILNKNGVDGSFLVRPSESTTGDFTISVRHKGEVTNIKIQNDGDSFSIKGESEFQFATLSTLVEHYMAKPKSIKEKKGGFIELLYPIRSTDPTSERWFHGRLSSKECERLLLAKGKQGSYLVRESQSQPGQFALAVRC-------NNG---VQQVIITHKEGKFAIKSGASFSSLSDLIDYYVDKPKLRDIKDGSPIKLREPYQSSSFTVTSIEDRIRVLRK---ENKRGVTGFREEFELLNRFDQSETAYSTHAGSMEENKWKNRYKNILPYDHSRVMLKGEKTKDVSRDYINANYINADLKTW------KTRYIAAQGCLPNTCSDFWLMLHQHNVNVIVMLTNLEEKGKNKCAKYWPDLGLSEEYGRIIVDNMLEHKSNSFVVRELRVIDQEKPKKQ---PMMVYQYHFTEWPDHGVSEDPGIILGLLNEIHLKHESLSRNSPIVVHCSAGIGRTGTVMAIDILMHLIDEKGIDSEIDILRTCQLLRSERSGMVQTEVQYRFVYEAVKHYLSTEGTREIAKKKQERTGSVKTSYGNINF 1668
RWFHP T +AE +L GVDGSFL RPS+S GDFT+SVR G VT+IKIQN GD + + G +FATL+ LV++YM +KEK G IEL YP+ DPTSERWFHG LS KE E+LL KGK GS+LVRESQS PG F L+VR N+G V V+I +E K+ + G F SL+DL+++Y P + + G+ ++L++P ++ IE R+R L K + GF EEFE L + + + YS G +ENK KNRYKNILP+DH+RV+L + DYINAN I + +T K YIA QGCL NT +DFW M+ Q N VIVM T E+GK+KC KYWPD +EYG + V N+ E ++ + +REL++ + Q V+QYHF WPDHGV DPG +L L E+H K ES+ P+VVHCSAGIGRTGT + IDIL+ +I EKG+D +ID+ +T Q++RS+RSGMVQTE QYRF+Y AV+HY+ T R ++K +R G Y NI +
Sbjct: 5 RWFHPNITGVEAENLLLTRGVDGSFLARPSKSNPGDFTLSVRRNGAVTHIKIQNTGDYYDLYGGE--KFATLAELVQYYMEHHGQLKEKNGDVIELKYPLNCADPTSERWFHGHLSGKEAEKLLTEKGKHGSFLVRESQSHPGDFVLSVRTGDDKGESNDGKSKVTHVMIRCQELKYDVGGGERFDSLTDLVEHYKKNPMVETL--GTVLQLKQPLNTTRINAAEIESRVRELSKLAETTDKVKQGFWEEFETLQQ-QECKLLYSRKEGQRQENKNKNRYKNILPFDHTRVVLHDGDPNEPVSDYINANIIMPEFETKCNNSKPKKSYIATQGCLQNTVNDFWRMVFQENSRVIVMTTKEVERGKSKCVKYWPDEYALKEYGVMRVRNVKESAAHDYTLRELKLSKVGQALLQGNTERTVWQYHFRTWPDHGVPSDPGGVLDFLEEVHHKQESIMDAGPVVVHCSAGIGRTGTFIVIDILIDIIREKGVDCDIDVPKTIQMVRSQRSGMVQTEAQYRFIYMAVQHYIETLQRRIEEEQKSKRKGH---EYTNIKY 551 The following BLAST results are available for this feature:
BLAST of TCONS_00008106 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.