TCONS_00008092 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008092
Unique NameTCONS_00008092
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length755

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008092 ID=TCONS_00008092|Name=TCONS_00008092|organism=Clytia hemisphaerica|type=transcript|length=755bp
NAAGAACATTGGTTTAGTCGCAGACATCGAAAAAGCTTTTTGGCAAATCA
TGCTGAACGAGAAAGATCGTGATTTTGTTCGTTTTTTATGGTTGAAAGAC
ATCAATGATattgattttaagaattttgataCCAATCAACTCGTTACTTA
TCGTATTTGTCGCGTTTTATTTGGAGTTACCTCCTCTCCGTTTCTGTTAA
ATGGAACACTCAGACATCATATTAACAAGATACAAGATACGTCAGTTCGT
GACCTGCTACTCCGCTCATTACACGTCGACGACCTTACGACAAGTCTAGA
CACTGAAGCTGAAGCCTGTGAATTTTATACGTCCTGTAAAGAACATTTTG
CTGAAGCCAATTTCAATCTTCGTAAAGCTCAATCGAACTGTGAATCGCTC
GAACGAAATctgagaaaactttttacagGAGAGAATCAAGTCCTCGACAA
ATGTGACCTCACTAAAGTGCTCGGCCTCCCATGGAACAAAGGTAATGATA
AGTTCTTTCTTACTTTCCAAAACTCTTTACACTCAGCTGAATTTTCGTTA
CCTACAAAGAGAAATGTTATTCAATTTACGTCGTCAATTTTCGATCCTCT
CGGACTTATAAATCCTCTTAtcgtgaaattgaaaattttattccaAGATA
TTTGTATTTCCAACACTGATTGGGATGAGACTATTCCCACTGAATTAATT
TCTGTCTGGCAGCAAATTTTACTTGATTTGAAGGAAATTAAAGATATTAG
TTTTN
Run BLAST on NCBI

protein sequence of TCONS_00008092-protein

>TCONS_00008092-protein ID=TCONS_00008092-protein|Name=TCONS_00008092-protein|organism=Clytia hemisphaerica|type=polypeptide|length=251bp
KNIGLVADIEKAFWQIMLNEKDRDFVRFLWLKDINDIDFKNFDTNQLVTY
RICRVLFGVTSSPFLLNGTLRHHINKIQDTSVRDLLLRSLHVDDLTTSLD
TEAEACEFYTSCKEHFAEANFNLRKAQSNCESLERNLRKLFTGENQVLDK
CDLTKVLGLPWNKGNDKFFLTFQNSLHSAEFSLPTKRNVIQFTSSIFDPL
GLINPLIVKLKILFQDICISNTDWDETIPTELISVWQQILLDLKEIKDIS
F
Run BLAST on NCBI

transcript from alignment at sc0000081:390019..390773

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008092 ID=TCONS_00008092|Name=TCONS_00008092|organism=Clytia hemisphaerica|type=transcript|length=755bp|location=Sequence derived from alignment at sc0000081:390019..390773 (Clytia hemisphaerica)
NAAAACTAATATCTTTAATTTCCTTCAAATCAAGTAAAATTTGCTGCCAG
ACAGAAATTAATTCAGTGGGAATAGTCTCATCCCAATCAGTGTTGGAAAT
ACAAATATCTtggaataaaattttcaatttcacgaTAAGAGGATTTATAA
GTCCGAGAGGATCGAAAATTGACGACGTAAATTGAATAACATTTCTCTTT
GTAGGTAACGAAAATTCAGCTGAGTGTAAAGAGTTTTGGAAAGTAAGAAA
GAACTTATCATTACCTTTGTTCCATGGGAGGCCGAGCACTTTAGTGAGGT
CACATTTGTCGAGGACTTGATTCTCTCctgtaaaaagttttctcagATTT
CGTTCGAGCGATTCACAGTTCGATTGAGCTTTACGAAGATTGAAATTGGC
TTCAGCAAAATGTTCTTTACAGGACGTATAAAATTCACAGGCTTCAGCTT
CAGTGTCTAGACTTGTCGTAAGGTCGTCGACGTGTAATGAGCGGAGTAGC
AGGTCACGAACTGACGTATCTTGTATCTTGTTAATATGATGTCTGAGTGT
TCCATTTAACAGAAACGGAGAGGAGGTAACTCCAAATAAAACGCGACAAA
TACGATAAGTAACGAGTTGATTGGtatcaaaattcttaaaatcaatATCA
TTGATGTCTTTCAACCATAAAAAACGAACAAAATCACGATCTTTCTCGTT
CAGCATGATTTGCCAAAAAGCTTTTTCGATGTCTGCGACTAAACCAATGT
TCTTN

Coding sequence (CDS) from alignment at sc0000081:390019..390773

>TCONS_00008092 ID=TCONS_00008092|Name=TCONS_00008092|organism=Clytia hemisphaerica|type=CDS|length=753bp|location=Sequence derived from alignment at sc0000081:390019..390773 (Clytia hemisphaerica)
AAAACTAATATCTTTAATTTCCTTCAAATCAAGTAAAATTTGCTGCCAGA
CAGAAATTAATTCAGTGGGAATAGTCTCATCCCAATCAGTGTTGGAAATA
CAAATATCTtggaataaaattttcaatttcacgaTAAGAGGATTTATAAG
TCCGAGAGGATCGAAAATTGACGACGTAAATTGAATAACATTTCTCTTTG
TAGGTAACGAAAATTCAGCTGAGTGTAAAGAGTTTTGGAAAGTAAGAAAG
AACTTATCATTACCTTTGTTCCATGGGAGGCCGAGCACTTTAGTGAGGTC
ACATTTGTCGAGGACTTGATTCTCTCctgtaaaaagttttctcagATTTC
GTTCGAGCGATTCACAGTTCGATTGAGCTTTACGAAGATTGAAATTGGCT
TCAGCAAAATGTTCTTTACAGGACGTATAAAATTCACAGGCTTCAGCTTC
AGTGTCTAGACTTGTCGTAAGGTCGTCGACGTGTAATGAGCGGAGTAGCA
GGTCACGAACTGACGTATCTTGTATCTTGTTAATATGATGTCTGAGTGTT
CCATTTAACAGAAACGGAGAGGAGGTAACTCCAAATAAAACGCGACAAAT
ACGATAAGTAACGAGTTGATTGGtatcaaaattcttaaaatcaatATCAT
TGATGTCTTTCAACCATAAAAAACGAACAAAATCACGATCTTTCTCGTTC
AGCATGATTTGCCAAAAAGCTTTTTCGATGTCTGCGACTAAACCAATGTT
CTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004562XLOC_004562Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008092-proteinTCONS_00008092-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008092-exon-sc0000081-1491911889:390019..390773TCONS_00008092-exon-sc0000081-1491911889:390019..390773Clytia hemisphaericaexon
TCONS_00008092-exon-sc0000081-1510915933:390019..390773TCONS_00008092-exon-sc0000081-1510915933:390019..390773Clytia hemisphaericaexon
TCONS_00008092-exon-sc0000081-1575043694:390019..390773TCONS_00008092-exon-sc0000081-1575043694:390019..390773Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000081supercontigsc0000081:390019..390773 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.692059	0.450542	0.111565	0.103163	0.817091	1.35992	2.87712	3.13797	0.943096	0.836949	1.5136	1.02326	1.91141	2.68298	3.35969	5.88017	1.62597	3.51344	0.37616	0.790775	1.71902	1.54614	0.9886	0.923914	0.567857	3.24511	0.540056	0.0950868	0.0799101	0.202148
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008042Retrotrans_Pao
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008092 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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