TCONS_00008080 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008080
Unique NameTCONS_00008080
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length776

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008080 ID=TCONS_00008080|Name=TCONS_00008080|organism=Clytia hemisphaerica|type=transcript|length=776bp
CGAAAAGCACTGCACACGAACAAAGAGAAAGATTGAAATAAGGTGAACTT
TAAAAAGCGAATTAACACAAGTTATCTCATCCAGTATATGGGAAACTGTT
TGAATTTACCAACGTTTCATGGACCAAGTTTTCAAGCTAACAACAGAGGA
CAAGACTTACCCAATAACAGAAGGTACAATCAAGATGTGTACGTAAAGAA
TGCAAATATCAACAATGATGTTAATGGATTACAAGCTGTGAACTTTTACC
AAGATGTGAAATTGGACCAACTAAGGTTTTCCCAAGATGTAGACTTAGAC
CAGATAAGGTCTGCCCCAGCTGTAGATTTGGACAGCACGACCCCTGCTCT
TGATGTTGATCTGAACCAAATGAAAACTGCCCCGACTGTAGAACTGAGTG
GAATATCAATACAAGAACATACTATTCATGGGAAAATGCATGGACAAAAA
GGATTCCGTAtgccaaaatttggatttggACTGGGAAATCCTCCAAGTTA
TCAGGACGCGATTgaccaaaactttcaaaatggtTCGCACATTGCCAAAG
GAAACGAACAACGATTCAGTACAACACAAAGAGGGTTCGGTTTTAAATTA
CCGAAACATACACGTGGTAAATCACGCAATAAAACACATACTATCGTTGG
AATTGGAGGAGGCCCACATTCTCATAGAACAGGACATTCACACAATAAAA
GAGGATTCGGAGTTAGAGGACCTAGTTTTAGATGATTTTTTGtgtcacat
ttttttttttgtttctaggAAATCCG
Run BLAST on NCBI

protein sequence of TCONS_00008080-protein

>TCONS_00008080-protein ID=TCONS_00008080-protein|Name=TCONS_00008080-protein|organism=Clytia hemisphaerica|type=polypeptide|length=215bp
MGNCLNLPTFHGPSFQANNRGQDLPNNRRYNQDVYVKNANINNDVNGLQA
VNFYQDVKLDQLRFSQDVDLDQIRSAPAVDLDSTTPALDVDLNQMKTAPT
VELSGISIQEHTIHGKMHGQKGFRMPKFGFGLGNPPSYQDAIDQNFQNGS
HIAKGNEQRFSTTQRGFGFKLPKHTRGKSRNKTHTIVGIGGGPHSHRTGH
SHNKRGFGVRGPSFR
Run BLAST on NCBI

transcript from alignment at sc0000081:178564..179339

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008080 ID=TCONS_00008080|Name=TCONS_00008080|organism=Clytia hemisphaerica|type=transcript|length=776bp|location=Sequence derived from alignment at sc0000081:178564..179339 (Clytia hemisphaerica)
CGGATTTcctagaaacaaaaaaaaaaatgtgacaCAAAAAATCATCTAAA
ACTAGGTCCTCTAACTCCGAATCCTCTTTTATTGTGTGAATGTCCTGTTC
TATGAGAATGTGGGCCTCCTCCAATTCCAACGATAGTATGTGTTTTATTG
CGTGATTTACCACGTGTATGTTTCGGTAATTTAAAACCGAACCCTCTTTG
TGTTGTACTGAATCGTTGTTCGTTTCCTTTGGCAATGTGCGAaccatttt
gaaagttttggtcAATCGCGTCCTGATAACTTGGAGGATTTCCCAGTcca
aatccaaattttggcaTACGGAATCCTTTTTGTCCATGCATTTTCCCATG
AATAGTATGTTCTTGTATTGATATTCCACTCAGTTCTACAGTCGGGGCAG
TTTTCATTTGGTTCAGATCAACATCAAGAGCAGGGGTCGTGCTGTCCAAA
TCTACAGCTGGGGCAGACCTTATCTGGTCTAAGTCTACATCTTGGGAAAA
CCTTAGTTGGTCCAATTTCACATCTTGGTAAAAGTTCACAGCTTGTAATC
CATTAACATCATTGTTGATATTTGCATTCTTTACGTACACATCTTGATTG
TACCTTCTGTTATTGGGTAAGTCTTGTCCTCTGTTGTTAGCTTGAAAACT
TGGTCCATGAAACGTTGGTAAATTCAAACAGTTTCCCATATACTGGATGA
GATAACTTGTGTTAATTCGCTTTTTAAAGTTCACCTTATTTCAATCTTTC
TCTTTGTTCGTGTGCAGTGCTTTTCG

Coding sequence (CDS) from alignment at sc0000081:178564..179339

>TCONS_00008080 ID=TCONS_00008080|Name=TCONS_00008080|organism=Clytia hemisphaerica|type=CDS|length=648bp|location=Sequence derived from alignment at sc0000081:178564..179339 (Clytia hemisphaerica)
TCATCTAAAACTAGGTCCTCTAACTCCGAATCCTCTTTTATTGTGTGAAT
GTCCTGTTCTATGAGAATGTGGGCCTCCTCCAATTCCAACGATAGTATGT
GTTTTATTGCGTGATTTACCACGTGTATGTTTCGGTAATTTAAAACCGAA
CCCTCTTTGTGTTGTACTGAATCGTTGTTCGTTTCCTTTGGCAATGTGCG
AaccattttgaaagttttggtcAATCGCGTCCTGATAACTTGGAGGATTT
CCCAGTccaaatccaaattttggcaTACGGAATCCTTTTTGTCCATGCAT
TTTCCCATGAATAGTATGTTCTTGTATTGATATTCCACTCAGTTCTACAG
TCGGGGCAGTTTTCATTTGGTTCAGATCAACATCAAGAGCAGGGGTCGTG
CTGTCCAAATCTACAGCTGGGGCAGACCTTATCTGGTCTAAGTCTACATC
TTGGGAAAACCTTAGTTGGTCCAATTTCACATCTTGGTAAAAGTTCACAG
CTTGTAATCCATTAACATCATTGTTGATATTTGCATTCTTTACGTACACA
TCTTGATTGTACCTTCTGTTATTGGGTAAGTCTTGTCCTCTGTTGTTAGC
TTGAAAACTTGGTCCATGAAACGTTGGTAAATTCAAACAGTTTCCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004550XLOC_004550Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008080-proteinTCONS_00008080-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008080-exon-sc0000081-1491911889:178564..179339TCONS_00008080-exon-sc0000081-1491911889:178564..179339Clytia hemisphaericaexon
TCONS_00008080-exon-sc0000081-1510915933:178564..179339TCONS_00008080-exon-sc0000081-1510915933:178564..179339Clytia hemisphaericaexon
TCONS_00008080-exon-sc0000081-1575043694:178564..179339TCONS_00008080-exon-sc0000081-1575043694:178564..179339Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000081supercontigsc0000081:178564..179339 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.437997	0.305083	1.13354	0.693118	2.19389	1.46693	4.82669	8.66082	14.7109	110.637	46.5937	29.7121	381.309	142.355	31.8348	82.8543	16.0174	50.2148	90.8586	158.137	0.0604972	0	0.0717426	0.913143	11.219	6.35536	13.7276	7.05051	186.54	84.9089
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008080 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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