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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008065 ID=TCONS_00008065|Name=TCONS_00008065|organism=Clytia hemisphaerica|type=transcript|length=2739bp
GAAAAAAGGAATGTTGACAATGTTTCCTGGCAATCAAAGTATTTGAGATA
CTGTAGTGTATTCCCAATACTGTAGAACGTCTCATTATGGATGATGTAGG
AATCAGGGGTGAATTTCTGCCACCAGAAATTAAAGATTGTGGAATAGACT
TCAAAGATCTGGACGACGAAATTCAAGATCAAATCAACAAGGACGGATAC
AGTGGGTATGAATATACAGGAAAATATTTCACCATATTTTACGGTGGTCA
TTTTTCCTtcatggaaaattttcatatcTTGGCTTGTGTTTTGAAGTTTG
ATGAAGCGCGACAAAAAATACGCCAAAAGACAATTAATATTCACATAAGA
TACCCTGGCTCTTTAACAACATCAAGTGGAACGGTTAAATATAACCCTAC
TACAACAGACTGGTTTGTTATATTTGGTTTAAACAATTCTACCAGGCGCC
AGGGCCGAATGACAGGTAATATTGTACCACGTATTGAGATTAATATATAT
CACGGCTGTCTTAGGCCTTATTTGGGCACATCAAGATTTATTGAGATAGA
TGGTAAAAATTATCCGACCAATAATCAGCTCCAATTGATTTACCCATACT
CTGAACGTCCTTCGCAAGATAGAAAGTCAATGTTGTGTCAAAGCAAAACA
TATGGCTCTTTATTGGTGATTTTTCTATCACAACACGGAAATACTTTAGA
TACTACAAACTTTATAATAGACATAGTTAAGTATAACGAGACTGAAATTT
CACATTTCAAACGCATCGAGGCTAAATTGAAAAGAAGATTATTTTCACAG
CAATTGTATTTTAACAGTACTAAGAATATATTCTATATTTTCAATGTTGG
ATATTCTACACAATCAGTTGTTGCGTTTGATTTTGATGGAGAAGTTTTGT
TCAAGCATGCGCTACCGAATGGTGTCAAAATAGAAAGAGTGCACCATATA
GAAAACTCTTTATTCATGGACCAAACAACAATACCGGCGAGAATACTGAA
AATATCTGAAGACAGGGTAGATATAGTGGTTATAAGAATGAATTCTGAAA
TGCTGGTAAATTCACCGGAAAAGTATACGTATTCATTTATTAACCACCTT
GGGAACAGATTTATTGAGATAAATCAAGAAGTAGGTCAAAATCGAAATTA
TAACAAAATCATTTCAAGACTATATAATTTTCACACTGGTGAGGAGCTAT
ATGAAAATCAACGAGATTCTAATAGGCCTTTTTGTTGGTATAATTGGAAT
ATGCGAGATATCGGTTATATTGACATTCGTACAAGGCAAGAGGTTGTTGG
AAATCGGATTCGGCAAGTCGATGATAAAGTGTTACAATTCCAGAAAATCC
AAATCAACAGTGATATTACTTTGAAACATTTAGCTCGTATGACTTGCATG
GAGTCGTTGAGTTGTGAATATATGAGCCAACGTTTACCTAATTGTTTAAA
ACGATACGTTGGTATTGAAATGTAAAAACCCTAACTCGAACCCAATCCTT
TGGTTagttggcccagcgctagcgatagggcctttcatttgcaactttcc
gtccgctgtctgtccgtccgttttgatAGAAACGGCGCCTtaaaccagta
acacactttttaattttgccgtttggagagggaaaaggcaggaaaaggtt
gctaaagtcggatactggctataaaagatatattttctgatttcacgctc
cttcaaaaacaaatttcaaaacaaaacaagatggcggtcgaagcgaggag
gttttgaacattttctttgctttagtggtcaagagactttcaaaccaagg
atattttgtaatgattttcttttataaacctttttcaacattctgccata
tcatatagtctttgctcaagttttcataaagttttatgagtgaaaattct
accttaaaccACTTTTATTTTTGGTTAATTGCTTtcgaaaagactttatt
tttaggaaataatggcttctgatatagaaataaataaactgaaatgcagc
tcatgtgtaaatttgaataagattggaactttttccttgatgctacacaa
gaaaacagtcacttctggatctgtcgctaacAATGGTCAGTGGCTGGTGG
tacgtggtatgattttcaaactcaacacatgattattaaaagtaaactga
ttctggaatttggtaatggacactaaaatggagctcatgtgtaaattgga
acaagattggtacTTTTTCCATGAGGCTATgcgtgaaaatggttaattct
ggatctgtctcgtttgacgattggtgcgatggcttgattttttaaactcg
acacagaattatttcaaatctgaTTATGGAATATGTTagcggagactaaa
atgcagctcatgtgtaaactttaacaagattgggacttttttcatgattc
tacacattAATTAAAATGGTCAATTCTGGATCTGTCACATTAAACAgtcg
gtggcttgatttttcaaactcgactcacatatCGTCAACcgtctctaact
tgggacgattggtcgaaacatgggactgttgcatatctggtctttatttt
cacttactgtaaaatcgaaagagaaatcgtgtatttttgaATACgccttt
ccttaactcaaatcaaatgactttggaagttcggtaaatggtggctgaat
tgccgtcccatgttttttcagatagtcccaagttggagcagttgatggta
attattcaaagtatataaactgattctggaatctttaaa Run BLAST on NCBI protein sequence of TCONS_00008065-protein >TCONS_00008065-protein ID=TCONS_00008065-protein|Name=TCONS_00008065-protein|organism=Clytia hemisphaerica|type=polypeptide|length=462bp
MDDVGIRGEFLPPEIKDCGIDFKDLDDEIQDQINKDGYSGYEYTGKYFTI
FYGGHFSFMENFHILACVLKFDEARQKIRQKTINIHIRYPGSLTTSSGTV
KYNPTTTDWFVIFGLNNSTRRQGRMTGNIVPRIEINIYHGCLRPYLGTSR
FIEIDGKNYPTNNQLQLIYPYSERPSQDRKSMLCQSKTYGSLLVIFLSQH
GNTLDTTNFIIDIVKYNETEISHFKRIEAKLKRRLFSQQLYFNSTKNIFY
IFNVGYSTQSVVAFDFDGEVLFKHALPNGVKIERVHHIENSLFMDQTTIP
ARILKISEDRVDIVVIRMNSEMLVNSPEKYTYSFINHLGNRFIEINQEVG
QNRNYNKIISRLYNFHTGEELYENQRDSNRPFCWYNWNMRDIGYIDIRTR
QEVVGNRIRQVDDKVLQFQKIQINSDITLKHLARMTCMESLSCEYMSQRL
PNCLKRYVGIEM Run BLAST on NCBI transcript from alignment at sc0000081:3276..6014 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008065 ID=TCONS_00008065|Name=TCONS_00008065|organism=Clytia hemisphaerica|type=transcript|length=2739bp|location=Sequence derived from alignment at sc0000081:3276..6014 (Clytia hemisphaerica)
tttaaagattccagaatcagtttatatactttgaataattaccatcaact
gctccaacttgggactatctgaaaaaacatgggacggcaattcagccacc
atttaccgaacttccaaagtcatttgatttgagttaaggaaaggcGTATt
caaaaatacacgatttctctttcgattttacagtaagtgaaaataaagac
cagatatgcaacagtcccatgtttcgaccaatcgtcccaagttagagacg
GTTGACGatatgtgagtcgagtttgaaaaatcaagccaccgacTGTTTAA
TGTGACAGATCCAGAATTGACCATTTTAATTaatgtgtagaatcatgaaa
aaagtcccaatcttgttaaagtttacacatgagctgcattttagtctccg
ctAACATATTCCATAAtcagatttgaaataattctgtgtcgagtttaaaa
aatcaagccatcgcaccaatcgtcaaacgagacagatccagaattaacca
ttttcacgcATAGCCTCATGGAAAAAgtaccaatcttgttccaatttaca
catgagctccattttagtgtccattaccaaattccagaatcagtttactt
ttaataatcatgtgttgagtttgaaaatcataccacgtaCCACCAGCCAC
TGACCATTgttagcgacagatccagaagtgactgttttcttgtgtagcat
caaggaaaaagttccaatcttattcaaatttacacatgagctgcatttca
gtttatttatttctatatcagaagccattatttcctaaaaataaagtctt
ttcgaAAGCAATTAACCAAAAATAAAAGTggtttaaggtagaattttcac
tcataaaactttatgaaaacttgagcaaagactatatgatatggcagaat
gttgaaaaaggtttataaaagaaaatcattacaaaatatccttggtttga
aagtctcttgaccactaaagcaaagaaaatgttcaaaacctcctcgcttc
gaccgccatcttgttttgttttgaaatttgtttttgaaggagcgtgaaat
cagaaaatatatcttttatagccagtatccgactttagcaaccttttcct
gccttttccctctccaaacggcaaaattaaaaagtgtgttactggtttaA
GGCGCCGTTTCTatcaaaacggacggacagacagcggacggaaagttgca
aatgaaaggccctatcgctagcgctgggccaactAACCAAAGGATTGGGT
TCGAGTTAGGGTTTTTACATTTCAATACCAACGTATCGTTTTAAACAATT
AGGTAAACGTTGGCTCATATATTCACAACTCAACGACTCCATGCAAGTCA
TACGAGCTAAATGTTTCAAAGTAATATCACTGTTGATTTGGATTTTCTGG
AATTGTAACACTTTATCATCGACTTGCCGAATCCGATTTCCAACAACCTC
TTGCCTTGTACGAATGTCAATATAACCGATATCTCGCATATTCCAATTAT
ACCAACAAAAAGGCCTATTAGAATCTCGTTGATTTTCATATAGCTCCTCA
CCAGTGTGAAAATTATATAGTCTTGAAATGATTTTGTTATAATTTCGATT
TTGACCTACTTCTTGATTTATCTCAATAAATCTGTTCCCAAGGTGGTTAA
TAAATGAATACGTATACTTTTCCGGTGAATTTACCAGCATTTCAGAATTC
ATTCTTATAACCACTATATCTACCCTGTCTTCAGATATTTTCAGTATTCT
CGCCGGTATTGTTGTTTGGTCCATGAATAAAGAGTTTTCTATATGGTGCA
CTCTTTCTATTTTGACACCATTCGGTAGCGCATGCTTGAACAAAACTTCT
CCATCAAAATCAAACGCAACAACTGATTGTGTAGAATATCCAACATTGAA
AATATAGAATATATTCTTAGTACTGTTAAAATACAATTGCTGTGAAAATA
ATCTTCTTTTCAATTTAGCCTCGATGCGTTTGAAATGTGAAATTTCAGTC
TCGTTATACTTAACTATGTCTATTATAAAGTTTGTAGTATCTAAAGTATT
TCCGTGTTGTGATAGAAAAATCACCAATAAAGAGCCATATGTTTTGCTTT
GACACAACATTGACTTTCTATCTTGCGAAGGACGTTCAGAGTATGGGTAA
ATCAATTGGAGCTGATTATTGGTCGGATAATTTTTACCATCTATCTCAAT
AAATCTTGATGTGCCCAAATAAGGCCTAAGACAGCCGTGATATATATTAA
TCTCAATACGTGGTACAATATTACCTGTCATTCGGCCCTGGCGCCTGGTA
GAATTGTTTAAACCAAATATAACAAACCAGTCTGTTGTAGTAGGGTTATA
TTTAACCGTTCCACTTGATGTTGTTAAAGAGCCAGGGTATCTTATGTGAA
TATTAATTGTCTTTTGGCGTATTTTTTGTCGCGCTTCATCAAACTTCAAA
ACACAAGCCAAgatatgaaaattttccatgaAGGAAAAATGACCACCGTA
AAATATGGTGAAATATTTTCCTGTATATTCATACCCACTGTATCCGTCCT
TGTTGATTTGATCTTGAATTTCGTCGTCCAGATCTTTGAAGTCTATTCCA
CAATCTTTAATTTCTGGTGGCAGAAATTCACCCCTGATTCCTACATCATC
CATAATGAGACGTTCTACAGTATTGGGAATACACTACAGTATCTCAAATA
CTTTGATTGCCAGGAAACATTGTCAACATTCCTTTTTTC Coding sequence (CDS) from alignment at sc0000081:3276..6014 >TCONS_00008065 ID=TCONS_00008065|Name=TCONS_00008065|organism=Clytia hemisphaerica|type=CDS|length=1389bp|location=Sequence derived from alignment at sc0000081:3276..6014 (Clytia hemisphaerica)
TTACATTTCAATACCAACGTATCGTTTTAAACAATTAGGTAAACGTTGGC
TCATATATTCACAACTCAACGACTCCATGCAAGTCATACGAGCTAAATGT
TTCAAAGTAATATCACTGTTGATTTGGATTTTCTGGAATTGTAACACTTT
ATCATCGACTTGCCGAATCCGATTTCCAACAACCTCTTGCCTTGTACGAA
TGTCAATATAACCGATATCTCGCATATTCCAATTATACCAACAAAAAGGC
CTATTAGAATCTCGTTGATTTTCATATAGCTCCTCACCAGTGTGAAAATT
ATATAGTCTTGAAATGATTTTGTTATAATTTCGATTTTGACCTACTTCTT
GATTTATCTCAATAAATCTGTTCCCAAGGTGGTTAATAAATGAATACGTA
TACTTTTCCGGTGAATTTACCAGCATTTCAGAATTCATTCTTATAACCAC
TATATCTACCCTGTCTTCAGATATTTTCAGTATTCTCGCCGGTATTGTTG
TTTGGTCCATGAATAAAGAGTTTTCTATATGGTGCACTCTTTCTATTTTG
ACACCATTCGGTAGCGCATGCTTGAACAAAACTTCTCCATCAAAATCAAA
CGCAACAACTGATTGTGTAGAATATCCAACATTGAAAATATAGAATATAT
TCTTAGTACTGTTAAAATACAATTGCTGTGAAAATAATCTTCTTTTCAAT
TTAGCCTCGATGCGTTTGAAATGTGAAATTTCAGTCTCGTTATACTTAAC
TATGTCTATTATAAAGTTTGTAGTATCTAAAGTATTTCCGTGTTGTGATA
GAAAAATCACCAATAAAGAGCCATATGTTTTGCTTTGACACAACATTGAC
TTTCTATCTTGCGAAGGACGTTCAGAGTATGGGTAAATCAATTGGAGCTG
ATTATTGGTCGGATAATTTTTACCATCTATCTCAATAAATCTTGATGTGC
CCAAATAAGGCCTAAGACAGCCGTGATATATATTAATCTCAATACGTGGT
ACAATATTACCTGTCATTCGGCCCTGGCGCCTGGTAGAATTGTTTAAACC
AAATATAACAAACCAGTCTGTTGTAGTAGGGTTATATTTAACCGTTCCAC
TTGATGTTGTTAAAGAGCCAGGGTATCTTATGTGAATATTAATTGTCTTT
TGGCGTATTTTTTGTCGCGCTTCATCAAACTTCAAAACACAAGCCAAgat
atgaaaattttccatgaAGGAAAAATGACCACCGTAAAATATGGTGAAAT
ATTTTCCTGTATATTCATACCCACTGTATCCGTCCTTGTTGATTTGATCT
TGAATTTCGTCGTCCAGATCTTTGAAGTCTATTCCACAATCTTTAATTTC
TGGTGGCAGAAATTCACCCCTGATTCCTACATCATCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008065-exon-sc0000081-1491911889:3276..6014 | TCONS_00008065-exon-sc0000081-1491911889:3276..6014 | Clytia hemisphaerica | exon |
| TCONS_00008065-exon-sc0000081-1510915933:3276..6014 | TCONS_00008065-exon-sc0000081-1510915933:3276..6014 | Clytia hemisphaerica | exon |
| TCONS_00008065-exon-sc0000081-1575043694:3276..6014 | TCONS_00008065-exon-sc0000081-1575043694:3276..6014 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000081 | supercontig | sc0000081:3276..6014 . |
Blast
The following BLAST results are available for this feature:
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