TCONS_00008055 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008055
Unique NameTCONS_00008055
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length600

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008055 ID=TCONS_00008055|Name=TCONS_00008055|organism=Clytia hemisphaerica|type=transcript|length=600bp
ACAACAAAGAAATTCACATATCAGGCAGTAGCTAAAaagttaaattattt
ttatcaacaAGAAGTCACAAGGAAAAACACAcgatttttgaaacattttt
ttaatccAACGTAATACTTTCGATAACTAAAATTTTTGGAAACCATTAAA
TTATGAATCGTTATGATATCGTGTTATTGGCAACTTTAACCATCTTTTAT
TCAATGGTGCTAGAAAATGCGACAGCGAAATCAGGATGCGGTTTTCGATG
GCGGATACCGTGTCCATCTGATGGCAAGAAGAGAAGCATGATGGCTGCTT
CGAAGAAAAACATGGATCACAAATATGACTTAAATCAAATCGAGAACGAT
ATCCTGGCAGAAGTCATGCATGAAAACCACCTTAATGATGTCGAAGATGG
CCCTTCAAGAGATAACCTTTACACAGAAAAGAACATTCGACATCGGGCGA
GTTTAGATTTATCGAATAAGCGAGAGCAACAACAAACGGCAGATGAGTTA
TCGAGGCTACACAAAATGGGAGCTAAGCTGCTAGAAAGTTATTATGACGA
AATGAAAAGAGGAACGTccgaaaaatttgatgacgatgatgatatGGATG
Run BLAST on NCBI

transcript from alignment at sc0000081:619854..622130-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008055 ID=TCONS_00008055|Name=TCONS_00008055|organism=Clytia hemisphaerica|type=transcript|length=2277bp|location=Sequence derived from alignment at sc0000081:619854..622130- (Clytia hemisphaerica)
ACAACAAAGAAATTCACATATCAGGCAGTAGCTAAAAAGTTAAATTATTT
TTATCAACAAGAAGTCACAAGGAAAAACACACGATTTTTGAAACATTTTT
TTAATCCAACGTAATACTTTCGATAACTAAAATTTTTGGAAACCATTAAA
TTATGAATCGTTATGATATCGTGTTATTGGCAACTTTAACCATCTTTTAT
TCAATGGTGCTAGAAAATGCGACAGCGAAATCAGGATGCGGTTTTCGATG
GCGGATACCGTGTCCATCTGATGGCAAGAAGAGAAGCATGGTAGGTTGGT
TTTAAATGATCTCTGAGCAGATTCTGATACTCCCCACATGGCACGTTTTC
ACTTTAAAGGCCATGGCTCCGTAAGAGAATCTGCCCAGGTTGTCGCACTG
CTTTGATCTTTTTCAACCAGATTTGGGATTAAATGAGCTTTTAAGCGCGA
TGATTGGCCAAAATAAAACAAACGCACAAAAACCAAAAGCCAATCATAAT
CATAAACATTAAAACCCAGTCGCTTTCGTTTTCAAATTTTCAAAGGGAAA
AGTCAACGCAGTTTTGAATGTTTTGGCTGAGCAACCATGTCAGATCATCA
CATTCGTCATACACCCCTTTTGAGCAAAGCGTGGTATGCGTAGAATGGAT
GATCTGTTATGAGATTAGGTTGGTTTTAAACAATTTTCATACAGTATAGT
CCGTCCTGTTTCATTTGGATAATATGGCCCTATACCAGCACTTTAATTTC
ATTGTTTTTGATAGTGAAAAAGAAAATGTTTGTAAAGGGGAAAACTTCAC
CCTCCAACGGCCGAATTTTTCAGAGCACTAAAAAATAAAAGAGGCCAAGG
AGCGCGCTAATATTTGTGTACACTAATTCTCAATCTTTCTGATTTTTTTA
AACCTTTCCGTTACAAAGCTGTAGGTTATATTTTGTTTTGTATTTTTAGA
AAGGCCATACAAACTGAATATTTTCTAAAATATTTATTTTGGTGGACCTC
AAATAAAAAGTTCACGTTTTGACAAAAAATATCTGTTGCAAATTGGTTTT
TGATGAATTTAATGATCTGTGGAGAAAAGACAGACTTAACGCAAATACAA
AATATCTGAAATTTCATAATCAGAAAGAAAATGAAGAGAGCTTTGGTTTT
TATACTTTGCTATTATAATGTGGTTTACACGTATAACCAAAAACGTTTTC
GAAGATCTAGGTGGGCTTTTGATGTAAGTTTGAATGCTGGTTTAACGGTT
TTCAATACGCATTATAAGAACATTTCAAATTTTTGAAGCCTTCGGGTGTT
CTTAACTTTTTGAGTTTTAAGCCCAAATATATTCTTAACATGTTCTTATT
TACACCATTTTGGGAATATTTTTGACCATTTCCCTAAGAAATAGGGTGTT
TTTGAGTCCACAATGCCTCAAAATGTTCTTAACTTGTTCTTAACATTTTG
GCCAGCGAAGCCTTGTGTTCTTATATAGTTTGTTCTTATTAAAAAAAAAC
GTGTAGCATACAAGTAATTTAAAAGTTGCTAGAGTAAAATAAAATGAAAG
ATATATCTGAATGGTATATATACACGCATTTTTTTAAGAACCAATAAATC
TTTCCTGAGCCTGAGATTGTTCTTAAATATCTATTGTTCTCTATATATGA
ATGTAGAAATTTTAAGTAAGGAATCTCAGACTTTGGACCAATAAGACCAG
AGTGATTCCAGCTGAGATGGAGTTTTTAAAAGGTACTTTAATGATTGGTC
ATTTGAAGTAATAAAAATGACGCGTTCTTTAGAAAAAGTAATAAAATTGT
TTTATACTGGTTAACGACCAATCAAATCAATTAAGAGCTTGTAAAAACTC
CATCTCATCCCAGTGATTCGACTTTTGGAGAGAATAAGGAACTATACCTA
AAACACCTTTTAATCCCTTTTATCTTTTGAACTTTAACAAAATATTCGTT
TTTCCCTTTTTTTATAGATGGCTGCTTCGAAGAAAAACATGGATCACAAA
TATGACTTAAATCAAATCGAGAACGATATCCTGGCAGAAGTCATGCATGA
AAACCACCTTAATGATGTCGAAGATGGCCCTTCAAGAGATAACCTTTACA
CAGAAAAGAACATTCGACATCGGGCGAGTTTAGATTTATCGAATAAGCGA
GAGCAACAACAAACGGCAGATGAGTTATCGAGGCTACACAAAATGGGAGC
TAAGCTGCTAGAAAGTTATTATGACGAAATGAAAAGAGGAACGTCCGAAA
AATTTGATGACGATGATGATATGGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004533XLOC_004533Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008055-exon-sc0000081-1575043694:621841..622130TCONS_00008055-exon-sc0000081-1575043694:621841..622130Clytia hemisphaericaexon
TCONS_00008055-exon-sc0000081-1575043694:619854..620163TCONS_00008055-exon-sc0000081-1575043694:619854..620163Clytia hemisphaericaexon
TCONS_00008055-exon-sc0000081-1510915933:621841..622130TCONS_00008055-exon-sc0000081-1510915933:621841..622130Clytia hemisphaericaexon
TCONS_00008055-exon-sc0000081-1510915933:619854..620163TCONS_00008055-exon-sc0000081-1510915933:619854..620163Clytia hemisphaericaexon
TCONS_00008055-exon-sc0000081-1491911889:621841..622130TCONS_00008055-exon-sc0000081-1491911889:621841..622130Clytia hemisphaericaexon
TCONS_00008055-exon-sc0000081-1491911889:619854..620163TCONS_00008055-exon-sc0000081-1491911889:619854..620163Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000081supercontigsc0000081:619854..622130 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.136411	0	0	0.193385	0.349966	0.0517209	0	0	0	0	4.63363	0.206692	0	0	0	0.0574639	0	0.201887	3.32364	0	0	0.365911	9.10807	9.63008	0	0	0.293458	0.149701
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008055 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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