TCONS_00008052 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008052
Unique NameTCONS_00008052
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length677

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008052 ID=TCONS_00008052|Name=TCONS_00008052|organism=Clytia hemisphaerica|type=transcript|length=677bp
CAGACTTAACGCAAATACAAAATATCTGAAATTTCATAATcagaaagaaa
atgaagagaGCTTTGGTTTTTATACTTTGCTATTATAATGTGGTTTACAC
GTATAACCAAAAACGTTTTCGAAGATCTAGGTGGGCTTTTGATATGGCTG
CGTCGAAGAAAAACATGGATCACAAATATGACTTAAATCAAATCGAGAAC
GATATCCTGGCAGAAGTCATGCATGAAAACCACCTTAATGATGTCGAAGA
TGGCCCTTCAAGAGATAACCTTTACACAGAAAAGAACATTCGACATCGGG
CGAGTTTAGATTTATCGAATAAGCGAGACAAGCAACAACAAACGGCAGAT
GAGTTATCGAGGCTACACAAAATGGGAGCTAAGCTGCTAGAAAGTTATTA
TGACGAAATGAAAAGAGGAACGTccgaaaaatttgatgacgatgatgata
tGGATGAAATcaacttttgatttcaaaaaatgacttTTAGACTTGTGAAT
TTATGATAAATAGATTGACGAAGACTGAACtctataaaaaaatacaaata
tgtaGAGTAGAATAGAAATGTATGTTAGAATTTGCTCGATTATAACGCTa
taattttaaatggaaaatatttttacgaATCAAAACCAAATTAAAATAAA
GATTGTTGCAGATTGacaatttaaaat
Run BLAST on NCBI

transcript from alignment at sc0000081:618813..621050-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008052 ID=TCONS_00008052|Name=TCONS_00008052|organism=Clytia hemisphaerica|type=transcript|length=2238bp|location=Sequence derived from alignment at sc0000081:618813..621050- (Clytia hemisphaerica)
CAGACTTAACGCAAATACAAAATATCTGAAATTTCATAATCAGAAAGAAA
ATGAAGAGAGCTTTGGTTTTTATACTTTGCTATTATAATGTGGTTTACAC
GTATAACCAAAAACGTTTTCGAAGATCTAGGTGGGCTTTTGATGTAAGTT
TGAATGCTGGTTTAACGGTTTTCAATACGCATTATAAGAACATTTCAAAT
TTTTGAAGCCTTCGGGTGTTCTTAACTTTTTGAGTTTTAAGCCCAAATAT
ATTCTTAACATGTTCTTATTTACACCATTTTGGGAATATTTTTGACCATT
TCCCTAAGAAATAGGGTGTTTTTGAGTCCACAATGCCTCAAAATGTTCTT
AACTTGTTCTTAACATTTTGGCCAGCGAAGCCTTGTGTTCTTATATAGTT
TGTTCTTATTAAAAAAAAACGTGTAGCATACAAGTAATTTAAAAGTTGCT
AGAGTAAAATAAAATGAAAGATATATCTGAATGGTATATATACACGCATT
TTTTTAAGAACCAATAAATCTTTCCTGAGCCTGAGATTGTTCTTAAATAT
CTATTGTTCTCTATATATGAATGTAGAAATTTTAAGTAAGGAATCTCAGA
CTTTGGACCAATAAGACCAGAGTGATTCCAGCTGAGATGGAGTTTTTAAA
AGGTACTTTAATGATTGGTCATTTGAAGTAATAAAAATGACGCGTTCTTT
AGAAAAAGTAATAAAATTGTTTTATACTGGTTAACGACCAATCAAATCAA
TTAAGAGCTTGTAAAAACTCCATCTCATCCCAGTGATTCGACTTTTGGAG
AGAATAAGGAACTATACCTAAAACACCTTTTAATCCCTTTTATCTTTTGA
ACTTTAACAAAATATTCGTTTTTCCCTTTTTTTATAGATGGCTGCTTCGA
AGAAAAACATGGATCACAAATATGACTTAAATCAAATCGAGAACGATATC
CTGGCAGAAGTCATGCATGAAAACCACCTTAATGATGTCGAAGATGGCCC
TTCAAGAGATAACCTTTACACAGAAAAGAACATTCGACATCGGGCGAGTT
TAGATTTATCGAATAAGCGAGAGCAACAACAAACGGCAGATGAGTTATCG
AGGCTACACAAAATGGGAGCTAAGCTGCTAGAAAGTTATTATGACGAAAT
GAAAAGAGGAACGTCCGAAAAATTTGATGACGATGATGATATGGATGAAA
TCAACTTTTGATNAGTTTGTTCTTATTAAAAAAAAACGTGTAGCATACAA
GTAATTTAAAAGTTGCTAGAGTAAAATAAAATGAAAGATATATCTGAATG
GTATATATACACGCATTTTTTTAAGAACCAATAAATCTTTCCTGAGCCTG
AGATTGTTCTTAAATTTCTATTGTTCTCTATATATGAATGTAGAAATTTT
AAGTAAGGAATCTCAGACTTTGGACCAATAAGACCAGAGTGATTCCAGCT
GAGATGGAGTTTTTAAAAGGTACTTTAATGATTGGTCATTTGAAGTAATA
AAAATGACGCGTTCTTTAGAAAAAGTAATAAAATTGTTTTATACTGGTTA
ACGACCAATCAAATCAATTAAGAGCTTGTAAAAACTCCATCTCATCCCAG
TGATTCGACTTTTGGAGAGAATAAGGAACTATACCTAAAACACCTTTTAA
TCCCTTTTATCTTTTGAACTTTAACAAAATATTCGTTTTTCCCTTTTTTT
ATAGATGGCTGCGTCGAAGAAAAACATGGATCACAAATATGACTTAAATC
AAATCGAGAACGATATCCTGGCAGAAGTCATGCATGAAAACCACCTTAAT
GATGTCGAAGATGGCCCTTCAAGAGATAACCTTTACACAGAAAAGAACAT
TCGACATCGGGCGAGTTTAGATTTATCGAATAAGCGAGACAAGCAACAAC
AAACGGCAGATGAGTTATCGAGGCTACACAAAATGGGAGCTAAGCTGCTA
GAAAGTTATTATGACGAAATGAAAAGAGGAACGTCCGAAAAATTTGATGA
CGATGATGATATGGATGAAATCAACTTTTGATTTCAAAAAATGACTTTTA
GACTTGTGAATTTATGATAAATAGATTGACGAAGACTGAACTCTATAAAA
AAATACAAATATGTAGAGTAGAATAGAAATGTATGTTAGAATTTGCTCGA
TTATAACGCTATAATTTTAAATGGAAAATATTTTTACGAATCAAAACCAA
ATTAAAATAAAGATTGTTGCAGATTGACAATTTAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004533XLOC_004533Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008052-exon-sc0000081-1575043694:620908..621050TCONS_00008052-exon-sc0000081-1575043694:620908..621050Clytia hemisphaericaexon
TCONS_00008052-exon-sc0000081-1575043694:618813..619346TCONS_00008052-exon-sc0000081-1575043694:618813..619346Clytia hemisphaericaexon
TCONS_00008052-exon-sc0000081-1510915933:620908..621050TCONS_00008052-exon-sc0000081-1510915933:620908..621050Clytia hemisphaericaexon
TCONS_00008052-exon-sc0000081-1510915933:618813..619346TCONS_00008052-exon-sc0000081-1510915933:618813..619346Clytia hemisphaericaexon
TCONS_00008052-exon-sc0000081-1491911889:620908..621050TCONS_00008052-exon-sc0000081-1491911889:620908..621050Clytia hemisphaericaexon
TCONS_00008052-exon-sc0000081-1491911889:618813..619346TCONS_00008052-exon-sc0000081-1491911889:618813..619346Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000081supercontigsc0000081:618813..621050 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.218002	0	0	0	0	0.61689	0.259971	0	0	0.35341	1.82486	0	0	0.0461947	4.2878	2.95434	0.324284	0	22.8389	20.0876	3.86681	6.96483	6.00771	5.34464	0	0.110935	0	0.116289
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008052 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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