TCONS_00008043 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008043
Unique NameTCONS_00008043
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1241

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008043 ID=TCONS_00008043|Name=TCONS_00008043|organism=Clytia hemisphaerica|type=transcript|length=1241bp
AGTATTGATTTCTTTCGTTTTGAAATATTGCTCGGCAGCTTTCTTGAACC
CCTGTCGCATCACCTTCGCTTCTTTACAtctcaaatcaaaatcaagATCA
TCTTCAAAACGAAACGTTGCATCAATTTTCaatggtttgttttttatgAA
TGTTCTTAAAGTTTCTGTTGCCAAATTATTTTTGGCAGCTTCATCCAGAA
GCTCGTCGGCTTTTATGTCTAAAGCCCTTAATTTTTCGCTTATATCTACC
ACACCTTCGATACGTaaatacttttgaaatttgCTACTGTACATTGAGAG
ATCGCTTTTTGCCGAAGCAGTACAGATGGATAAAAGCTCAGTACTATGCT
CTCGCAGCTCAAAATCATTTATTGATCCTTTATCTTTCAAAAAGTCTAAC
AACACTTTAACAGCGAACCAAACTGTATCTTTAATCGTTTGCCAAGAAGT
GCAATATCCTGGCGCATTTGCATCGCTGAAACGACCGTTGTCCATATCAG
TGCATTTAACTTCGGTCAAATGCATAGCGATGTTCCTGAAAGTATGGACG
ATAGAAATTGCTAGTCTTAACTCTTGCATCTCACAAAGTTTCTTGTTTAA
AGTTAAAGTGATTGACTTTTCCAAGAGTTCTTGCTGTGAATTGAAGCCAT
TTGATTTGATAACGCAATGTAAACACGTGTAGCAAGATCGACAACAAACA
TATTTGATATCTCTGCATTCGAAAGACTTTGAGTTGCATTGCTGGCATTT
ATGCATACATTTCTTGCTTGTCATACAACAGTTTTTGCCACAGTTTACTT
TGGAGCATACTGAGCATTTATGGCCATCACATTGAAAACAACACTGGACT
GGTTTCTGGTGATTGACGGAGTCCTTGCATTGCAAATGACTTTCATATTT
TGAAGAGCATGAAAAATCTTCAATATCGCGTAAAATTTCAACTAAAGAGT
TTGTATCCAATAGATGAATAGGGATTTCGTTCTGAAAAATACCTTTTTTC
AGATCCTGATAAACAGTTCCAGTCACTGATGGGTTAGTCTTGAAACTTTG
AAATCCGtttgcaatattttttcttcggGTTAGAATCACACTCAATGCTT
GACCTTCACTTTGTGCTGTGGGTTCAACTAACTTGCAAAAATAACTGAGT
AATTTTTGTAGAGCGTACTGGCCAACTTGACTCAAACCGAAGAGTTGCAG
GTGATGGAGATGGGTTGGACCATTATTCATGTCTCAATCAC
Run BLAST on NCBI

transcript from alignment at sc0000081:424465..425763-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008043 ID=TCONS_00008043|Name=TCONS_00008043|organism=Clytia hemisphaerica|type=transcript|length=1299bp|location=Sequence derived from alignment at sc0000081:424465..425763- (Clytia hemisphaerica)
AGTATTGATTTCTTTCGTTTTGAAATATTGCTCGGCAGCTTTCTTGAACC
CCTGTCGCATCACCTTCGCTTCTTTACATCTCAAATCAAAATCAAGATCA
TCTTCAAAACGAAACGTTGCATCAATTTTCAATGGTTTGTTTTTTATGAA
TGTTCTTAAAGTTTCTGTTGCCAAATTATTTTTGGCAGCTTCATCCAGAA
GCTCGTCGGCTTTTATGTCTAAAGCCCTTAATTTTTCGCTTATATCTACC
ACACCTTCGATACGTAAATACTTTTGAAATTTGCTACTGTACATTGAGAG
ATCGCTTTTTGCCGAAGCAGTACAGATGGATAAAAGCTCAGTACTATGCT
CTCGCAGCTCAAAATCATTTATTGATCCTTTATCTTTCAAAAAGTCTAAC
AACACTTTAACAGCGAACCAAACTGTATCTTTAATCGTTTGCCAAGAAGT
GCAATATCCTGGCGCATTTGCATCGCTGAAACGACCGTTGTCCATATCAG
TGCATTTAACTTCGGTCAAATGCATAGCGATGTTCCTGAAAGTATGGACG
ATAGAAATTGCTAGTCTTAACTCTTGCATCTCACAAAGTTTCTTGTTTAA
AGTTAAAGTGATTGACTTTTCCAAGAGTTCTTGCTGTGAATTGAAGCCAT
TTGATTTGATAACGCAATGTAAACACGTGTAGCAAGATCGACAACAAACA
TATTTGATATCTCTGCATTCGAAAGACTTTGAGTTGCATTGCTGGCATTT
ATGCATACATTTCTTGCTTGTCATACAACAGTTTTTGCCACAGTTTACTT
TGGAGCATACTGAGCATTTATGGCCATCACATTGAAAACAACACTGGACT
GGTTTCTGGTGATTGACGGAGTCCTTGCATTGCAAATGACTTTCATATTT
TGAAGAGCATGAAAAATCTTCAATATCGCGTAAAATTTCAACTAAAGAGT
TTGTATCCAATAGATGAATAGGGATTTCGTTCTGAAAAATACCTTTTTTC
AGATCCTGATAAACAGTTCCAGTCACTGATGGGTTAGTCTTGAAACTTTG
AAATCCGTTTGCAATATTTTTTCTTCGGGTTAGAATCACACTCAATGCTT
GACCTTCACTTTGTGCTGTGGGTTCAACTAACATGCAAAAATAACTGAGN
CAATGCTTGACCTTCACTTTGTGCTGTGGGTTCAACTAACTTGCAAAAAT
AACTGAGTAATTTTTGTAGAGCGTACTGGCCAACTTGACTCAAACCGAAG
AGTTGCAGGTGATGGAGATGGGTTGGACCATTATTCATGTCTCAATCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004529XLOC_004529Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008043-exon-sc0000081-1575043694:424632..425763TCONS_00008043-exon-sc0000081-1575043694:424632..425763Clytia hemisphaericaexon
TCONS_00008043-exon-sc0000081-1575043694:424465..424573TCONS_00008043-exon-sc0000081-1575043694:424465..424573Clytia hemisphaericaexon
TCONS_00008043-exon-sc0000081-1510915933:424632..425763TCONS_00008043-exon-sc0000081-1510915933:424632..425763Clytia hemisphaericaexon
TCONS_00008043-exon-sc0000081-1510915933:424465..424573TCONS_00008043-exon-sc0000081-1510915933:424465..424573Clytia hemisphaericaexon
TCONS_00008043-exon-sc0000081-1491911889:424632..425763TCONS_00008043-exon-sc0000081-1491911889:424632..425763Clytia hemisphaericaexon
TCONS_00008043-exon-sc0000081-1491911889:424465..424573TCONS_00008043-exon-sc0000081-1491911889:424465..424573Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000081supercontigsc0000081:424465..425763 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0343777	0.100571	0.116772	0.114244	0.278161	0.183172	2.25409	3.3102	2.0858	3.19361	3.37843	1.74005	4.75561	4.39263	3.0062	3.3937	1.93554	3.17418	3.39861	4.35946	2.06077	1.9455	1.30075	1.54093	3.13733	3.39293	5.42094	3.26999	5.18929	4.23742
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008043 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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