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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008031 ID=TCONS_00008031|Name=TCONS_00008031|organism=Clytia hemisphaerica|type=transcript|length=2141bpRun BLAST on NCBI protein sequence of TCONS_00008031-protein >TCONS_00008031-protein ID=TCONS_00008031-protein|Name=TCONS_00008031-protein|organism=Clytia hemisphaerica|type=polypeptide|length=380bp RAETETKAKLEKVAEIKKINAQMMAIKSEIAKNEDLLKEFVLYKKFLDKLRun BLAST on NCBI transcript from alignment at sc0000081:170181..192321- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00008031 ID=TCONS_00008031|Name=TCONS_00008031|organism=Clytia hemisphaerica|type=transcript|length=22141bp|location=Sequence derived from alignment at sc0000081:170181..192321- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000081:170181..192321- >TCONS_00008031 ID=TCONS_00008031|Name=TCONS_00008031|organism=Clytia hemisphaerica|type=CDS|length=16002bp|location=Sequence derived from alignment at sc0000081:170181..192321- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00008031 vs. Swiss-Prot (Human)
Match: CP100 (Cilia- and flagella-associated protein 100 OS=Homo sapiens GN=CFAP100 PE=2 SV=1) HSP 1 Score: 194.512 bits (493), Expect = 5.393e-53 Identity = 174/394 (44.16%), Postives = 250/394 (63.45%), Query Frame = 3
Query: 6 AETETKAKLEKVAEIKKINAQMMAIKSEIAKNEDLLKEFVLYKKFLDKLTPPYIITERKRRKMQEKRLKEKEFAPIEKEPEKHP------LRKKGSTTPADSDRQSRASLR----SKGSRVKSHTSPRKRGSRXXXXXXXXXXXXXX----VKXXXXXXXXXXXLFFKQSHQLLDIFSELEEQNLSLIQNSQDTEEALDEMKKQIVHNKKKMNKETDLLKLQIXXXXXXXXXXXXXXXXXXMKSRMFSFGEFKAEDQEKTLAQLNKKVEEVYRNCIGN-NEANISTLQMLTNIENRLEELFEMIEMMPPDKVELAXXXXXXXXXXXXXXXXXXXXXXXXXXXIKKAIERAQAEPKKKTGRRLVFRSCPPQTRKRXXXXXXXXXXXXXXLKYFFT 1142
AE ETKAK+EK+ EI+ + Q++ IKSEI++ ED LK + +YK FL KL+P + E++++ K+ KE A E P ++ K S+ A + ++ R + R S+ S ++GS+ S S ++ + + + EEP+L+F + QLLD+F ELEEQNLSLIQNSQ+TE+ L+E+ + H + +M++E + LK + T+ + KEE+ AAELE+K+R+F FGE+K + Q+K L LN KV +VYR+C G EAN+ T+QMLT IE++L+EL E +E +P K+E AE+AK+KERR+RLREEKL QK QEE +++A RAQAE KKK GR LV RS PP R ++ H DKEEEEL +FFT
Sbjct: 218 AEKETKAKIEKILEIRDLTTQIVNIKSEISRFEDTLKHYKVYKDFLYKLSPKEWLEEQEKKHSFLKKAKEVSEASKESSVNSTPGDKGPGIKGKASSMWAKEGQGTKKPWRFLQTMRLGRSPSYLSSPQQGSQPSESSGGDSRGSNSPIPPTQEDTDSDGEEPQLYFTEPQQLLDVFRELEEQNLSLIQNSQETEKTLEELSHTLKHTQIRMDREVNQLKQWVTTMMMSITKEEDTAAELELKARVFHFGEYKGDQQDKLLESLNCKVLDVYRHCTGTQQEANLGTVQMLTIIEHQLDELLENLEHVPQVKIEQAERAKEKERRIRLREEKLQMQKILQEEHLQRARARAQAEIKKKRGRTLVCRSRPPAHRIKQQSEHTLMDKEEEELLFFFT 611 The following BLAST results are available for this feature:
BLAST of TCONS_00008031 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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