TCONS_00008030 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008030
Unique NameTCONS_00008030
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1218

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008030 ID=TCONS_00008030|Name=TCONS_00008030|organism=Clytia hemisphaerica|type=transcript|length=1218bp
ATGaaatttgctttattttttactttttttgtttttgagtctCCAGATAT
CATATATAACGAGTCAAGGTTAAACTCAGtgcatttaaaatttttataca
aaCGCGTTCAAATTTCTTTTAGCAAAATTTAATTCTTCGTActtaatttg
taaaatattcgTTGGTTGCTCCGGTCTGGTAGCCGTggattgtttttttt
aatcgaCATAAAAGACAAAAAGTAAAATCCTGGAGAATCAAATTGGTCGA
CGTTCTACTTGATGGTTTCATAGACAGATATTAAAAGCTCGATGAAGatg
gaattttatttttcattcgtATTGAACTTAATGGTATCGTATACCTTAGC
AAAGGCTGTTTCAAAAGATCCTACTAAAGCATCCTCCTCGAAATGTCAAG
ACTCCATCGGTATCCAGACTGGGTTCTTAGAGACACGTGACATCAAAACA
TCCACGTCACAAAAAGATTTCTCTGCTACTGACCCATGGTGTGCTACAGa
gcaaaatgaaaaacaattcaTGGCTTTTGACCTTGGTGAGGAATTCCAAT
TGGCTAAGGTTGCTACTATGGGTAAAGCAGATGATAAAAATCGCTTTGTT
TCGAAATATATTTTAGCATATAGCCATGATGGTGAAAAATGGGATGATTA
TATTGACAGTACCGGTAAAAAGGAATTTGCTGGTAATGATAATACCTTCG
CTGTCAAATCTAACACATTATCACCATCTATTCAAGCAcgttatatcaaa
ataaaaccactGGCATGGAGTAATGGTGGTATATGTACCTCTGTTGATCT
CTTTGGCTGCACGGTTGATGAGCTAAATAAGTCAAAGAAGTCGTAGATGT
ATCGCCCCGGTTGTAAATATGATCAATATAGTTATGATGTGCCGAGTAGA
GATGCTTTTCGGTTTATGGAAATATATCTGAGAGCTTTCATCAAGGTTGC
TCTGGAGCGTTTTTGGCTCCTTTGATAAACAATGAATGAAGAATCGATGC
TGAAAAAAAGGACATCAATGTTAACGTTGTCTATGTTATGTTCTTGATTG
AATAAGCTATATGAATGCTTACGAATATGCCGTCCAAGACAAGCTTGCTT
TCTTTAAACATGTTGGTTTGTTTAATGTAGAGCTAGTGTTGGGCTCATAT
TGAAATAAAGAACTGTacaaagaaattttcacaggCTTTAGATAATGATA
CTGAATTTTGaattgata
Run BLAST on NCBI

transcript from alignment at sc0000081:163759..167767-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008030 ID=TCONS_00008030|Name=TCONS_00008030|organism=Clytia hemisphaerica|type=transcript|length=4009bp|location=Sequence derived from alignment at sc0000081:163759..167767- (Clytia hemisphaerica)
ATGAAATTTGCTTTATTTTTTACTTTTTTTGTTTTTGAGTCTCCAGATAT
CATATATAACGAGTCAAGGTTAAACTCAGTGCATTTAAAATTTTTATACA
AACGCGTTCAAATTTCTTTTAGCAAAATTTAATTCTTCGTACTTAATTTG
TAAAATATTCGTTGGTTGCTCCGGTCTGGTAGCCGTGGATTGTTTTTTTT
AATCGACATAAAAGACAAAAAGTAAAATCCTGGAGAATCAAATTGGTCGA
CGTTCTACTTGATGGTTTCATAGACAGATATTAAAAGCTCGATGAAGATG
GAATTTTATTTTTCATTCGTATTGAACTTAATGGTATCGTATACCTTAGC
AAAGGCTGTTTCAAAAGGTAAATTATTTCCCAGTACACGTTTTTTATAAG
AACAAACTATATAAGAACATAAGGCTTCGATGGCCAAAATGTTAAGAACA
AGTTAAGAACATTTTCATAGGAGAATGGACTAAAATGCTCCAAAAACGGT
AAAAATAAGAAAATTTTTAGGCTTGAAATTCAAAAAGTTAAGAACATCCC
AACGCTTCAAAAATTTTGGATGTTCTTATAAAAAAATGTGTATTCTTAAT
CAATAGGGGCATATTCAGGGCTTACCAGGGGACTCGCCCTTATCCAAAGA
ATAACATTTTCATTTTTGGGCTTGTTCACTTATGAAAACCGTAACCTTTT
CTTCAAACTTTCATATTTTAAGAAACATCTAAGTTATAAACCTCAAATTT
TACACGAAGGCTCAGAATCCACTAGGGCATGAGTGTTAAAGATTTCACGA
TGATACGATAAACATCAAAAAAGCTATGTAAAAAATTCTAGGGGTGTGGT
TTTTTTCTGAATCAACTTGTATTTCTTTGGTCATATTGCCTAGACAAACT
GGTTTATTCATACCCTTTTGTCTCGATATTCAGGTTTGAGTATTGCGCCC
GCCATTCTATGATAAAAATAATTGGGATACTAAATTTCCACGATGATACA
ATTTTTGTTAAATTAGGGATTGGAAAAATCTCCAAATGGATTCCCAATCA
CGAAACGATAATATTTCTGTATTTCCAATGAAAATATGCCNTATCGTATA
CCTTAGCAAAGGCTGTTTCAAAAGGTAAATTATTTCCCAGTACACGTTTT
TTATAAGAACAAACTATATAAGAACATAAGGCTTCGATGGCCAAAATGTT
AAGAACAAGTTAAGAACATTTTCATAGGAGAATGGACTAAAATGCTCCAA
AAACGGTAAAAATAAGAAAATTTTTAGGCTTGAAATTCAAAAAGTTAAGA
ACATCCCAACGCTTCAAAAATTTTGGATGTTCTTATAAAAAAATGTGTAT
TCTTAATCAATAGGGGCATATTCAGGGCTTACCAGGGGACTCGCCCTTAT
CCAAAGAATAACATTTTCATTTTTGGGCTTGTTCACTTATGAAAACCGTA
ACCTTTTCTTCAAACTTTCATATTTTAAGAAACATCTAAGTTATAAACCT
CAAATTTTACACGAAGGCTCAGAATCCACTAGGGCATGAGTGTTAAAGAT
TTCACGATGATACGATAAACATCAAAAAAGCTATGTAAAAAATTCTAGGG
GTGTGGTTTTTTTCTGAATCAACTTGTATTTCTTTGGTCATATTGCCTAG
ACAAACTGGTTTATTCATACCCTTTTGTCTCGATATTCAGGTTTGAGTAT
TGCGCCCGCCATTCTATGATAAAAATAATTGGGATACTAAATTTCCACGA
TGATACAATTTTTGTTAAATTAGGGATTGGAAAAATCTCCAAATGGATTC
CCAATCACGAAACGATAATATTTCTGTATTTCCAATGAAAATATGCCGGG
AACTTACCACCAGAGAAAATTTTCAGTCACCAGATTTTATGTGATTTCAA
AGGGATATTCTCCAAGCATAAACTCTTAAATGAGGATTTCCATTTTTGTT
AAATTGCATGATGCCGCCATTATGGAAACAAACGGTCGATTTGCGTAAGG
AATCGCCTCTACAGATTGGAACGTTTACTTCCATAATGGCGGAAATTACG
TGAATGAAAAGCCTCTATGGATACAAAAAATCAAATGATATCGTGTGTTC
TTCTTTCATAGATCCTACTAAAGCATCCTCCTCGAAATGTCAAGACTCCA
TCGGTATCCAGACTGGGTTCTTAGAGACACGTGACATCAAAACATCCACG
TCACAAAAAGATTTCTCTGCTACTGACCCATGGTGTGCTACAGAGCAAAA
TGAAAAACAATTCATGGCTTTTGACCTTGGTGAGGAATTCCAATTGGCTA
AGGTTGCTACTATGGGTAAAGCAGATGATAAAAATCGCTTTGTTTCGAAA
TATATTTTAGCATATAGCCATGATGGTGAAAAATGGGATGATTATATTGA
CAGTACCGGTAAAAAGGTAACCATTGACTTTTAAACTGTTTGGATATAAT
TTTCTTTCACAAGATTGCGGGAGCAGTTAGGTAGAGCCCTGGTTCAACTT
TTCTTCAAAGTAAATAGAAAATTTGTTATCAGCTAAATCCTGCTTAAAAC
TTTTGAAAAAAAGACCGGTTTTAGAGATTCCGAAAGAGTTTTCAAGAGTT
TTCTACCGTTGGTACCAACAATGGTGGCCTCCCTTTAGAAAGTCGGATCA
GGTCCAAAAAGTGAATTTCTGTGGAAAGTGCCAAACTAAAATTCTTCAGG
GAATCATGTAAGGAATTTTCCTTGCTCTAGTCATGACAATTCATGATTTG
CACCATTGCAATGTTTTCCACGGACCCAACAGCTGATTAGTTGAAAGTGA
CGTATTGACAGACTTTACGTCATTTACAACCAATCAGCTATTCGGTCCGT
GATGTAATGTCAGAAGACATTGCAGTATTGCATATCATGAATATTGCTTA
TTAGAAATCCTTCTTATCTCTGCAGGAATTTGCTGGTAATGATAATACCT
TCGCTGTCAAATCTAACACATTATCACCATCTATTCAAGCACGTTATATC
AAAATAAAACCACTGGCATGGAGTAATGGTGGTATATGTACCTCTGTTGA
TCTCTTTGGCTGCACGGGTAAGTCCGTTAGTGGTGCCACAAATTAAAGCC
TTAGCGTATTGTTCGGTAAGACTTTGTTTGAATTCTTTTTTTTCAATCAA
TGCCTTGTCTTGTTCATATGGATATTGTGAGAATTCAATTCGAGAAAGGA
AGTTACTTTCATCCTTGGACGAAAAACGTTATCAAGTTCGGTTTATTAAA
TCTATATTTCAATTCTCATTTATGTTAAAAAACCAGTTGCAACGCTGACT
GGATCTGTTATTTAAATCCATTCGCTTTAAAGTGTGCAGTATTTATTGTT
TAGCCTATTCGCCTACTCAAAGGTCCCGAATAAACGTCTCCCCCTTTTTA
AAAAAAATTCGGATCCCTCTCCCCCTACGTTTATTTATTTTTTGACATTA
TTTTCAGCTATCATAAGCTGAATTGCTCGCAAAATAGCCTGGTTTTAGCT
TAGCTTTTAGCTTGTCCTTGCATTTCCCTCGCTTCTTTTATTCGGGACCT
CAGATATCATTCTATATTCAGTATGATTTTATTTTTTATGTTCCTTATCT
TTTAGTTGATGAGCTAAATAAGTCAAAGAAGTCGTAGATGTATCGCCCCG
GTTGTAAATATGATCAATATAGTTATGATGTGCCGAGTAGAGATGCTTTT
CGGTTTATGGAAATATATCTGAGAGCTTTCATCAAGGTTGCTCTGGAGCG
TTTTTGGCTCCTTTGATAAACAATGAATGAAGAATCGATGCTGAAAAAAA
GGACATCAATGTTAACGTTGTCTATGTTATGTTCTTGATTGAATAAGCTA
TATGAATGCTTACGAATATGCCGTCCAAGACAAGCTTGCTTTCTTTAAAC
ATGTTGGTTTGTTTAATGTAGAGCTAGTGTTGGGCTCATATTGAAATAAA
GAACTGTACAAAGAAATTTTCACAGGCTTTAGATAATGATACTGAATTTT
GAATTGATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004520XLOC_004520Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008030-exon-sc0000081-1575043694:167401..167767TCONS_00008030-exon-sc0000081-1575043694:167401..167767Clytia hemisphaericaexon
TCONS_00008030-exon-sc0000081-1575043694:165352..165656TCONS_00008030-exon-sc0000081-1575043694:165352..165656Clytia hemisphaericaexon
TCONS_00008030-exon-sc0000081-1575043694:164701..164842TCONS_00008030-exon-sc0000081-1575043694:164701..164842Clytia hemisphaericaexon
TCONS_00008030-exon-sc0000081-1575043694:163759..164162TCONS_00008030-exon-sc0000081-1575043694:163759..164162Clytia hemisphaericaexon
TCONS_00008030-exon-sc0000081-1510915933:167401..167767TCONS_00008030-exon-sc0000081-1510915933:167401..167767Clytia hemisphaericaexon
TCONS_00008030-exon-sc0000081-1510915933:165352..165656TCONS_00008030-exon-sc0000081-1510915933:165352..165656Clytia hemisphaericaexon
TCONS_00008030-exon-sc0000081-1510915933:164701..164842TCONS_00008030-exon-sc0000081-1510915933:164701..164842Clytia hemisphaericaexon
TCONS_00008030-exon-sc0000081-1510915933:163759..164162TCONS_00008030-exon-sc0000081-1510915933:163759..164162Clytia hemisphaericaexon
TCONS_00008030-exon-sc0000081-1491911889:167401..167767TCONS_00008030-exon-sc0000081-1491911889:167401..167767Clytia hemisphaericaexon
TCONS_00008030-exon-sc0000081-1491911889:165352..165656TCONS_00008030-exon-sc0000081-1491911889:165352..165656Clytia hemisphaericaexon
TCONS_00008030-exon-sc0000081-1491911889:164701..164842TCONS_00008030-exon-sc0000081-1491911889:164701..164842Clytia hemisphaericaexon
TCONS_00008030-exon-sc0000081-1491911889:163759..164162TCONS_00008030-exon-sc0000081-1491911889:163759..164162Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000081supercontigsc0000081:163759..167767 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	3.12024	2.46566	11.8988	12.0679	1.94977	0.805033	7.03246	0.513652	3.07763	1.59807	0	2.81989	0	2.96717	0	0	2.98277	0	4.42153	1.60793	5.79644	11.8244	1.05754	0	0.856033	0.872162
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008030 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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