TCONS_00008029 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008029
Unique NameTCONS_00008029
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1172

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008029 ID=TCONS_00008029|Name=TCONS_00008029|organism=Clytia hemisphaerica|type=transcript|length=1172bp
ATATCATATATAACGAGTCAAGGTTAAACTCAGtgcatttaaaattttta
tacaaaCGCGTTCAAATTTCTTTTAGCAAAATTTAATTCTTCGTActtaa
tttgtaaaatattcgTTGGTTGCTCCGGTCTGGTAGCCGTggattgtttt
ttttaatcgaCATAAAAGACAAAAAGTAAAATCCTGGAGAATCAAATTGG
TCGACGTTCTACTTGATGGTTTCATAGACAGATATTAAAAGCTCGATGAA
GatggaattttatttttcattcgtATTGAACTTAATGGTATCGTATACCT
TAGCAAAGGCTGTTTCAAAAGATCCTACTAAAGCATCCTCCTCGAAATGT
CAAGACTCCATCGGTATCCAGACTGGGTTCTTAGAGACACGTGACATCAA
AACATCCACGTCACAAAAAGATTTCTCTGCTACTGACCCATGGTGTGCTA
CAGagcaaaatgaaaaacaattcaTGGCTTTTGACCTTGGTGAGGAATTC
CAATTGGCTAAGGTTGCTACTATGGGTAAAGCAGATGATAAAAATCGCTT
TGTTTCGAAATATATTTTAGCATATAGCCATGATGGTGAAAAATGGGATG
ATTATATTGACAGTACCGGTAAAAAGGAATTTGCTGGTAATGATAATACC
TTCGCTGTCAAATCTAACACATTATCACCATCTATTCAAGCAcgttatat
caaaataaaaccactGGCATGGAGTAATGGTGGTATATGTACCTCTGTTG
ATCTCTTTGGCTGCACGGTTGATGAGCTAAATAAGTCAAAGAAGTCGTAG
ATGTATCGCCCCGGTTGTAAATATGATCAATATAGTTATGATGTGCCGAG
TAGAGATGCTTTTCGGTTTATGGAAATATATCTGAGAGCTTTCATCAAGG
TTGCTCTGGAGCGTTTTTGGCTCCTTTGATAAACAATGAATGAAGAATCG
ATGCTGAAAAAAAGGACATCAATGTTAACGTTGTCTATGTTATGTTCTTG
ATTGAATAAGCTATATGAATGCTTACGAATATGCCGTCCAAGACAAGCTT
GCTTTCTTTAAACATGTTGGTTTGTTTAATGTAGAGCTAGTGTTGGGCTC
ATATTGAAATAAAGAACTGTacaaagaaattttcacaggCTTTAGATAAT
GATACTGAATTTTGaattgata
Run BLAST on NCBI

protein sequence of TCONS_00008029-protein

>TCONS_00008029-protein ID=TCONS_00008029-protein|Name=TCONS_00008029-protein|organism=Clytia hemisphaerica|type=polypeptide|length=184bp
MKMEFYFSFVLNLMVSYTLAKAVSKDPTKASSSKCQDSIGIQTGFLETRD
IKTSTSQKDFSATDPWCATEQNEKQFMAFDLGEEFQLAKVATMGKADDKN
RFVSKYILAYSHDGEKWDDYIDSTGKKEFAGNDNTFAVKSNTLSPSIQAR
YIKIKPLAWSNGGICTSVDLFGCTVDELNKSKKS
Run BLAST on NCBI

transcript from alignment at sc0000081:163759..167721-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008029 ID=TCONS_00008029|Name=TCONS_00008029|organism=Clytia hemisphaerica|type=transcript|length=3963bp|location=Sequence derived from alignment at sc0000081:163759..167721- (Clytia hemisphaerica)
ATATCATATATAACGAGTCAAGGTTAAACTCAGTGCATTTAAAATTTTTA
TACAAACGCGTTCAAATTTCTTTTAGCAAAATTTAATTCTTCGTACTTAA
TTTGTAAAATATTCGTTGGTTGCTCCGGTCTGGTAGCCGTGGATTGTTTT
TTTTAATCGACATAAAAGACAAAAAGTAAAATCCTGGAGAATCAAATTGG
TCGACGTTCTACTTGATGGTTTCATAGACAGATATTAAAAGCTCGATGAA
GATGGAATTTTATTTTTCATTCGTATTGAACTTAATGGTATCGTATACCT
TAGCAAAGGCTGTTTCAAAAGGTAAATTATTTCCCAGTACACGTTTTTTA
TAAGAACAAACTATATAAGAACATAAGGCTTCGATGGCCAAAATGTTAAG
AACAAGTTAAGAACATTTTCATAGGAGAATGGACTAAAATGCTCCAAAAA
CGGTAAAAATAAGAAAATTTTTAGGCTTGAAATTCAAAAAGTTAAGAACA
TCCCAACGCTTCAAAAATTTTGGATGTTCTTATAAAAAAATGTGTATTCT
TAATCAATAGGGGCATATTCAGGGCTTACCAGGGGACTCGCCCTTATCCA
AAGAATAACATTTTCATTTTTGGGCTTGTTCACTTATGAAAACCGTAACC
TTTTCTTCAAACTTTCATATTTTAAGAAACATCTAAGTTATAAACCTCAA
ATTTTACACGAAGGCTCAGAATCCACTAGGGCATGAGTGTTAAAGATTTC
ACGATGATACGATAAACATCAAAAAAGCTATGTAAAAAATTCTAGGGGTG
TGGTTTTTTTCTGAATCAACTTGTATTTCTTTGGTCATATTGCCTAGACA
AACTGGTTTATTCATACCCTTTTGTCTCGATATTCAGGTTTGAGTATTGC
GCCCGCCATTCTATGATAAAAATAATTGGGATACTAAATTTCCACGATGA
TACAATTTTTGTTAAATTAGGGATTGGAAAAATCTCCAAATGGATTCCCA
ATCACGAAACGATAATATTTCTGTATTTCCAATGAAAATATGCCNTATCG
TATACCTTAGCAAAGGCTGTTTCAAAAGGTAAATTATTTCCCAGTACACG
TTTTTTATAAGAACAAACTATATAAGAACATAAGGCTTCGATGGCCAAAA
TGTTAAGAACAAGTTAAGAACATTTTCATAGGAGAATGGACTAAAATGCT
CCAAAAACGGTAAAAATAAGAAAATTTTTAGGCTTGAAATTCAAAAAGTT
AAGAACATCCCAACGCTTCAAAAATTTTGGATGTTCTTATAAAAAAATGT
GTATTCTTAATCAATAGGGGCATATTCAGGGCTTACCAGGGGACTCGCCC
TTATCCAAAGAATAACATTTTCATTTTTGGGCTTGTTCACTTATGAAAAC
CGTAACCTTTTCTTCAAACTTTCATATTTTAAGAAACATCTAAGTTATAA
ACCTCAAATTTTACACGAAGGCTCAGAATCCACTAGGGCATGAGTGTTAA
AGATTTCACGATGATACGATAAACATCAAAAAAGCTATGTAAAAAATTCT
AGGGGTGTGGTTTTTTTCTGAATCAACTTGTATTTCTTTGGTCATATTGC
CTAGACAAACTGGTTTATTCATACCCTTTTGTCTCGATATTCAGGTTTGA
GTATTGCGCCCGCCATTCTATGATAAAAATAATTGGGATACTAAATTTCC
ACGATGATACAATTTTTGTTAAATTAGGGATTGGAAAAATCTCCAAATGG
ATTCCCAATCACGAAACGATAATATTTCTGTATTTCCAATGAAAATATGC
CGGGAACTTACCACCAGAGAAAATTTTCAGTCACCAGATTTTATGTGATT
TCAAAGGGATATTCTCCAAGCATAAACTCTTAAATGAGGATTTCCATTTT
TGTTAAATTGCATGATGCCGCCATTATGGAAACAAACGGTCGATTTGCGT
AAGGAATCGCCTCTACAGATTGGAACGTTTACTTCCATAATGGCGGAAAT
TACGTGAATGAAAAGCCTCTATGGATACAAAAAATCAAATGATATCGTGT
GTTCTTCTTTCATAGATCCTACTAAAGCATCCTCCTCGAAATGTCAAGAC
TCCATCGGTATCCAGACTGGGTTCTTAGAGACACGTGACATCAAAACATC
CACGTCACAAAAAGATTTCTCTGCTACTGACCCATGGTGTGCTACAGAGC
AAAATGAAAAACAATTCATGGCTTTTGACCTTGGTGAGGAATTCCAATTG
GCTAAGGTTGCTACTATGGGTAAAGCAGATGATAAAAATCGCTTTGTTTC
GAAATATATTTTAGCATATAGCCATGATGGTGAAAAATGGGATGATTATA
TTGACAGTACCGGTAAAAAGGTAACCATTGACTTTTAAACTGTTTGGATA
TAATTTTCTTTCACAAGATTGCGGGAGCAGTTAGGTAGAGCCCTGGTTCA
ACTTTTCTTCAAAGTAAATAGAAAATTTGTTATCAGCTAAATCCTGCTTA
AAACTTTTGAAAAAAAGACCGGTTTTAGAGATTCCGAAAGAGTTTTCAAG
AGTTTTCTACCGTTGGTACCAACAATGGTGGCCTCCCTTTAGAAAGTCGG
ATCAGGTCCAAAAAGTGAATTTCTGTGGAAAGTGCCAAACTAAAATTCTT
CAGGGAATCATGTAAGGAATTTTCCTTGCTCTAGTCATGACAATTCATGA
TTTGCACCATTGCAATGTTTTCCACGGACCCAACAGCTGATTAGTTGAAA
GTGACGTATTGACAGACTTTACGTCATTTACAACCAATCAGCTATTCGGT
CCGTGATGTAATGTCAGAAGACATTGCAGTATTGCATATCATGAATATTG
CTTATTAGAAATCCTTCTTATCTCTGCAGGAATTTGCTGGTAATGATAAT
ACCTTCGCTGTCAAATCTAACACATTATCACCATCTATTCAAGCACGTTA
TATCAAAATAAAACCACTGGCATGGAGTAATGGTGGTATATGTACCTCTG
TTGATCTCTTTGGCTGCACGGGTAAGTCCGTTAGTGGTGCCACAAATTAA
AGCCTTAGCGTATTGTTCGGTAAGACTTTGTTTGAATTCTTTTTTTTCAA
TCAATGCCTTGTCTTGTTCATATGGATATTGTGAGAATTCAATTCGAGAA
AGGAAGTTACTTTCATCCTTGGACGAAAAACGTTATCAAGTTCGGTTTAT
TAAATCTATATTTCAATTCTCATTTATGTTAAAAAACCAGTTGCAACGCT
GACTGGATCTGTTATTTAAATCCATTCGCTTTAAAGTGTGCAGTATTTAT
TGTTTAGCCTATTCGCCTACTCAAAGGTCCCGAATAAACGTCTCCCCCTT
TTTAAAAAAAATTCGGATCCCTCTCCCCCTACGTTTATTTATTTTTTGAC
ATTATTTTCAGCTATCATAAGCTGAATTGCTCGCAAAATAGCCTGGTTTT
AGCTTAGCTTTTAGCTTGTCCTTGCATTTCCCTCGCTTCTTTTATTCGGG
ACCTCAGATATCATTCTATATTCAGTATGATTTTATTTTTTATGTTCCTT
ATCTTTTAGTTGATGAGCTAAATAAGTCAAAGAAGTCGTAGATGTATCGC
CCCGGTTGTAAATATGATCAATATAGTTATGATGTGCCGAGTAGAGATGC
TTTTCGGTTTATGGAAATATATCTGAGAGCTTTCATCAAGGTTGCTCTGG
AGCGTTTTTGGCTCCTTTGATAAACAATGAATGAAGAATCGATGCTGAAA
AAAAGGACATCAATGTTAACGTTGTCTATGTTATGTTCTTGATTGAATAA
GCTATATGAATGCTTACGAATATGCCGTCCAAGACAAGCTTGCTTTCTTT
AAACATGTTGGTTTGTTTAATGTAGAGCTAGTGTTGGGCTCATATTGAAA
TAAAGAACTGTACAAAGAAATTTTCACAGGCTTTAGATAATGATACTGAA
TTTTGAATTGATA

Coding sequence (CDS) from alignment at sc0000081:163759..167721-

>TCONS_00008029 ID=TCONS_00008029|Name=TCONS_00008029|organism=Clytia hemisphaerica|type=CDS|length=2775bp|location=Sequence derived from alignment at sc0000081:163759..167721- (Clytia hemisphaerica)
TTGATGAGCTAAATAAGTCAAAGAAGTCGTAGGAATTTGCTGGTAATGAT
AATACCTTCGCTGTCAAATCTAACACATTATCACCATCTATTCAAGCACG
TTATATCAAAATAAAACCACTGGCATGGAGTAATGGTGGTATATGTACCT
CTGTTGATCTCTTTGGCTGCACGGATCCTACTAAAGCATCCTCCTCGAAA
TGTCAAGACTCCATCGGTATCCAGACTGGGTTCTTAGAGACACGTGACAT
CAAAACATCCACGTCACAAAAAGATTTCTCTGCTACTGACCCATGGTGTG
CTACAGAGCAAAATGAAAAACAATTCATGGCTTTTGACCTTGGTGAGGAA
TTCCAATTGGCTAAGGTTGCTACTATGGGTAAAGCAGATGATAAAAATCG
CTTTGTTTCGAAATATATTTTAGCATATAGCCATGATGGTGAAAAATGGG
ATGATTATATTGACAGTACCGGTAAAAAGCTTAGCAAAGGCTGTTTCAAA
AGATGAAGATGGAATTTTATTTTTCATTCGTATTGAACTTAATGGTATCG
TATACTTGATGAGCTAAATAAGTCAAAGAAGTCGTAGGAATTTGCTGGTA
ATGATAATACCTTCGCTGTCAAATCTAACACATTATCACCATCTATTCAA
GCACGTTATATCAAAATAAAACCACTGGCATGGAGTAATGGTGGTATATG
TACCTCTGTTGATCTCTTTGGCTGCACGGATCCTACTAAAGCATCCTCCT
CGAAATGTCAAGACTCCATCGGTATCCAGACTGGGTTCTTAGAGACACGT
GACATCAAAACATCCACGTCACAAAAAGATTTCTCTGCTACTGACCCATG
GTGTGCTACAGAGCAAAATGAAAAACAATTCATGGCTTTTGACCTTGGTG
AGGAATTCCAATTGGCTAAGGTTGCTACTATGGGTAAAGCAGATGATAAA
AATCGCTTTGTTTCGAAATATATTTTAGCATATAGCCATGATGGTGAAAA
ATGGGATGATTATATTGACAGTACCGGTAAAAAGCTTAGCAAAGGCTGTT
TCAAAAGATGAAGATGGAATTTTATTTTTCATTCGTATTGAACTTAATGG
TATCGTATACTTGATGAGCTAAATAAGTCAAAGAAGTCGTAGGAATTTGC
TGGTAATGATAATACCTTCGCTGTCAAATCTAACACATTATCACCATCTA
TTCAAGCACGTTATATCAAAATAAAACCACTGGCATGGAGTAATGGTGGT
ATATGTACCTCTGTTGATCTCTTTGGCTGCACGGATCCTACTAAAGCATC
CTCCTCGAAATGTCAAGACTCCATCGGTATCCAGACTGGGTTCTTAGAGA
CACGTGACATCAAAACATCCACGTCACAAAAAGATTTCTCTGCTACTGAC
CCATGGTGTGCTACAGAGCAAAATGAAAAACAATTCATGGCTTTTGACCT
TGGTGAGGAATTCCAATTGGCTAAGGTTGCTACTATGGGTAAAGCAGATG
ATAAAAATCGCTTTGTTTCGAAATATATTTTAGCATATAGCCATGATGGT
GAAAAATGGGATGATTATATTGACAGTACCGGTAAAAAGCTTAGCAAAGG
CTGTTTCAAAAGATGAAGATGGAATTTTATTTTTCATTCGTATTGAACTT
AATGGTATCGTATACTTGATGAGCTAAATAAGTCAAAGAAGTCGTAGGAA
TTTGCTGGTAATGATAATACCTTCGCTGTCAAATCTAACACATTATCACC
ATCTATTCAAGCACGTTATATCAAAATAAAACCACTGGCATGGAGTAATG
GTGGTATATGTACCTCTGTTGATCTCTTTGGCTGCACGGATCCTACTAAA
GCATCCTCCTCGAAATGTCAAGACTCCATCGGTATCCAGACTGGGTTCTT
AGAGACACGTGACATCAAAACATCCACGTCACAAAAAGATTTCTCTGCTA
CTGACCCATGGTGTGCTACAGAGCAAAATGAAAAACAATTCATGGCTTTT
GACCTTGGTGAGGAATTCCAATTGGCTAAGGTTGCTACTATGGGTAAAGC
AGATGATAAAAATCGCTTTGTTTCGAAATATATTTTAGCATATAGCCATG
ATGGTGAAAAATGGGATGATTATATTGACAGTACCGGTAAAAAGCTTAGC
AAAGGCTGTTTCAAAAGATGAAGATGGAATTTTATTTTTCATTCGTATTG
AACTTAATGGTATCGTATACTTGATGAGCTAAATAAGTCAAAGAAGTCGT
AGGAATTTGCTGGTAATGATAATACCTTCGCTGTCAAATCTAACACATTA
TCACCATCTATTCAAGCACGTTATATCAAAATAAAACCACTGGCATGGAG
TAATGGTGGTATATGTACCTCTGTTGATCTCTTTGGCTGCACGGATCCTA
CTAAAGCATCCTCCTCGAAATGTCAAGACTCCATCGGTATCCAGACTGGG
TTCTTAGAGACACGTGACATCAAAACATCCACGTCACAAAAAGATTTCTC
TGCTACTGACCCATGGTGTGCTACAGAGCAAAATGAAAAACAATTCATGG
CTTTTGACCTTGGTGAGGAATTCCAATTGGCTAAGGTTGCTACTATGGGT
AAAGCAGATGATAAAAATCGCTTTGTTTCGAAATATATTTTAGCATATAG
CCATGATGGTGAAAAATGGGATGATTATATTGACAGTACCGGTAAAAAGC
TTAGCAAAGGCTGTTTCAAAAGATGAAGATGGAATTTTATTTTTCATTCG
TATTGAACTTAATGGTATCGTATAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004520XLOC_004520Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008029-exon-sc0000081-1575043694:167424..167721TCONS_00008029-exon-sc0000081-1575043694:167424..167721Clytia hemisphaericaexon
TCONS_00008029-exon-sc0000081-1575043694:166644..166666TCONS_00008029-exon-sc0000081-1575043694:166644..166666Clytia hemisphaericaexon
TCONS_00008029-exon-sc0000081-1575043694:165352..165656TCONS_00008029-exon-sc0000081-1575043694:165352..165656Clytia hemisphaericaexon
TCONS_00008029-exon-sc0000081-1575043694:164701..164842TCONS_00008029-exon-sc0000081-1575043694:164701..164842Clytia hemisphaericaexon
TCONS_00008029-exon-sc0000081-1575043694:163759..164162TCONS_00008029-exon-sc0000081-1575043694:163759..164162Clytia hemisphaericaexon
TCONS_00008029-exon-sc0000081-1510915933:167424..167721TCONS_00008029-exon-sc0000081-1510915933:167424..167721Clytia hemisphaericaexon
TCONS_00008029-exon-sc0000081-1510915933:166644..166666TCONS_00008029-exon-sc0000081-1510915933:166644..166666Clytia hemisphaericaexon
TCONS_00008029-exon-sc0000081-1510915933:165352..165656TCONS_00008029-exon-sc0000081-1510915933:165352..165656Clytia hemisphaericaexon
TCONS_00008029-exon-sc0000081-1510915933:164701..164842TCONS_00008029-exon-sc0000081-1510915933:164701..164842Clytia hemisphaericaexon
TCONS_00008029-exon-sc0000081-1510915933:163759..164162TCONS_00008029-exon-sc0000081-1510915933:163759..164162Clytia hemisphaericaexon
TCONS_00008029-exon-sc0000081-1491911889:167424..167721TCONS_00008029-exon-sc0000081-1491911889:167424..167721Clytia hemisphaericaexon
TCONS_00008029-exon-sc0000081-1491911889:166644..166666TCONS_00008029-exon-sc0000081-1491911889:166644..166666Clytia hemisphaericaexon
TCONS_00008029-exon-sc0000081-1491911889:165352..165656TCONS_00008029-exon-sc0000081-1491911889:165352..165656Clytia hemisphaericaexon
TCONS_00008029-exon-sc0000081-1491911889:164701..164842TCONS_00008029-exon-sc0000081-1491911889:164701..164842Clytia hemisphaericaexon
TCONS_00008029-exon-sc0000081-1491911889:163759..164162TCONS_00008029-exon-sc0000081-1491911889:163759..164162Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008029-proteinTCONS_00008029-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000081supercontigsc0000081:163759..167721 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.294727	0.251479	0.250279	0.244859	2.89127	2.48102	10.4099	11.3449	6.7739	5.69375	9.20379	10.3802	13.0445	13.5419	11.7358	26.724	17.7553	16.3937	0.430789	0.532752	6.4921	11.1542	4.44908	7.99287	8.36403	6.8147	1.16517	0.916507	1.31116	0.627631
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000421FA58C
IPR008979Galactose-bd-like
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008029 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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