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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008023 ID=TCONS_00008023|Name=TCONS_00008023|organism=Clytia hemisphaerica|type=transcript|length=520bp
TTATTTATCAACCATGGAATGGTATCAGGTTttgattttattggtttgtg
TACAATGCGCCATTTTGTTTCCACGGCAACAACAACAATTTAGAAATGGT
GATGAACGAGAGCTTTATATCAAAgtAAAAAGATCATCCTTCTGCAACCG
ACATTTCACCATTTGTGGATGGCAACGAGGGAAACGAGTTTCCGAAACAA
TCGATGATCAAAACGAAATTAGATCGATAGAATCGAGGAACAACCAACTC
GAGAAAAGGTCTCGATATTTTCTCAGTTATTGTCGACAgaaatgttttca
tttaacTACATGGAACGATTTTAGGGACTGTGTAAATCAGTGTTGAGATT
taacttttagttttaaaataGAATTTAATATTAACTTATTTTGAACGCAA
CCTTTCTCACTTATACTTATCTGGCATCTGGCGTAAGATTTTTCTTTCCG
ACTCCCTAAAGCTCTGAGGTCgaaaaaatttcaacatatggaaggtttag
attacggaattttacAGGCG Run BLAST on NCBI protein sequence of TCONS_00008023-protein >TCONS_00008023-protein ID=TCONS_00008023-protein|Name=TCONS_00008023-protein|organism=Clytia hemisphaerica|type=polypeptide|length=114bp
YLSTMEWYQVLILLVCVQCAILFPRQQQQFRNGDERELYIKVKRSSFCNR
HFTICGWQRGKRVSETIDDQNEIRSIESRNNQLEKRSRYFLSYCRQKCFH
LTTWNDFRDCVNQC Run BLAST on NCBI transcript from alignment at sc0000081:114510..115929- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008023 ID=TCONS_00008023|Name=TCONS_00008023|organism=Clytia hemisphaerica|type=transcript|length=1420bp|location=Sequence derived from alignment at sc0000081:114510..115929- (Clytia hemisphaerica)
TTATTTATCAACCATGGAATGGTATCAGGTTTTGATTTTATTGGTTTGTG
TACAATGCGCCATTTTGTTTCCACGGCAACAACAACAATTTAGAAATGGT
GATGAACGAGAGCTTTATATCAAAGTAAGTTAAGACGGTTCCTGTTATAA
TTCATGATATTCATGACGTAATGTTTTCTACGGAAAGACCCCAGTTTTTT
CCAGTTGTGGCAAATTTCATACAACTTTTGTCTAGTTTAAATTTGCCACT
ACTGGCGAAAACCAGGGTATTTCCGTAGAAAACATTACGTCATGAATAAC
ATGAATAGGAAAAATTTTATCAATCCTCAATCTTACTCGCTTGTTTAAAA
CTTGAGAAAATGTTCCAATCACTTTGCCTTTTTTGAGAGCCGCCCTGCTG
TGTACATTGAAACCCATTCAAATCGGAAAATGTTATTCATATTTTAAGGA
TAAAGGGAAGTTACATTGTTTCCGCACGCATCCTTGGGCGTTGGGGGATT
TTTTACTTTTTGAAATTACTTCAGCATCTATTTTTGAAACATTTCCGTTT
GCTTGGCGATTCTAGTAGTGTTCCAGTGATTTTATCGAGTTTTCTCTAAG
CTACCAAAGAATAATTTCTTTCTCTACAAGATATTTTCCTTTTTTATTTT
ATAAGAACTAATAAATTTTGAATCAGCCCGACTCAGCCTCGTTAATCCCT
CACTAACCGGTCAATATTGTATTAAAGTTCAATTCTAAATATTTTCTGAA
TACACTTAATTTCACTTGAAAGGGGCTCAGTACGTTTTATCCATTCCCAG
CAAGCACCCAACATTGTTTCAACGTTCATCTAACGCTATATGAACATTGT
GAACGTCAAATAAACGTCAAAACAACGTTGTGTACCTGCTGGGTTTCTCA
AAATTCTAAAGTTGTTACGTTCCTAGTATCCTAGTATGTTCTTCGGTGAA
AATTTCAGACTTATTCTAATGTAAAATAGCACGCATTCTTTTTCAAGCCA
TTTTTTTGTAATTTTTTTCTTTAGGTAAAAAGATCATCCTTCTGCAACCG
ACATTTCACCATTTGTGGATGGCAACGAGGGAAACGAGTTTCCGAAACAA
TCGATGATCAAAACGAAATTAGATCGATAGAATCGAGGAACAACCAACTC
GAGAAAAGGTCTCGATATTTTCTCAGTTATTGTCGACAGAAATGTTTTCA
TTTAACTACATGGAACGATTTTAGGGACTGTGTAAATCAGTGTTGAGATT
TAACTTTTAGTTTTAAAATAGAATTTAATATTAACTTATTTTGAACGCAA
CCTTTCTCACTTATACTTATCTGGCATCTGGCGTAAGATTTTTCTTTCCG
ACTCCCTAAAGCTCTGAGGTCGAAAAAATTTCAACATATGGAAGGTTTAG
ATTACGGAATTTTACAGGCG Coding sequence (CDS) from alignment at sc0000081:114510..115929- >TCONS_00008023 ID=TCONS_00008023|Name=TCONS_00008023|organism=Clytia hemisphaerica|type=CDS|length=690bp|location=Sequence derived from alignment at sc0000081:114510..115929- (Clytia hemisphaerica)
GTAAAAAGATCATCCTTCTGCAACCGACATTTCACCATTTGTGGATGGCA
ACGAGGGAAACGAGTTTCCGAAACAATCGATGATCAAAACGAAATTAGAT
CGATAGAATCGAGGAACAACCAACTCGAGAAAAGGTCTCGATATTTTCTC
AGTTATTGTCGACAGAAATGTTTTCATTTAACTACATGGAACGATTTTAG
GGACTGTGTAAATCAGTGTTGATATTTATCAACCATGGAATGGTATCAGG
TTTTGATTTTATTGGTTTGTGTACAATGCGCCATTTTGTTTCCACGGCAA
CAACAACAATTTAGAAATGGTGATGAACGAGAGCTTTATATCAAAGTAAA
AAGATCATCCTTCTGCAACCGACATTTCACCATTTGTGGATGGCAACGAG
GGAAACGAGTTTCCGAAACAATCGATGATCAAAACGAAATTAGATCGATA
GAATCGAGGAACAACCAACTCGAGAAAAGGTCTCGATATTTTCTCAGTTA
TTGTCGACAGAAATGTTTTCATTTAACTACATGGAACGATTTTAGGGACT
GTGTAAATCAGTGTTGATATTTATCAACCATGGAATGGTATCAGGTTTTG
ATTTTATTGGTTTGTGTACAATGCGCCATTTTGTTTCCACGGCAACAACA
ACAATTTAGAAATGGTGATGAACGAGAGCTTTATATCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008023-exon-sc0000081-1575043694:115806..115929 | TCONS_00008023-exon-sc0000081-1575043694:115806..115929 | Clytia hemisphaerica | exon |
| TCONS_00008023-exon-sc0000081-1575043694:114510..114905 | TCONS_00008023-exon-sc0000081-1575043694:114510..114905 | Clytia hemisphaerica | exon |
| TCONS_00008023-exon-sc0000081-1510915933:115806..115929 | TCONS_00008023-exon-sc0000081-1510915933:115806..115929 | Clytia hemisphaerica | exon |
| TCONS_00008023-exon-sc0000081-1510915933:114510..114905 | TCONS_00008023-exon-sc0000081-1510915933:114510..114905 | Clytia hemisphaerica | exon |
| TCONS_00008023-exon-sc0000081-1491911889:115806..115929 | TCONS_00008023-exon-sc0000081-1491911889:115806..115929 | Clytia hemisphaerica | exon |
| TCONS_00008023-exon-sc0000081-1491911889:114510..114905 | TCONS_00008023-exon-sc0000081-1491911889:114510..114905 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000081 | supercontig | sc0000081:114510..115929 - |
Blast
The following BLAST results are available for this feature:
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