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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008020 ID=TCONS_00008020|Name=TCONS_00008020|organism=Clytia hemisphaerica|type=transcript|length=2180bp GTTCGTTCCTTATCATTAATTTATTTGTTGCCGTTATTATGGACAATTTT GATTACCTAACACGTGATTGGTCAATCCTCGGCCCACACCATCTAGAAGA ATACGTTCGCACGTGGTCGGAATACGATCCAGACGCCACAGGACGTATGA AGCATGTTGACATTGTCAGTATGTTAAAGAGGATCCAACCGCCGTTAGGT TTTGGGAAATGTTGTCCGCACAGAGAAGCGTGTAAGAGACTTGTTAGTAT GAATATGATCATGAATAACGATGGCACTGTTGATTTTCACGCCACGTTAT TCGCACTGGTCAGGACGTCTCTCAGTATCAAGAAACCGGATGTAAAATCC AACACAGCAAAGGAGAACCTAGAATTGCGAAGTATCATAAAACACATTTG GCCTCGAACAAATGAGAAAATTCTGAATAAAGTTATCCCCAAACCAGACT ccgaAGAAGGCATAACCGTGGGCAAGTTCTACGCCACTTTCTTAATTCAA GAATACTTCCGTCGCTTCAAAAAGAAACGACAAGACGAACGACGTCGTCG AAATGCTGACTCAACAGTTTCACTCAAGGCTGGTTTACGCACCATACAAG ACATTGGTCCCAAATTGAGGCGTAAATTGTCCGGAGAAATTGCTGAGAAT CCCGAAGAAGAAGGAAGACTTGAAAAAGAGAATAAGCGGAAGAGCTTTAT GGACAGTTTCCGACGTTCTTTGGTGTTTGGTGAAGCGGACAAGAAGCGTT CAGCATTTAGTAAACAAAAGGAGGATAGAAGCCAAATGGAGCAACCATTA TTGAATGTTTCAATGAGTTCTGATGACATGAAAAGACATTCGTATCATGG TTCAAGTTCGTATGATAAATCGTCGTTTGAAGACTCTTCTGCTGACCCAG CGGGTAATGACCGTATCGGTGTTGGACAGAAATTCATGAATAAAATGACA CCTTGGAAGAAACCGAAGTCAGATAATGATCTTTCCGATGTTAAAGTACA AGAACAGCGGAACGCAACGCGGAACTATCCGATTCCGGATATAGTTGTCC GGCAGCCGAAAGAAGAAGAGAAAGACTTTAATAAATTTCGTCGGCCATCT TTAAAACTTTTGCCACCGTCAAGTACTATTGATCAGAATTCTGATAATGA TAATATGTCGGTAGTTTCCGAGACTTCTAGTTATACGGGTGATCGTAAAG ACGGAACTACTAGTCCGTATTGAGAGAGTATTTTTTGATGTGCTAAATTG GGCTTCAACTACCCTTGAGAATGCAGTTGTCATTATATTTGCAGTGTGAA TTTGCTGGATGgaaatttttgcgaatttttcgAATGAATCAATGGATTAA GAAAATCTCAGTTTGTGAATGAATGATTGACAGAAGTAcggaaaattaaa tttctacCGGTACTGCAGCAATCTCAATGTCGTTTCATCGGACGAATTCT TTTTTGGAGTTCGCCAAATTTTCCAACAGGTGTCCCATCAAACCTATTTG TCGGCTCCTCGAAGCCGCGTCGCATTTTGGTGCCAGTTCAACGGAACGAG ACTACAATCAGAGCAGGCGACTCGCATCCAAGTTGAACGGATAAAGCGAT AAAAAACATCACCTGATTCCTTGGATTTTTATGAAAGACAGGAGATGCAT AGAATGAGAGAAAGACACTCTACGATGAATAAAGTTTGAATACCAATGTA CGGCTTAGTATGAAAGAGTGCACGAAAATTCTCTGTCCACGAATGATTGA TGGAATGAATGCGCgaatttattttgtattttatatatatagtattttag ttttatttgacatttttttctaaaagacaTGCCTGGATCTCCATACTACT ATTGtacaactttttttgttttaaaagatAAAGAATTTAGATACCTATAC CTCATCTgtatacaaagaaaaagaatttagGAATGTGAATCATCTTTATA TATTATTTGTTGTTTATTATTATAAAATATTAATATTATTTGTCTCTCCC CATTCcccttatattttttattgcttcTTCCGTTTGTTCCACTGAAAAGG CTCTTGGCAATATTAGGAACCATCTACTTGCAAATGATAGATCGGAGCTA TTTTCTTTCGTAATACTGTTCAGGCTAGCAATGTTTGTACTTTGTACCAC AGTGTATCTCTCGTAAAACTTAGCCGTGTT Run BLAST on NCBI transcript from alignment at sc0000081:56575..62063- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008020 ID=TCONS_00008020|Name=TCONS_00008020|organism=Clytia hemisphaerica|type=transcript|length=5489bp|location=Sequence derived from alignment at sc0000081:56575..62063- (Clytia hemisphaerica) GTTCGTTCCTTGTAAGTCTTTCTATACTAACTCTTCTTAATTTTGTTTGG
GCCACTGAGGCAAACTATGGAAGTTTATTTTTATAAATTTCTTTAAATTT
CATTTGAATAATCGAGACTAGAAGTGGCTTTTTAGAATGAAACGAATTTT
CATCTCTAAGTTAAGTAAGGTTCAAAAAAGTTCACCATATCAGAATCATT
ATAAAGAGAGAACGTCACCCAACAGACACTCTTTCCGGAACATCCATCAT
ATGAATTCTGATCCTTCTTTTTCTCCAACAGATCATTAATTTATTTGTTG
CCGTTATTATGGACAATTTTGATTACCTAACACGTGATTGGTCAATCCTC
GGCCCACACCATCTAGAAGAATACGTTCGCACGTGGTCGGAATACGATCC
AGACGCCACGTAAGTTATGTCGCATAATATTTTCACAGTTTAAGACCGTG
CTCAAAAGTTACAGTTTTTAAGCATTGTTCCGGTATGGTTGTTGTTGTTA
CGGATAGGAACTGTTCATATTGGTTTCGGAGCAAGAAACCGGAGCAGTTT
CGTTTTGACCAAAAAAGTGGAACATGCCCGGTGTTTTTTTCGGGTGTTTT
CGTATAAAAGATTACGTCATGAATATCAAGTATAGAGCACGAATCACTTA
GCAGATACCAGCAGCCTAAGAGAAACCTGAAGTTTTTAGAAAATTTACTA
TTTTTCTCTCTTTTTCTTCCCCGTTACATAGAGGACGTATGAAGCATGTT
GACATTGTCAGTATGTTAAAGAGGATCCAACCGCCGTTAGGTTTTGGGAA
ATGTTGTCCGCACAGAGAAGCGTGTAAGAGACTTGTTAGTATGAATATGA
TCATGAATAACGATGGCACTGTTGATTTTCACGCCACGTTATTCGCACTG
GTCAGGACGTCTCTCAGTATCAAGAAACCGGATGGTAAGTCAAACGTTGT
TCCGGGTCCGACATATTTTCTCGATTTTGTTTTGTCGTGGAATTGGTAGG
ATAGTCTTGTATAAAAATATCAAATAAGATGGGGGTGTAACTGGCAACAT
ATTGGCGGTCGTGATAACCATTGAGGCGTTTGCGGCTGCCTTTTGTTATT
ACTTCTTCTATAAGTATCGAAGGGTTCCTTGTGATCACGTTTATTATAAG
GGTCAGTAATATTAAAGCCAAGCCTTAAATTTTTCTTTAATTTATTTTGT
TTTAAATAATATATCTATCTGTGTATTTCTATCTAAAAACCTAAAGCGAT
TTTCTGTAAGGTCTTAAATAGGATTTTACGTGAATGTGAAAAAAGTTTTA
ACTGAAACATGTTGTTATAAACTTTTTTATCTGCAGTAAAATCCAACACA
GCAAAGGAGAACCTAGAATTACGAAGTATCATAANTTTATCTGCAGTAAA
ATCCAACACAGCAAAGGAGAACCTAGAATTGCGAAGTATCATAAAACACA
TTTGGCCTCGAACAAATGAGAAAATTCTGAATAAAGTTATCCCCAAACCA
GACTGTAAGTTCTACCATTCGTTTTTTATTCTTTTGTCTTTGCTACCCTT
TTTACTTGTTATGCTTGTTAATTATTTTTGTACCCAAATTAGCAGGTGCC
AATAAGGGCTTTGGTCGTTTTGATATTCCCTTATCATATTATTTACTGCG
AAATTTGATGCAATGATCCCTTTCAATGTTGCCAATTTTAGTTCAGTTTG
AATTACCTTGAGGGGAAAAATCTTAGAGTCATCACGTTTCCCTATGACAT
TATCAGGGGNTTACCTTGAGGGGAAAAATCTTAGAGTCATCACGTTTCCC
TATGACGTTATCAGGGAAAAAAAGTCAGGATTCTTTCTAAGTTGGGAAAA
AGTTACCTTAAAAAGTTGTGTTGGCATCCAGTTCAAATTGACTTGGACTA
TGGCACTGCAATATCCACCACCCTATTTTCCGCGGTAGAGTTTTAATTGA
TCTACCTTATCTGTCAAAACTTAGTCGGCCTTAATTATTATTCGACTCTA
ATTTTAGTCACCTCGTCAAAATATAGTCACTAAGGGCCGCCTAAGCGGTT
CTATTTACAGTTAATTTGGATCTAATTTTTAGTCGGCCGTAATTTTTAGT
CGGCCCTAATTTTTAGTCGGCCCTAATTTTAGTCATCAAGCCAAAATTTA
GTCACTAAGGGCCGCCTAAGCGGTTCTATTTACAGCTAATTTGGATCTAA
TTTTTAGTCGGCCGTAATTTTTAGTCGGCCCTCTAATTTTAGTCACCAAG
CCAAAATTTAGTCACTTAGGGCCGACTAAGTTTTGGCCGATAAGGTATTT
AAATTATCACGAGGAAAAAAAATTAAGATTTGCTGTCAAGTTCCCCGTCA
CTGAGTCTCTTAGAAGCAGGCCATAAATTTTTCCAATAATAACTGACTTT
ACCTCGTTTTTCTGTTGTTTTTTTTTCAGCCGAAGAAGGCATAACCGTGG
GCAAGTTCTACGCCACTTTCTTAATTCAAGAATACTTCCGTCGCTTCAAA
AAGAAACGACAAGACGAACGACGTCGTCGAAATGCTGACTCAACAGTTTC
ACTCAAGGTACGTTTTTTTCGATGCGTTGGTATTCTGTGGTATTTAGTAT
TTAGATAACACTACAGATCTCTCCTCATTTCAAAGAATTTATTTCGTGAA
GGAGGAAATCTTGTATAGACAGGATTGAACACCTCGCAAATGTTTTTTTT
TAGAGCTAGCATAAAGCTGTATATGAATTACAATTCCTTAAAAGATTTGC
CATTTGATTTTAGAATCCCTTATCGGCCCTTTTAACGTCGGTCCTTATTG
TTGTTACTTTTTGTCGCTGGCCTAATAATGGCCGGTGCTAAATTACGGAC
CGGCGTATAAAGTGCCGATAAGGTAAATAGGCGCAAAAGACGACGAATTT
GTCTTTCTCTTGCAGGCTGGTTTACGCACCATACAAGACATTGGTCCCAA
ATTGAGGCGTAAATTGTCCGGAGAAATTGCTGAGAATCCCGAAGAAGAAG
GAAGACTTGAAAAAGAGGTACTGACCTAATTTGTATTGAGAAACTTTCCG
GAAAGTCTTGAGAAAGACTTTCTGCGAAGTGAGATCGAATTAGAGAAGGA
AGCTAATCGCCGGGATTAACTAATCGAAATTTAATAACGATTAGCGGTAA
TCGGGATTTAATCTGATCGACTTTTGAACAACCGGGCCCTGCGGAATGTT
CCCAATCTAAACTAACGAAACATAAAAATTATTGAATTTTTTTAGCTTTT
TATAAATGCTTTCAAGCTCACCGACCTCTAATTTACTCGCTTTTCAGAAT
AAGCGGAAGAGCTTTATGGACAGTTTCCGACGTTCTTTGGTGTTTGGTGA
AGCGGACAAGAAGCGTTCAGCATTTAGTAAACAAAAGGAGGATAGAAGCC
AAATGGAGCAACCATTATTGAATGTTTCAATGAGTTCTGATGACATGAAA
AGACATTCGTATCATGGTTCAAGTTCGTATGATAAATCGTCGTTTGAAGA
CTCTTCTGCTGACCCAGCGGTAAGGCTCTTCCTCAGTGTCCAAAACTTCT
TCTTTCTCAGATGAATTTCCGTCTCAGTGAAGTAAATAAAGAGGTATTTC
TATCTCAAAATTCTGTATAATTCGCCGAAATTTCAAGCTTATATGCTAAA
TTTCTATTTAAAATCCGTTTTCCGTCTCATACGAAAAACCTTGGTTTGAC
CACTGCAGTCTACGTTAACGAAAAATATTTTCTAAATTTTGAGAGTTCTT
AGTCGGGTTGTGATGCTAAGAAGGATTTGCAAGTAAATACTTTCAGAGTT
TTAGAATCTTTTCGCAGACTATGTGTTTTTCCTTTGATCATTCAATTAAC
TTTGATTGTTACGGTTTGAGGTTCGAATCAAGTCCAAGATCACAGGAATA
AGATCGCATAATTCTAATGTGTATGGTTTAGGGTCTTTCTACATTAACCC
GCTGCAGAGAATATTTGATAATTTTAAGACATTACTCTTTCCTTTTGGGG
AACGAGAAGTGAAGTGTGTCCACGTTTTAGAGCAATTTAATGGAGGTCTG
TTAGCATTGCTAAAGCTACGTACCATCGGATGTCTCCGATATGAAAAATG
ACGAAAGACGTAATCTTAACTTACGCATATTAAGAATTGAGGCTGTATTG
ATTTAATAATTTATTGTACAGAGGATGTTAAAGTGCTTTTATCTTCATCT
TTTCATTTTAGGGTAATGACCGTATCGGTGTTGGACAGAAATTCATGAAT
AAAATGACACCTTGGAAGAAACCGAAGTCAGATAATGATCTTTCCGATGT
TAAAGTACAAGAACAGCGGAACGCAACGCGGAACTATCCGATTCCGGATA
TAGTTGTCCGGCAGCCGAAAGAAGAAGAGAAAGACTTTAATAAATTTCGT
CGGCCATCTTTAAAACTTTTGCCACCGTCAAGTACTATTGATCAGAATTC
TGATAATGATAATATGTCGGTAGTTTCCGAGACTTCTAGTTATACGGGTG
ATCGTAAAGACGGAACTACTAGTCCGTATTGAGAGAGTATTTTTTGATGT
GCTAAATTGGGCTTCAACTACCCTTGAGAATGCAGTTGTCATTATATTTG
CAGTGTGAATTTGCTGGATGGAAATTTTTGCGAATTTTTCGAATGAATCA
ATGGATTAAGAAAATCTCAGTTTGTGAATGAATGATTGACAGAAGTACGG
AAAATTAAATTTCTACCGGTACTGCAGCAATCTCAATGTCGTTTCATCGG
ACGAATTCTTTTTTGGAGTTCGCCAAATTTTCCAACAGGTGTCCCATCAA
ACCTATTTGTCGGCTCCTCGAAGCCGCGTCGCATTTTGGTGCCAGTTCAA
CGGAACGAGACTACAATCAGAGCAGGCGACTCGCATCCAAGTTGAACGGA
TAAAGCGATAAAAAACATCACCTGATTCCTTGGATTTTTATGAAAGACAG
GAGATGCATAGAATGAGAGAAAGACACTCTACGATGAATAAAGTTTGAAT
ACCAATGTACGGCTTAGTATGAAAGAGTGCACGAAAATTCTCTGTCCACG
AATGATTGATGGAATGAATGCGCGAATTTATTTTGTATTTTATATATATA
GTATTTTAGTTTTATTTGACATTTTTTTCTAAAAGACATGCCTGGATCTC
CATACTACTATTGTACAACTTTTTTTGTTTTAAAAGATAAAGAATTTAGA
TACCTATACCTCATCTGTATACAAAGAAAAAGAATTTAGGAATGTGAATC
ATCTTTATATATTATTTGTTGTTTATTATTATAAAATATTAATATTATTT
GTCTCTCCCCATTCCCCTTATATTTTTTATTGCTTCTTCCGTTTGTTCCA
CTGAAAAGGCTCTTGGCAATATTAGGAACCATCTACTTGCAAATGATAGA
TCGGAGCTATTTTCTTTCGTAATACTGTTCAGGCTAGCAATGTTTGTACT
TTGTACCACAGTGTATCTCTCGTAAAACTTAGCCGTGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00008020-exon-sc0000081-1575043694:62053..62063 | TCONS_00008020-exon-sc0000081-1575043694:62053..62063 | Clytia hemisphaerica | exon |
TCONS_00008020-exon-sc0000081-1575043694:61655..61782 | TCONS_00008020-exon-sc0000081-1575043694:61655..61782 | Clytia hemisphaerica | exon |
TCONS_00008020-exon-sc0000081-1575043694:61130..61332 | TCONS_00008020-exon-sc0000081-1575043694:61130..61332 | Clytia hemisphaerica | exon |
TCONS_00008020-exon-sc0000081-1575043694:60560..60667 | TCONS_00008020-exon-sc0000081-1575043694:60560..60667 | Clytia hemisphaerica | exon |
TCONS_00008020-exon-sc0000081-1575043694:59507..59634 | TCONS_00008020-exon-sc0000081-1575043694:59507..59634 | Clytia hemisphaerica | exon |
TCONS_00008020-exon-sc0000081-1575043694:59047..59148 | TCONS_00008020-exon-sc0000081-1575043694:59047..59148 | Clytia hemisphaerica | exon |
TCONS_00008020-exon-sc0000081-1575043694:58545..58766 | TCONS_00008020-exon-sc0000081-1575043694:58545..58766 | Clytia hemisphaerica | exon |
TCONS_00008020-exon-sc0000081-1575043694:56575..57852 | TCONS_00008020-exon-sc0000081-1575043694:56575..57852 | Clytia hemisphaerica | exon |
TCONS_00008020-exon-sc0000081-1510915933:62053..62063 | TCONS_00008020-exon-sc0000081-1510915933:62053..62063 | Clytia hemisphaerica | exon |
TCONS_00008020-exon-sc0000081-1510915933:61655..61782 | TCONS_00008020-exon-sc0000081-1510915933:61655..61782 | Clytia hemisphaerica | exon |
TCONS_00008020-exon-sc0000081-1510915933:61130..61332 | TCONS_00008020-exon-sc0000081-1510915933:61130..61332 | Clytia hemisphaerica | exon |
TCONS_00008020-exon-sc0000081-1510915933:60560..60667 | TCONS_00008020-exon-sc0000081-1510915933:60560..60667 | Clytia hemisphaerica | exon |
TCONS_00008020-exon-sc0000081-1510915933:59507..59634 | TCONS_00008020-exon-sc0000081-1510915933:59507..59634 | Clytia hemisphaerica | exon |
TCONS_00008020-exon-sc0000081-1510915933:59047..59148 | TCONS_00008020-exon-sc0000081-1510915933:59047..59148 | Clytia hemisphaerica | exon |
TCONS_00008020-exon-sc0000081-1510915933:58545..58766 | TCONS_00008020-exon-sc0000081-1510915933:58545..58766 | Clytia hemisphaerica | exon |
TCONS_00008020-exon-sc0000081-1510915933:56575..57852 | TCONS_00008020-exon-sc0000081-1510915933:56575..57852 | Clytia hemisphaerica | exon |
TCONS_00008020-exon-sc0000081-1491911889:62053..62063 | TCONS_00008020-exon-sc0000081-1491911889:62053..62063 | Clytia hemisphaerica | exon |
TCONS_00008020-exon-sc0000081-1491911889:61655..61782 | TCONS_00008020-exon-sc0000081-1491911889:61655..61782 | Clytia hemisphaerica | exon |
TCONS_00008020-exon-sc0000081-1491911889:61130..61332 | TCONS_00008020-exon-sc0000081-1491911889:61130..61332 | Clytia hemisphaerica | exon |
TCONS_00008020-exon-sc0000081-1491911889:60560..60667 | TCONS_00008020-exon-sc0000081-1491911889:60560..60667 | Clytia hemisphaerica | exon |
TCONS_00008020-exon-sc0000081-1491911889:59507..59634 | TCONS_00008020-exon-sc0000081-1491911889:59507..59634 | Clytia hemisphaerica | exon |
TCONS_00008020-exon-sc0000081-1491911889:59047..59148 | TCONS_00008020-exon-sc0000081-1491911889:59047..59148 | Clytia hemisphaerica | exon |
TCONS_00008020-exon-sc0000081-1491911889:58545..58766 | TCONS_00008020-exon-sc0000081-1491911889:58545..58766 | Clytia hemisphaerica | exon |
TCONS_00008020-exon-sc0000081-1491911889:56575..57852 | TCONS_00008020-exon-sc0000081-1491911889:56575..57852 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000081 | supercontig | sc0000081:56575..62063 - |
Blast
BLAST of TCONS_00008020 vs. Swiss-Prot (Human)
Match: CAC1C (Voltage-dependent L-type calcium channel subunit alpha-1C OS=Homo sapiens GN=CACNA1C PE=1 SV=4) HSP 1 Score: 302.753 bits (774), Expect = 7.480e-87 Identity = 147/243 (60.49%), Postives = 192/243 (79.01%), Query Frame = 3
Query: 3 SFLIINLFVAVIMDNFDYLTRDWSILGPHHLEEYVRTWSEYDPDATGRMKHVDIVSMLKRIQPPLGFGKCCPHREACKRLVSMNMIMNNDGTVDFHATLFALVRTSLSIKKPDVKSNTAKENLELRSIIKHIWPRTNEKILNKVIPKPDSEEGITVGKFYATFLIQEYFRRFKKKRQD----ERRRRNADSTVSLKAGLRTIQDIGPKLRRKLSGEIAENPEEEGRLEKENKRKSFMDSFRRS 719
+FLIINLFVAVIMDNFDYLTRDWSILGPHHL+E+ R W+EYDP+A GR+KH+D+V++L+RIQPPLGFGK CPHR ACKRLVSMNM +N+DGTV F+ATLFALVRT+L IK + N + N ELR+IIK IW RT+ K+L++V+P P ++ +TVGKFYATFLIQEYFR+FKK+++ + +RNA +SL+AGLRT+ DIGP++RR +SG++ E + +++ S D FRR+
Sbjct: 1512 AFLIINLFVAVIMDNFDYLTRDWSILGPHHLDEFKRIWAEYDPEAKGRIKHLDVVTLLRRIQPPLGFGKLCPHRVACKRLVSMNMPLNSDGTVMFNATLFALVRTALRIK---TEGNLEQANEELRAIIKKIWKRTSMKLLDQVVP-PAGDDEVTVGKFYATFLIQEYFRKFKKRKEQGLVGKPSQRNA---LSLQAGLRTLHDIGPEIRRAISGDLTAEEELDKAMKEAVSAASEDDIFRRA 1747
The following BLAST results are available for this feature:
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