TCONS_00008019 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00008019
Unique Name	TCONS_00008019
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2180

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000081:56575..62063-

transcript sequence

>TCONS_00008019 ID=TCONS_00008019|Name=TCONS_00008019|organism=Clytia hemisphaerica|type=transcript|length=2180bp
GTTCGTTCCTTATCATTAATTTATTTGTTGCCGTTATTATGGACAATTTT
GATTACCTAACACGTGATTGGTCAATCCTCGGCCCACACCATCTAGAAGA
ATACGTTCGCACGTGGTCGGAATACGATCCAGACGCCACAGGACGTATGA
AGCATGTTGACATTGTCAGTATGTTAAAGAGGATCCAACCGCCGTTAGGT
TTTGGGAAATGTTGTCCGCACAGAGAAGCGTGTAAGAGACTTGTTAGTAT
GAATATGATCATGAATAACGATGGCACTGTTGATTTTCACGCCACGTTAT
TCGCACTGGTCAGGACGTCTCTCAGTATCAAGAAACCGGATGTAAAATCC
AACACAGCAAAGGAGAACCTAGAATTGCGAAGTATCATAAAACACATTTG
GCCTCGAACAAATGAGAAAATTCTGAATAAAGTTATCCCCAAACCAGACT
ccgaAGAAGGCATAACCGTGGGCAAGTTCTACGCCACTTTCTTAATTCAA
GAATACTTCCGTCGCTTCAAAAAGAAACGACAAGACGAACGACGTCGTCG
AAATGCTGACTCAACAGTTTCACTCAAGGCTGGTTTACGCACCATACAAG
ACATTGGTCCCAAATTGAGGCGTAAATTGTCCGGAGAAATTGCTGAGAAT
CCCGAAGAAGAAGGAAGACTTGAAAAAGAGAATAAGCGGAAGAGCTTTAT
GGACAGTTTCCGACGTTCTTTGGTGTTTGGTGAAGCGGACAAGAAGCGTT
CAGCATTTAGTAAACAAAAGGAGGATAGAAGCCAAATGGAGCAACCATTA
TTGAATGTTTCAATGAGTTCTGATGACATGAAAAGACATTCGTATCATGG
TTCAAGTTCGTATGATAAATCGTCGTTTGAAGACTCTTCTGCTGACCCAG
CGGGTAATGACCGTATCGGTGTTGGACAGAAATTCATGAATAAAATGACA
CCTTGGAAGAAACCGAAGTCAGATAATGATCTTTCCGATGTTAAAGTACA
AGAACAGCGGAACGCAACGCGGAACTATCCGATTCCGGATATAGTTGTCC
GGCAGCCGAAAGAAGAAGAGAAAGACTTTAATAAATTTCGTCGGCCATCT
TTAAAACTTTTGCCACCGTCAAGTACTATTGATCAGAATTCTGATAATGA
TAATATGTCGGTAGTTTCCGAGACTTCTAGTTATACGGGTGATCGTAAAG
ACGGAACTACTAGTCCGTATTGAGAGAGTATTTTTTGATGTGCTAAATTG
GGCTTCAACTACCCTTGAGAATGCAGTTGTCATTATATTTGCAGTGTGAA
TTTGCTGGATGgaaatttttgcgaatttttcgAATGAATCAATGGATTAA
GAAAATCTCAGTTTGTGAATGAATGATTGACAGAAGTAcggaaaattaaa
tttctacCGGTACTGCAGCAATCTCAATGTCGTTTCATCGGACGAATTCT
TTTTTGGAGTTCGCCAAATTTTCCAACAGGTGTCCCATCAAACCTATTTG
TCGGCTCCTCGAAGCCGCGTCGCATTTTGGTGCCAGTTCAACGGAACGAG
ACTACAATCAGAGCAGGCGACTCGCATCCAAGTTGAACGGATAAAGCGAT
AAAAAACATCACCTGATTCCTTGGATTTTTATGAAAGACAGGAGATGCAT
AGAATGAGAGAAAGACACTCTACGATGAATAAAGTTTGAATACCAATGTA
CGGCTTAGTATGAAAGAGTGCACGAAAATTCTCTGTCCACGAATGATTGA
TGGAATGAATGCGCgaatttattttgtattttatatatatagtattttag
ttttatttgacatttttttctaaaagacaTGCCTGGATCTCCATACTACT
ATTGtacaactttttttgttttaaaagatAAAGAATTTAGATACCTATAC
CTCATCTgtatacaaagaaaaagaatttagGAATGTGAATCATCTTTATA
TATTATTTGTTGTTTATTATTATAAAATATTAATATTATTTGTCTCTCCC
CATTCcccttatattttttattgcttcTTCCGTTTGTTCCACTGAAAAGG
CTCTTGGCAATATTAGGAACCATCTACTTGCAAATGATAGATCGGAGCTA
TTTTCTTTCGTAATACTGTTCAGGCTAGCAATGTTTGTACTTTGTACCAC
AGTGTATCTCTCGTAAAACTTAGCCGTGTT

Run BLAST on NCBI

transcript from alignment at sc0000081:56575..62063-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00008019 ID=TCONS_00008019|Name=TCONS_00008019|organism=Clytia hemisphaerica|type=transcript|length=5489bp|location=Sequence derived from alignment at sc0000081:56575..62063- (Clytia hemisphaerica)
GTTCGTTCCTTGTAAGTCTTTCTATACTAACTCTTCTTAATTTTGTTTGG
GCCACTGAGGCAAACTATGGAAGTTTATTTTTATAAATTTCTTTAAATTT
CATTTGAATAATCGAGACTAGAAGTGGCTTTTTAGAATGAAACGAATTTT
CATCTCTAAGTTAAGTAAGGTTCAAAAAAGTTCACCATATCAGAATCATT
ATAAAGAGAGAACGTCACCCAACAGACACTCTTTCCGGAACATCCATCAT
ATGAATTCTGATCCTTCTTTTTCTCCAACAGATCATTAATTTATTTGTTG
CCGTTATTATGGACAATTTTGATTACCTAACACGTGATTGGTCAATCCTC
GGCCCACACCATCTAGAAGAATACGTTCGCACGTGGTCGGAATACGATCC
AGACGCCACGTAAGTTATGTCGCATAATATTTTCACAGTTTAAGACCGTG
CTCAAAAGTTACAGTTTTTAAGCATTGTTCCGGTATGGTTGTTGTTGTTA
CGGATAGGAACTGTTCATATTGGTTTCGGAGCAAGAAACCGGAGCAGTTT
CGTTTTGACCAAAAAAGTGGAACATGCCCGGTGTTTTTTTCGGGTGTTTT
CGTATAAAAGATTACGTCATGAATATCAAGTATAGAGCACGAATCACTTA
GCAGATACCAGCAGCCTAAGAGAAACCTGAAGTTTTTAGAAAATTTACTA
TTTTTCTCTCTTTTTCTTCCCCGTTACATAGAGGACGTATGAAGCATGTT
GACATTGTCAGTATGTTAAAGAGGATCCAACCGCCGTTAGGTTTTGGGAA
ATGTTGTCCGCACAGAGAAGCGTGTAAGAGACTTGTTAGTATGAATATGA
TCATGAATAACGATGGCACTGTTGATTTTCACGCCACGTTATTCGCACTG
GTCAGGACGTCTCTCAGTATCAAGAAACCGGATGGTAAGTCAAACGTTGT
TCCGGGTCCGACATATTTTCTCGATTTTGTTTTGTCGTGGAATTGGTAGG
ATAGTCTTGTATAAAAATATCAAATAAGATGGGGGTGTAACTGGCAACAT
ATTGGCGGTCGTGATAACCATTGAGGCGTTTGCGGCTGCCTTTTGTTATT
ACTTCTTCTATAAGTATCGAAGGGTTCCTTGTGATCACGTTTATTATAAG
GGTCAGTAATATTAAAGCCAAGCCTTAAATTTTTCTTTAATTTATTTTGT
TTTAAATAATATATCTATCTGTGTATTTCTATCTAAAAACCTAAAGCGAT
TTTCTGTAAGGTCTTAAATAGGATTTTACGTGAATGTGAAAAAAGTTTTA
ACTGAAACATGTTGTTATAAACTTTTTTATCTGCAGTAAAATCCAACACA
GCAAAGGAGAACCTAGAATTACGAAGTATCATAANTTTATCTGCAGTAAA
ATCCAACACAGCAAAGGAGAACCTAGAATTGCGAAGTATCATAAAACACA
TTTGGCCTCGAACAAATGAGAAAATTCTGAATAAAGTTATCCCCAAACCA
GACTGTAAGTTCTACCATTCGTTTTTTATTCTTTTGTCTTTGCTACCCTT
TTTACTTGTTATGCTTGTTAATTATTTTTGTACCCAAATTAGCAGGTGCC
AATAAGGGCTTTGGTCGTTTTGATATTCCCTTATCATATTATTTACTGCG
AAATTTGATGCAATGATCCCTTTCAATGTTGCCAATTTTAGTTCAGTTTG
AATTACCTTGAGGGGAAAAATCTTAGAGTCATCACGTTTCCCTATGACAT
TATCAGGGGNTTACCTTGAGGGGAAAAATCTTAGAGTCATCACGTTTCCC
TATGACGTTATCAGGGAAAAAAAGTCAGGATTCTTTCTAAGTTGGGAAAA
AGTTACCTTAAAAAGTTGTGTTGGCATCCAGTTCAAATTGACTTGGACTA
TGGCACTGCAATATCCACCACCCTATTTTCCGCGGTAGAGTTTTAATTGA
TCTACCTTATCTGTCAAAACTTAGTCGGCCTTAATTATTATTCGACTCTA
ATTTTAGTCACCTCGTCAAAATATAGTCACTAAGGGCCGCCTAAGCGGTT
CTATTTACAGTTAATTTGGATCTAATTTTTAGTCGGCCGTAATTTTTAGT
CGGCCCTAATTTTTAGTCGGCCCTAATTTTAGTCATCAAGCCAAAATTTA
GTCACTAAGGGCCGCCTAAGCGGTTCTATTTACAGCTAATTTGGATCTAA
TTTTTAGTCGGCCGTAATTTTTAGTCGGCCCTCTAATTTTAGTCACCAAG
CCAAAATTTAGTCACTTAGGGCCGACTAAGTTTTGGCCGATAAGGTATTT
AAATTATCACGAGGAAAAAAAATTAAGATTTGCTGTCAAGTTCCCCGTCA
CTGAGTCTCTTAGAAGCAGGCCATAAATTTTTCCAATAATAACTGACTTT
ACCTCGTTTTTCTGTTGTTTTTTTTTCAGCCGAAGAAGGCATAACCGTGG
GCAAGTTCTACGCCACTTTCTTAATTCAAGAATACTTCCGTCGCTTCAAA
AAGAAACGACAAGACGAACGACGTCGTCGAAATGCTGACTCAACAGTTTC
ACTCAAGGTACGTTTTTTTCGATGCGTTGGTATTCTGTGGTATTTAGTAT
TTAGATAACACTACAGATCTCTCCTCATTTCAAAGAATTTATTTCGTGAA
GGAGGAAATCTTGTATAGACAGGATTGAACACCTCGCAAATGTTTTTTTT
TAGAGCTAGCATAAAGCTGTATATGAATTACAATTCCTTAAAAGATTTGC
CATTTGATTTTAGAATCCCTTATCGGCCCTTTTAACGTCGGTCCTTATTG
TTGTTACTTTTTGTCGCTGGCCTAATAATGGCCGGTGCTAAATTACGGAC
CGGCGTATAAAGTGCCGATAAGGTAAATAGGCGCAAAAGACGACGAATTT
GTCTTTCTCTTGCAGGCTGGTTTACGCACCATACAAGACATTGGTCCCAA
ATTGAGGCGTAAATTGTCCGGAGAAATTGCTGAGAATCCCGAAGAAGAAG
GAAGACTTGAAAAAGAGGTACTGACCTAATTTGTATTGAGAAACTTTCCG
GAAAGTCTTGAGAAAGACTTTCTGCGAAGTGAGATCGAATTAGAGAAGGA
AGCTAATCGCCGGGATTAACTAATCGAAATTTAATAACGATTAGCGGTAA
TCGGGATTTAATCTGATCGACTTTTGAACAACCGGGCCCTGCGGAATGTT
CCCAATCTAAACTAACGAAACATAAAAATTATTGAATTTTTTTAGCTTTT
TATAAATGCTTTCAAGCTCACCGACCTCTAATTTACTCGCTTTTCAGAAT
AAGCGGAAGAGCTTTATGGACAGTTTCCGACGTTCTTTGGTGTTTGGTGA
AGCGGACAAGAAGCGTTCAGCATTTAGTAAACAAAAGGAGGATAGAAGCC
AAATGGAGCAACCATTATTGAATGTTTCAATGAGTTCTGATGACATGAAA
AGACATTCGTATCATGGTTCAAGTTCGTATGATAAATCGTCGTTTGAAGA
CTCTTCTGCTGACCCAGCGGTAAGGCTCTTCCTCAGTGTCCAAAACTTCT
TCTTTCTCAGATGAATTTCCGTCTCAGTGAAGTAAATAAAGAGGTATTTC
TATCTCAAAATTCTGTATAATTCGCCGAAATTTCAAGCTTATATGCTAAA
TTTCTATTTAAAATCCGTTTTCCGTCTCATACGAAAAACCTTGGTTTGAC
CACTGCAGTCTACGTTAACGAAAAATATTTTCTAAATTTTGAGAGTTCTT
AGTCGGGTTGTGATGCTAAGAAGGATTTGCAAGTAAATACTTTCAGAGTT
TTAGAATCTTTTCGCAGACTATGTGTTTTTCCTTTGATCATTCAATTAAC
TTTGATTGTTACGGTTTGAGGTTCGAATCAAGTCCAAGATCACAGGAATA
AGATCGCATAATTCTAATGTGTATGGTTTAGGGTCTTTCTACATTAACCC
GCTGCAGAGAATATTTGATAATTTTAAGACATTACTCTTTCCTTTTGGGG
AACGAGAAGTGAAGTGTGTCCACGTTTTAGAGCAATTTAATGGAGGTCTG
TTAGCATTGCTAAAGCTACGTACCATCGGATGTCTCCGATATGAAAAATG
ACGAAAGACGTAATCTTAACTTACGCATATTAAGAATTGAGGCTGTATTG
ATTTAATAATTTATTGTACAGAGGATGTTAAAGTGCTTTTATCTTCATCT
TTTCATTTTAGGGTAATGACCGTATCGGTGTTGGACAGAAATTCATGAAT
AAAATGACACCTTGGAAGAAACCGAAGTCAGATAATGATCTTTCCGATGT
TAAAGTACAAGAACAGCGGAACGCAACGCGGAACTATCCGATTCCGGATA
TAGTTGTCCGGCAGCCGAAAGAAGAAGAGAAAGACTTTAATAAATTTCGT
CGGCCATCTTTAAAACTTTTGCCACCGTCAAGTACTATTGATCAGAATTC
TGATAATGATAATATGTCGGTAGTTTCCGAGACTTCTAGTTATACGGGTG
ATCGTAAAGACGGAACTACTAGTCCGTATTGAGAGAGTATTTTTTGATGT
GCTAAATTGGGCTTCAACTACCCTTGAGAATGCAGTTGTCATTATATTTG
CAGTGTGAATTTGCTGGATGGAAATTTTTGCGAATTTTTCGAATGAATCA
ATGGATTAAGAAAATCTCAGTTTGTGAATGAATGATTGACAGAAGTACGG
AAAATTAAATTTCTACCGGTACTGCAGCAATCTCAATGTCGTTTCATCGG
ACGAATTCTTTTTTGGAGTTCGCCAAATTTTCCAACAGGTGTCCCATCAA
ACCTATTTGTCGGCTCCTCGAAGCCGCGTCGCATTTTGGTGCCAGTTCAA
CGGAACGAGACTACAATCAGAGCAGGCGACTCGCATCCAAGTTGAACGGA
TAAAGCGATAAAAAACATCACCTGATTCCTTGGATTTTTATGAAAGACAG
GAGATGCATAGAATGAGAGAAAGACACTCTACGATGAATAAAGTTTGAAT
ACCAATGTACGGCTTAGTATGAAAGAGTGCACGAAAATTCTCTGTCCACG
AATGATTGATGGAATGAATGCGCGAATTTATTTTGTATTTTATATATATA
GTATTTTAGTTTTATTTGACATTTTTTTCTAAAAGACATGCCTGGATCTC
CATACTACTATTGTACAACTTTTTTTGTTTTAAAAGATAAAGAATTTAGA
TACCTATACCTCATCTGTATACAAAGAAAAAGAATTTAGGAATGTGAATC
ATCTTTATATATTATTTGTTGTTTATTATTATAAAATATTAATATTATTT
GTCTCTCCCCATTCCCCTTATATTTTTTATTGCTTCTTCCGTTTGTTCCA
CTGAAAAGGCTCTTGGCAATATTAGGAACCATCTACTTGCAAATGATAGA
TCGGAGCTATTTTCTTTCGTAATACTGTTCAGGCTAGCAATGTTTGTACT
TTGTACCACAGTGTATCTCTCGTAAAACTTAGCCGTGTT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_004516	XLOC_004516	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000081	supercontig	sc0000081:56575..62063 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.241471	0.440998	0.276251	0.111025	1.41533	0.4515	0.930839	0.771975	1.65607	0.416885	0.958352	0.697723	1.28131	0.749773	0.345837	0	0.872517	0.170726	3.28494	1.35455	0	0	1.43488	0.00124374	1.27754	1.74529	0.833083	1.1963	2.18965	0.0839305

Blast

[Close]

BLAST of TCONS_00008019 vs. Swiss-Prot (Human)
Match: CAC1C (Voltage-dependent L-type calcium channel subunit alpha-1C OS=Homo sapiens GN=CACNA1C PE=1 SV=4)

HSP 1 Score: 302.753 bits (774), Expect = 7.480e-87
Identity = 147/243 (60.49%), Postives = 192/243 (79.01%), Query Frame = 3

Query:    3 SFLIINLFVAVIMDNFDYLTRDWSILGPHHLEEYVRTWSEYDPDATGRMKHVDIVSMLKRIQPPLGFGKCCPHREACKRLVSMNMIMNNDGTVDFHATLFALVRTSLSIKKPDVKSNTAKENLELRSIIKHIWPRTNEKILNKVIPKPDSEEGITVGKFYATFLIQEYFRRFKKKRQD----ERRRRNADSTVSLKAGLRTIQDIGPKLRRKLSGEIAENPEEEGRLEKENKRKSFMDSFRRS 719
            +FLIINLFVAVIMDNFDYLTRDWSILGPHHL+E+ R W+EYDP+A GR+KH+D+V++L+RIQPPLGFGK CPHR ACKRLVSMNM +N+DGTV F+ATLFALVRT+L IK    + N  + N ELR+IIK IW RT+ K+L++V+P P  ++ +TVGKFYATFLIQEYFR+FKK+++     +  +RNA   +SL+AGLRT+ DIGP++RR +SG++    E +  +++     S  D FRR+
Sbjct: 1512 AFLIINLFVAVIMDNFDYLTRDWSILGPHHLDEFKRIWAEYDPEAKGRIKHLDVVTLLRRIQPPLGFGKLCPHRVACKRLVSMNMPLNSDGTVMFNATLFALVRTALRIK---TEGNLEQANEELRAIIKKIWKRTSMKLLDQVVP-PAGDDEVTVGKFYATFLIQEYFRKFKKRKEQGLVGKPSQRNA---LSLQAGLRTLHDIGPEIRRAISGDLTAEEELDKAMKEAVSAASEDDIFRRA 1747

The following BLAST results are available for this feature:

BLAST of TCONS_00008019 vs. Swiss-Prot (Human)

BLAST of TCONS_00008019 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CAC1C	7.480e-87	60.49	Voltage-dependent L-type calcium channel subunit a...	[more]

You are here

TCONS_00008019 (transcript) - C. hemisphaerica