|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007992 ID=TCONS_00007992|Name=TCONS_00007992|organism=Clytia hemisphaerica|type=transcript|length=2032bp TTTAGTTACAATTTTTAGCATAGCATCGTCAGTGTGAGGACAGTTGGTCG TCGAGTCATCTAAAAGAGTATAACAAGGTTCTGCCAAATAACGAGCCTAC CGCCGTTACCAACAACAACGCTAACAACAACGTTATTAACGCCAAGAAGC AACCTGTCAATCAAAATACATCATCGACAACAACATTAAAAATGGCTGAA TACCCAGATCTTTCCAAACACAACAACTGGATGTCCAGAGTCATGAACAA AGAATTGTTcgacaaaatgtcaaaattgaaaacaccAAATGGTGTCACTT TTGAACAAATCATTAAAACTGGTATTGCAAACCCAGGGCATCCTTTCATC GTAACCGTGGGTTGCGTTGCCGGTGATGAAGAATCGTATGAGACATTCAA GGAATTTTTCGATCCCGTAATTGAAGGACGCCACAACGGATACAAACCCG ACGCTAAACACAAGACTGACTTGAACTTTGAAAATCTCAAAGGAGGTGAT GATTTGGACCCCAATTTTGTTATTTCAAGCCGTGTCCGTACTGGAAGAAG TATCCGTGGTTTGAACTTGCCACCTGTCTGTAACATTCAAGAAAGACGAG ATGTAGAAGAGATTGTCACCAAAGCTTTGGGAGCCCTTGGTGGTGACTTT GCTGGAAAATACTACCCATTGACTGGTATGTCCGAAGAAGATCAAAACCA ACTTATCGAAGACCATTTCTTATTCGATAAACCCGTTTCCCCTTTACTCA CTGCTTCTGGTATGGCACGTGACTGGCCCGATGCACGTGGTATCTGGCAT AACAAAGACAAGAACTTCTTAGTGTGGGTCAACGAAGAAGATCATATCCG AGTTATCTCCATGGAGAAGAGTGGAAACATGCGAGAAGTATTCAATCGAT TCTGTAAAGGTTTAGCTATGTTTGAAGAACAAATGAAAGGAAATGGTCAC TCCTTCATGTGGAATGAACATTTGGGTTTCGTTTTGACTTGTCCATCTAA TCTTGgAACTGGTATCAGAGCTGGAGTGCACGTCAAACTCCCACTTTTGG CAAAACATTCCGAATTCGACAACATTCTCAAGAAACTCAGACTCCAAAAG AGAGGAACCGGAGGTGTTGATACTGCAGCTGAAGGCGGTACTTTCGATAT CTCTAATGCTGATCGTTTGGGATTTTCCGAAGTCGCACTTGTCCAATTAG TCGTGGATGGTGTCGGCCTTTTGGTCCGTATGGAGAAAGAATTGATGAAC AAAGGGGATATCACTTCCTTGATCCCCAACTAAGAATCTTTCTCTCCACA TGGTCCATTTAGAACCAGATTTAGTCATTTAGTGTATCAAATTTATATCA TTCTTTCGCACACATTGTCGTATTAATTCCTTTATAATATTTAAATCatg tacacaatttttttttgtatatttttcaaaCATACCCACGCGTTAACTTT TAGCCATNTATCatgtacacaattttttttgtatatttttcaaaCATACC CACGCGTCAACTTTTAGCCATAACCTGAAACCTTATAGAACAGAAATCTT GTAATAATTAGTTTTCAGTGCTTCGATATCAGCCTTCAGCCCTTTGTTCA TGCTTCAAAAGAACTTTTGGGAAGAAATATGATATTCTAAATGCCCTTGT TGAACTCAATTCCTAATGTGCATCGGCCCCAAATTTGAAATGAGTATTTA TCATAGATTTTTCGTCCTTTTTTTGTCTTTTAATGCTTGGTTTGATAATT CAATTTGTAAATATAATTGTAAAGTGATCGAATACAAAATCTATTTAATG TAAGAAAAGAAAAGCACAGGAAAACTAATCTCAATGAAAAAGTCTCACTA CTTTACCCACACCCTTATGAATCCATACCCTCCTTCTTGCCTCTTCCCTA ATTTGAGCCCATATGGCGGTTCAAGTTATTTATCGGAGGCATGGCGATCG CAACAGCTATAGCCAAATGATTGGTTGGTCTGTTCGCCGTCCAACTATAT ATGTCACCCTATGAATAACCTTTAATtataat Run BLAST on NCBI transcript from alignment at sc0000081:307830..313679+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007992 ID=TCONS_00007992|Name=TCONS_00007992|organism=Clytia hemisphaerica|type=transcript|length=5850bp|location=Sequence derived from alignment at sc0000081:307830..313679+ (Clytia hemisphaerica) TTTAGTTACAATTTTTAGCATAGCATCGTCAGTGTGAGGACAGTTGGTCG
TCGAGTCATCTAAAAGAGTATAACAAGGTGGAGTATCAAATAATTGGGTT
GGGTCAAAGctattaccttatcggccttaattattagtcggccctaagtt
tAGTCatctcgtcaaaatttagtcactaagggccgactcaTAATTAAGAC
CGAATAAAAATTAGTGggttaaggaaagcttaattataaacttttagttt
ggcccaaatttttagtcggccctaactttagtcacctcgtcaaaatttag
tcacttagggtcGACTAAGTTCTGGCCGATTATACAATCTAACATATTGG
TGGGTAATTAGTATTATTTGGTCTGTTATTCATGTTTCAGTCTCAAGAAT
GTATTTTTCGCTCATCGTATCCTACAGTATATTTCATGCCCTTAGGGTTC
GGGGGTCTGACCAAAAAAGATTAAACAGTGAGATTAGTATTtgcagtaca
cgtttttttataagaacatctagaATCTTTGAAGAGTTCGGATAtttcga
gttttaagccttaaaaatgttcttaagatgttcttatttcaccattttgt
gaatatttttgtcatttttctaagaaaccggctgttttagagtcggcaaa
gccttaaaatgttcttaacttgctcttaacatttcGGTCACCgtagcctt
atgttcttatatagtttgttcttataaaaagcgtgtacgtACTAGAATAG
ATACTATTTTCGAAGAAAGTGTGGAAAGGAGTCCTTGTACTGTCACGGAA
TTTTTAGAAACCTAAGTAATCGAAGATTCTCTGGACTCAGTTCTTCAGTA
TAAAACcatgattttttattgaaatgccACCGCAGCAGACCGATCAAATT
AATTGTTAAAATGGCCTTAAAAAGTTATGCTGATAGCTGTAACTTTTGTT
AGAATAATgtctatgaatttttgaaacgaattttcagttataatatCCTT
AAGCATGCGTTTAGCTCCCTGCAGTGACAATAACCATATGTGACTCTAAT
GAATCCTTCAATTTTTCTCTTAGAAGGTTCTGCCAAATAACGAGCCTACC
GCCGTTACCAACAACAACGCTAACAACAACGTTATTAACGCCAAGAAGCA
ACCTGTCAATCAAAATACATCATCGACAACAACATTAAAAATGGCTGAAT
ACCCAGATCTTTCCAAACACAACAACTGGATGTCCAGAGTCATGAACAAA
GAATTGTTcgacaaaatgtcaaaattgaaaacaccAAATGGTGTCACTTT
TGAACAAATCATTAAAACTGGTATTGCAAACCCAGGGCATCCTTTCATCG
TAACCGTGGGTTGCGTTGCCGGTGATGAAGAATCGTATGAGACATTCAAG
GAATTTTTCGATCCCGTAATTGAAGGACGCCACAACGGTGAGTCAAAAAA
AGCTCATATATAAGATCATGTGAGCTCTGTTCACccgtatatatatatat
agtctagaagtataaaaccttcaactactcaaaatggaaacaatatagac
aaaaacccacaaaacaaaaagacaatacaaatacaacaaaaatctagaat
gaacattcacagaaaatcaatcaggttggagtagaaaaggaaaatatgat
gaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtcctcagttttcg
acctacacaggatttcggccatttgtgaaaatatcctcctatatgatgga
aagatggaaatatatatataatagtTGTAGTGtcttttataaatatttca
aatttagtGTTTTTACAGCGGCCGGTAGCACGATGCTAGCGAGCCGGGCT
CAAAATCACTAACATATTactttggtggttcgagccagTGTCAAATCTGC
AATTTTGAATAAAACTCTATGTCGCTGATCTAAGCATTTAGCTACATGTG
TTCAAAATACAAATTTCAGTTACACGAAAGATTTTCTGAAATGTTTACTT
ACCCTGATGCTAAAATAACAATATGGATAGAATCACAGTAAAGTTTACTa
taatttgaataaatacaCTTGATCTACTCAGCTGTCAGAATCTTTCAAAG
ATTCGATGAAAATCCTTAAGATGGTCCTTGAGAGTATTATATAAGCGCTG
CTAAGATAAAGTCTATATATCTTcattccaatctatgatttgtagGATAC
AAACCCGACGCTAAACACAAGACTGACTTGAACTTTGAAAATCTCAAAGG
AGGTGATGATTTGGACCCCAATTTTGTTATTTCAAGCCGTGTCCGTACTG
GAAGAAGTATCCGTGGTTTGAACTTGCCACCTGTCTGTAACATTCAAGAA
AGACGAGATGTAGAAGAGATTGTCACCAAAGCTTTGGGAGCCCTTGGTGG
TGACTTTGCTGGTAAGTGACGTGTTTTATACAAAAACAGTACCTTATTTC
TGCTTAAACTATTATTCGCGAatccaaaatctaaaaatttcgcaTGCACT
AAatttaccctcttttttatccaaattctttcatttttttaggttttttg
aaaaaaaatttgatttaaaatttttctaataTTCGCGAAAACTAATCcgc
gcgaaatttaatccacttgaCTTGAGGTAGAGAATGTGTCTCTCTTACGT
TACAAAGCTCGTACCCAGTTCCTTAATTCGCTTTTTTATGAGTTTAGTAT
GTCAGCCTTTTCTAAAGAAATTCATAGTCGATGGATTTCTTTTCCAGGAA
AATACTACCCATTGACTGGTATGTCCGAAGAAGATCAAAACCAACTTATC
GAAGACCATTTCTTATTCGATAAACCCGTTTCCCCTTTACTCACTGCTTC
TGGTATGGCACGTGACTGGCCCGATGCACGTGGTATCTGGCATAACAAAG
ACAAGAACTTCTTAGTGTGGGTCAACGAAGAAGATCATATCCGAGTTATC
TCCATGGAGAAGAGTGGAAACATGCGAGAAGTATTCAATCGATTCTGTAA
AGGTTTAGCTATGTTTGAAGAACAAATGAAAGGAAATGGTCACTCCTTCA
TGTGGAATGAACATTTGGGTTTCGTTTTGACTTGTCCATCTAATCTTGGT
AAGTTTGACCACACTTTGGTCTATCCCatctgacacacaacgttgtttca
aagtttatctaacgttcacaacgtccatatatcgttaaatgaacgttgaa
aaacgttgtgtgcctgctGGGATTTCCCTGACCCTCAAATAAGCTATACA
CATTTTCTTTTGTAAGAACcaatacagttgatgctctctagtTTGACATT
CTACTATTCCATATCCAGCTGgcgcacaacgttgtttcaacgttcattta
acgttatatggactttgtgaacattaaataaacgttgaaacaactgtgcc
agctgggtatgcTTTATTTCTCAATAATGTTGAAAGTCTCCGTCAACATA
ATCTCTCATAAGTGATGTTCTGCCATTCCATTCTCTCtagttttgaattt
gtttttagaCTTCGGTCAAAATTGAGTGCGTTCTATTCTTATGAAAACCT
TTAGTAAAGCTATTAAAATACCCTCAAATTTTTTTCGCGACTCTCTAAGT
AATAAAGtatattcttttcttttcaggAACTGGTATCAGAGCTGGAGTGC
ACGTCAAACTCCCACTTTTGGCAAAACATTCCGAATTCGACAACATTCTC
AAGAAACTCAGACTCCAAAAGAGAGGTAAGTAGCTTTGTTAAAGCCATAG
CTGGAACAACCgatagttaaattccgctgtctCTTTCCAAATAGCATACA
AAGCTTATTGTTTAAAAACAAACCTACAGTATCTATTCAAAAATTCCTTA
AGAGTAGAAATCTAATTGACGAACACTGCTCCAAGCTCCAAGCTCCTCCA
CTCCTCCATTGAACCCATGTTCTTGGACTAAGGAACACGTCAAAATGACT
CATTTTCTGCGAATAGAGGATAATGTACCCATACCATACTATAATGAAGT
ATAGTACACTCTAATTCTACACATGTCAAATTTATAACGCATTCTAATCA
AAAATTTACATATCTTTTACAGGAACCGGAGGTGTTGATACTGCAGCTGA
AGGCGGTACTTTCGATATCTCTAATGCTGATCGTTTGGGATTTTCCGAAG
TCGCACTTGTCCAATTAGTCGTGGATGGTGTCGGCCTTTTGGTCCGTATG
GAGAAAGAATTGATGAACAAAGGGGATATCACTTCCTTGATCCCCAACTA
AGAATCTTTCTCTCCACATGGTCCATTTAGAACCAGATTTAGTCATTTAG
TGTATCAAATTTATATCATTCTTTCGCACACATTGTCGTATTAATTCCTT
TATAATATTTAAATCatgtacacaatttttttttgtatatttttcaaaCA
TACCCACGCGTTAACTTTTAGCCATNTATCatgtacacaattttttttgt
atatttttcaaaCATACCCACGCGTCAACTTTTAGCCATAACCTGAAACC
TTATAGAACAGAAATCTTGTAATAATTAGTTTTCAGTGCTTCGATATCAG
CCTTCAGCCCTTTGTTCATGCTTCAAAAGAACTTTTGGGAAGAAATATGA
TATTCTAAATGCCCTTGTTGAACTCAATTCCTAATGTGCATCGGCCCCAA
ATTTGAAATGAGTATTTATCATAGATTTTTCGTCCTTTTTTTGTCTTTTA
ATGCTTGGTTTGATAATTCAATTTGTAAATATAATTGTAAAGTGATCGAA
TACAAAATCTATTTAATGTAAGAAAAGAAAAGCACAGGAAAACTAATCTC
AATGAAAAAGTCTCACTACTTTACCCACACCCTTATGAATCCATACCCTC
CTTCTTGCCTCTTCCCTAATTTGAGCCCATATGGCGGTTCAAGTTATTTA
TCGGAGGCATGGCGATCGCAACAGCTATAGCCAAATGATTGGTTGGTCTG
TTCGCCGTCCAACTATATATGTCACCCTATGAATAACCTTTAATtataat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00007992-exon-sc0000081-1491911889:307830..307906 | TCONS_00007992-exon-sc0000081-1491911889:307830..307906 | Clytia hemisphaerica | exon |
TCONS_00007992-exon-sc0000081-1510915933:307830..307906 | TCONS_00007992-exon-sc0000081-1510915933:307830..307906 | Clytia hemisphaerica | exon |
TCONS_00007992-exon-sc0000081-1575043694:307830..307906 | TCONS_00007992-exon-sc0000081-1575043694:307830..307906 | Clytia hemisphaerica | exon |
TCONS_00007992-exon-sc0000081-1491911889:308906..309266 | TCONS_00007992-exon-sc0000081-1491911889:308906..309266 | Clytia hemisphaerica | exon |
TCONS_00007992-exon-sc0000081-1510915933:308906..309266 | TCONS_00007992-exon-sc0000081-1510915933:308906..309266 | Clytia hemisphaerica | exon |
TCONS_00007992-exon-sc0000081-1575043694:308906..309266 | TCONS_00007992-exon-sc0000081-1575043694:308906..309266 | Clytia hemisphaerica | exon |
TCONS_00007992-exon-sc0000081-1491911889:310875..311090 | TCONS_00007992-exon-sc0000081-1491911889:310875..311090 | Clytia hemisphaerica | exon |
TCONS_00007992-exon-sc0000081-1510915933:310875..311090 | TCONS_00007992-exon-sc0000081-1510915933:310875..311090 | Clytia hemisphaerica | exon |
TCONS_00007992-exon-sc0000081-1575043694:310875..311090 | TCONS_00007992-exon-sc0000081-1575043694:310875..311090 | Clytia hemisphaerica | exon |
TCONS_00007992-exon-sc0000081-1491911889:311427..311777 | TCONS_00007992-exon-sc0000081-1491911889:311427..311777 | Clytia hemisphaerica | exon |
TCONS_00007992-exon-sc0000081-1510915933:311427..311777 | TCONS_00007992-exon-sc0000081-1510915933:311427..311777 | Clytia hemisphaerica | exon |
TCONS_00007992-exon-sc0000081-1575043694:311427..311777 | TCONS_00007992-exon-sc0000081-1575043694:311427..311777 | Clytia hemisphaerica | exon |
TCONS_00007992-exon-sc0000081-1491911889:312306..312404 | TCONS_00007992-exon-sc0000081-1491911889:312306..312404 | Clytia hemisphaerica | exon |
TCONS_00007992-exon-sc0000081-1510915933:312306..312404 | TCONS_00007992-exon-sc0000081-1510915933:312306..312404 | Clytia hemisphaerica | exon |
TCONS_00007992-exon-sc0000081-1575043694:312306..312404 | TCONS_00007992-exon-sc0000081-1575043694:312306..312404 | Clytia hemisphaerica | exon |
TCONS_00007992-exon-sc0000081-1491911889:312752..313679 | TCONS_00007992-exon-sc0000081-1491911889:312752..313679 | Clytia hemisphaerica | exon |
TCONS_00007992-exon-sc0000081-1510915933:312752..313679 | TCONS_00007992-exon-sc0000081-1510915933:312752..313679 | Clytia hemisphaerica | exon |
TCONS_00007992-exon-sc0000081-1575043694:312752..313679 | TCONS_00007992-exon-sc0000081-1575043694:312752..313679 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000081 | supercontig | sc0000081:307830..313679 + |
Blast
BLAST of TCONS_00007992 vs. Swiss-Prot (Human)
Match: KCRM (Creatine kinase M-type OS=Homo sapiens GN=CKM PE=1 SV=2) HSP 1 Score: 513.072 bits (1320), Expect = 8.949e-177 Identity = 252/360 (70.00%), Postives = 293/360 (81.39%), Query Frame = 3
Query: 198 EYPDLSKHNNWMSRVMNKELFDKMSKLKTPNGVTFEQIIKTGIANPGHPFIVTVGCVAGDEESYETFKEFFDPVIEGRHNGYKPDAKHKTDLNFENLKGGDDLDPNFVISSRVRTGRSIRGLNLPPVCNIQERRDVEEIVTKALGALGGDFAGKYYPLTGMSEEDQNQLIEDHFLFDKPVSPLLTASGMARDWPDARGIWHNKDKNFLVWVNEEDHIRVISMEKSGNMREVFNRFCKGLAMFEEQMKGNGHSFMWNEHLGFVLTCPSNLGTGIRAGVHVKLPLLAKHSEFDNILKKLRLQKRGTGGVDTAAEGGTFDISNADRLGFSEXXXXXXXXXXXXXXXRMEKELMNKGDITSLIP 1277
EYPDLSKHNN M++V+ EL+ K+ +TP+G T + +I+TG+ NPGHPFI+TVGCVAGDEESYE FKE FDP+I RH GYKP KHKTDLN ENLKGGDDLDPN+V+SSRVRTGRSI+G LPP C+ ERR VE++ +AL +L G+F GKYYPL M+E++Q QLI+DHFLFDKPVSPLL ASGMARDWPDARGIWHN +K+FLVWVNEEDH+RVISMEK GNM+EVF RFC GL EE K GH FMWN+HLG+VLTCPSNLGTG+R GVHVKL L+KH +F+ IL +LRLQKRGTGGVDTAA G FD+SNADRLG SEV VQLVVDGV L+V MEK+L I +IP
Sbjct: 19 EYPDLSKHNNHMAKVLTLELYKKLRDKETPSGFTVDDVIQTGVDNPGHPFIMTVGCVAGDEESYEVFKELFDPIISDRHGGYKPTDKHKTDLNHENLKGGDDLDPNYVLSSRVRTGRSIKGYTLPPHCSRGERRAVEKLSVEALNSLTGEFKGKYYPLKSMTEKEQQQLIDDHFLFDKPVSPLLLASGMARDWPDARGIWHNDNKSFLVWVNEEDHLRVISMEKGGNMKEVFRRFCVGLQKIEEIFKKAGHPFMWNQHLGYVLTCPSNLGTGLRGGVHVKLAHLSKHPKFEEILTRLRLQKRGTGGVDTAAVGSVFDVSNADRLGSSEVEQVQLVVDGVKLMVEMEKKLEKGQSIDDMIP 378
The following BLAST results are available for this feature:
|