TCONS_00007992 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007992
Unique NameTCONS_00007992
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2032

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007992 ID=TCONS_00007992|Name=TCONS_00007992|organism=Clytia hemisphaerica|type=transcript|length=2032bp
TTTAGTTACAATTTTTAGCATAGCATCGTCAGTGTGAGGACAGTTGGTCG
TCGAGTCATCTAAAAGAGTATAACAAGGTTCTGCCAAATAACGAGCCTAC
CGCCGTTACCAACAACAACGCTAACAACAACGTTATTAACGCCAAGAAGC
AACCTGTCAATCAAAATACATCATCGACAACAACATTAAAAATGGCTGAA
TACCCAGATCTTTCCAAACACAACAACTGGATGTCCAGAGTCATGAACAA
AGAATTGTTcgacaaaatgtcaaaattgaaaacaccAAATGGTGTCACTT
TTGAACAAATCATTAAAACTGGTATTGCAAACCCAGGGCATCCTTTCATC
GTAACCGTGGGTTGCGTTGCCGGTGATGAAGAATCGTATGAGACATTCAA
GGAATTTTTCGATCCCGTAATTGAAGGACGCCACAACGGATACAAACCCG
ACGCTAAACACAAGACTGACTTGAACTTTGAAAATCTCAAAGGAGGTGAT
GATTTGGACCCCAATTTTGTTATTTCAAGCCGTGTCCGTACTGGAAGAAG
TATCCGTGGTTTGAACTTGCCACCTGTCTGTAACATTCAAGAAAGACGAG
ATGTAGAAGAGATTGTCACCAAAGCTTTGGGAGCCCTTGGTGGTGACTTT
GCTGGAAAATACTACCCATTGACTGGTATGTCCGAAGAAGATCAAAACCA
ACTTATCGAAGACCATTTCTTATTCGATAAACCCGTTTCCCCTTTACTCA
CTGCTTCTGGTATGGCACGTGACTGGCCCGATGCACGTGGTATCTGGCAT
AACAAAGACAAGAACTTCTTAGTGTGGGTCAACGAAGAAGATCATATCCG
AGTTATCTCCATGGAGAAGAGTGGAAACATGCGAGAAGTATTCAATCGAT
TCTGTAAAGGTTTAGCTATGTTTGAAGAACAAATGAAAGGAAATGGTCAC
TCCTTCATGTGGAATGAACATTTGGGTTTCGTTTTGACTTGTCCATCTAA
TCTTGgAACTGGTATCAGAGCTGGAGTGCACGTCAAACTCCCACTTTTGG
CAAAACATTCCGAATTCGACAACATTCTCAAGAAACTCAGACTCCAAAAG
AGAGGAACCGGAGGTGTTGATACTGCAGCTGAAGGCGGTACTTTCGATAT
CTCTAATGCTGATCGTTTGGGATTTTCCGAAGTCGCACTTGTCCAATTAG
TCGTGGATGGTGTCGGCCTTTTGGTCCGTATGGAGAAAGAATTGATGAAC
AAAGGGGATATCACTTCCTTGATCCCCAACTAAGAATCTTTCTCTCCACA
TGGTCCATTTAGAACCAGATTTAGTCATTTAGTGTATCAAATTTATATCA
TTCTTTCGCACACATTGTCGTATTAATTCCTTTATAATATTTAAATCatg
tacacaatttttttttgtatatttttcaaaCATACCCACGCGTTAACTTT
TAGCCATNTATCatgtacacaattttttttgtatatttttcaaaCATACC
CACGCGTCAACTTTTAGCCATAACCTGAAACCTTATAGAACAGAAATCTT
GTAATAATTAGTTTTCAGTGCTTCGATATCAGCCTTCAGCCCTTTGTTCA
TGCTTCAAAAGAACTTTTGGGAAGAAATATGATATTCTAAATGCCCTTGT
TGAACTCAATTCCTAATGTGCATCGGCCCCAAATTTGAAATGAGTATTTA
TCATAGATTTTTCGTCCTTTTTTTGTCTTTTAATGCTTGGTTTGATAATT
CAATTTGTAAATATAATTGTAAAGTGATCGAATACAAAATCTATTTAATG
TAAGAAAAGAAAAGCACAGGAAAACTAATCTCAATGAAAAAGTCTCACTA
CTTTACCCACACCCTTATGAATCCATACCCTCCTTCTTGCCTCTTCCCTA
ATTTGAGCCCATATGGCGGTTCAAGTTATTTATCGGAGGCATGGCGATCG
CAACAGCTATAGCCAAATGATTGGTTGGTCTGTTCGCCGTCCAACTATAT
ATGTCACCCTATGAATAACCTTTAATtataat
Run BLAST on NCBI

transcript from alignment at sc0000081:307830..313679+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007992 ID=TCONS_00007992|Name=TCONS_00007992|organism=Clytia hemisphaerica|type=transcript|length=5850bp|location=Sequence derived from alignment at sc0000081:307830..313679+ (Clytia hemisphaerica)
TTTAGTTACAATTTTTAGCATAGCATCGTCAGTGTGAGGACAGTTGGTCG TCGAGTCATCTAAAAGAGTATAACAAGGTGGAGTATCAAATAATTGGGTT GGGTCAAAGctattaccttatcggccttaattattagtcggccctaagtt tAGTCatctcgtcaaaatttagtcactaagggccgactcaTAATTAAGAC CGAATAAAAATTAGTGggttaaggaaagcttaattataaacttttagttt ggcccaaatttttagtcggccctaactttagtcacctcgtcaaaatttag tcacttagggtcGACTAAGTTCTGGCCGATTATACAATCTAACATATTGG TGGGTAATTAGTATTATTTGGTCTGTTATTCATGTTTCAGTCTCAAGAAT GTATTTTTCGCTCATCGTATCCTACAGTATATTTCATGCCCTTAGGGTTC GGGGGTCTGACCAAAAAAGATTAAACAGTGAGATTAGTATTtgcagtaca cgtttttttataagaacatctagaATCTTTGAAGAGTTCGGATAtttcga gttttaagccttaaaaatgttcttaagatgttcttatttcaccattttgt gaatatttttgtcatttttctaagaaaccggctgttttagagtcggcaaa gccttaaaatgttcttaacttgctcttaacatttcGGTCACCgtagcctt atgttcttatatagtttgttcttataaaaagcgtgtacgtACTAGAATAG ATACTATTTTCGAAGAAAGTGTGGAAAGGAGTCCTTGTACTGTCACGGAA TTTTTAGAAACCTAAGTAATCGAAGATTCTCTGGACTCAGTTCTTCAGTA TAAAACcatgattttttattgaaatgccACCGCAGCAGACCGATCAAATT AATTGTTAAAATGGCCTTAAAAAGTTATGCTGATAGCTGTAACTTTTGTT AGAATAATgtctatgaatttttgaaacgaattttcagttataatatCCTT AAGCATGCGTTTAGCTCCCTGCAGTGACAATAACCATATGTGACTCTAAT GAATCCTTCAATTTTTCTCTTAGAAGGTTCTGCCAAATAACGAGCCTACC GCCGTTACCAACAACAACGCTAACAACAACGTTATTAACGCCAAGAAGCA ACCTGTCAATCAAAATACATCATCGACAACAACATTAAAAATGGCTGAAT ACCCAGATCTTTCCAAACACAACAACTGGATGTCCAGAGTCATGAACAAA GAATTGTTcgacaaaatgtcaaaattgaaaacaccAAATGGTGTCACTTT TGAACAAATCATTAAAACTGGTATTGCAAACCCAGGGCATCCTTTCATCG TAACCGTGGGTTGCGTTGCCGGTGATGAAGAATCGTATGAGACATTCAAG GAATTTTTCGATCCCGTAATTGAAGGACGCCACAACGGTGAGTCAAAAAA AGCTCATATATAAGATCATGTGAGCTCTGTTCACccgtatatatatatat agtctagaagtataaaaccttcaactactcaaaatggaaacaatatagac aaaaacccacaaaacaaaaagacaatacaaatacaacaaaaatctagaat gaacattcacagaaaatcaatcaggttggagtagaaaaggaaaatatgat gaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtcctcagttttcg acctacacaggatttcggccatttgtgaaaatatcctcctatatgatgga aagatggaaatatatatataatagtTGTAGTGtcttttataaatatttca aatttagtGTTTTTACAGCGGCCGGTAGCACGATGCTAGCGAGCCGGGCT CAAAATCACTAACATATTactttggtggttcgagccagTGTCAAATCTGC AATTTTGAATAAAACTCTATGTCGCTGATCTAAGCATTTAGCTACATGTG TTCAAAATACAAATTTCAGTTACACGAAAGATTTTCTGAAATGTTTACTT ACCCTGATGCTAAAATAACAATATGGATAGAATCACAGTAAAGTTTACTa taatttgaataaatacaCTTGATCTACTCAGCTGTCAGAATCTTTCAAAG ATTCGATGAAAATCCTTAAGATGGTCCTTGAGAGTATTATATAAGCGCTG CTAAGATAAAGTCTATATATCTTcattccaatctatgatttgtagGATAC AAACCCGACGCTAAACACAAGACTGACTTGAACTTTGAAAATCTCAAAGG AGGTGATGATTTGGACCCCAATTTTGTTATTTCAAGCCGTGTCCGTACTG GAAGAAGTATCCGTGGTTTGAACTTGCCACCTGTCTGTAACATTCAAGAA AGACGAGATGTAGAAGAGATTGTCACCAAAGCTTTGGGAGCCCTTGGTGG TGACTTTGCTGGTAAGTGACGTGTTTTATACAAAAACAGTACCTTATTTC TGCTTAAACTATTATTCGCGAatccaaaatctaaaaatttcgcaTGCACT AAatttaccctcttttttatccaaattctttcatttttttaggttttttg aaaaaaaatttgatttaaaatttttctaataTTCGCGAAAACTAATCcgc gcgaaatttaatccacttgaCTTGAGGTAGAGAATGTGTCTCTCTTACGT TACAAAGCTCGTACCCAGTTCCTTAATTCGCTTTTTTATGAGTTTAGTAT GTCAGCCTTTTCTAAAGAAATTCATAGTCGATGGATTTCTTTTCCAGGAA AATACTACCCATTGACTGGTATGTCCGAAGAAGATCAAAACCAACTTATC GAAGACCATTTCTTATTCGATAAACCCGTTTCCCCTTTACTCACTGCTTC TGGTATGGCACGTGACTGGCCCGATGCACGTGGTATCTGGCATAACAAAG ACAAGAACTTCTTAGTGTGGGTCAACGAAGAAGATCATATCCGAGTTATC TCCATGGAGAAGAGTGGAAACATGCGAGAAGTATTCAATCGATTCTGTAA AGGTTTAGCTATGTTTGAAGAACAAATGAAAGGAAATGGTCACTCCTTCA TGTGGAATGAACATTTGGGTTTCGTTTTGACTTGTCCATCTAATCTTGGT AAGTTTGACCACACTTTGGTCTATCCCatctgacacacaacgttgtttca aagtttatctaacgttcacaacgtccatatatcgttaaatgaacgttgaa aaacgttgtgtgcctgctGGGATTTCCCTGACCCTCAAATAAGCTATACA CATTTTCTTTTGTAAGAACcaatacagttgatgctctctagtTTGACATT CTACTATTCCATATCCAGCTGgcgcacaacgttgtttcaacgttcattta acgttatatggactttgtgaacattaaataaacgttgaaacaactgtgcc agctgggtatgcTTTATTTCTCAATAATGTTGAAAGTCTCCGTCAACATA ATCTCTCATAAGTGATGTTCTGCCATTCCATTCTCTCtagttttgaattt gtttttagaCTTCGGTCAAAATTGAGTGCGTTCTATTCTTATGAAAACCT TTAGTAAAGCTATTAAAATACCCTCAAATTTTTTTCGCGACTCTCTAAGT AATAAAGtatattcttttcttttcaggAACTGGTATCAGAGCTGGAGTGC ACGTCAAACTCCCACTTTTGGCAAAACATTCCGAATTCGACAACATTCTC AAGAAACTCAGACTCCAAAAGAGAGGTAAGTAGCTTTGTTAAAGCCATAG CTGGAACAACCgatagttaaattccgctgtctCTTTCCAAATAGCATACA AAGCTTATTGTTTAAAAACAAACCTACAGTATCTATTCAAAAATTCCTTA AGAGTAGAAATCTAATTGACGAACACTGCTCCAAGCTCCAAGCTCCTCCA CTCCTCCATTGAACCCATGTTCTTGGACTAAGGAACACGTCAAAATGACT CATTTTCTGCGAATAGAGGATAATGTACCCATACCATACTATAATGAAGT ATAGTACACTCTAATTCTACACATGTCAAATTTATAACGCATTCTAATCA AAAATTTACATATCTTTTACAGGAACCGGAGGTGTTGATACTGCAGCTGA AGGCGGTACTTTCGATATCTCTAATGCTGATCGTTTGGGATTTTCCGAAG TCGCACTTGTCCAATTAGTCGTGGATGGTGTCGGCCTTTTGGTCCGTATG GAGAAAGAATTGATGAACAAAGGGGATATCACTTCCTTGATCCCCAACTA AGAATCTTTCTCTCCACATGGTCCATTTAGAACCAGATTTAGTCATTTAG TGTATCAAATTTATATCATTCTTTCGCACACATTGTCGTATTAATTCCTT TATAATATTTAAATCatgtacacaatttttttttgtatatttttcaaaCA TACCCACGCGTTAACTTTTAGCCATNTATCatgtacacaattttttttgt atatttttcaaaCATACCCACGCGTCAACTTTTAGCCATAACCTGAAACC TTATAGAACAGAAATCTTGTAATAATTAGTTTTCAGTGCTTCGATATCAG CCTTCAGCCCTTTGTTCATGCTTCAAAAGAACTTTTGGGAAGAAATATGA TATTCTAAATGCCCTTGTTGAACTCAATTCCTAATGTGCATCGGCCCCAA ATTTGAAATGAGTATTTATCATAGATTTTTCGTCCTTTTTTTGTCTTTTA ATGCTTGGTTTGATAATTCAATTTGTAAATATAATTGTAAAGTGATCGAA TACAAAATCTATTTAATGTAAGAAAAGAAAAGCACAGGAAAACTAATCTC AATGAAAAAGTCTCACTACTTTACCCACACCCTTATGAATCCATACCCTC CTTCTTGCCTCTTCCCTAATTTGAGCCCATATGGCGGTTCAAGTTATTTA TCGGAGGCATGGCGATCGCAACAGCTATAGCCAAATGATTGGTTGGTCTG TTCGCCGTCCAACTATATATGTCACCCTATGAATAACCTTTAATtataat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004506XLOC_004506Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007992-exon-sc0000081-1491911889:307830..307906TCONS_00007992-exon-sc0000081-1491911889:307830..307906Clytia hemisphaericaexon
TCONS_00007992-exon-sc0000081-1510915933:307830..307906TCONS_00007992-exon-sc0000081-1510915933:307830..307906Clytia hemisphaericaexon
TCONS_00007992-exon-sc0000081-1575043694:307830..307906TCONS_00007992-exon-sc0000081-1575043694:307830..307906Clytia hemisphaericaexon
TCONS_00007992-exon-sc0000081-1491911889:308906..309266TCONS_00007992-exon-sc0000081-1491911889:308906..309266Clytia hemisphaericaexon
TCONS_00007992-exon-sc0000081-1510915933:308906..309266TCONS_00007992-exon-sc0000081-1510915933:308906..309266Clytia hemisphaericaexon
TCONS_00007992-exon-sc0000081-1575043694:308906..309266TCONS_00007992-exon-sc0000081-1575043694:308906..309266Clytia hemisphaericaexon
TCONS_00007992-exon-sc0000081-1491911889:310875..311090TCONS_00007992-exon-sc0000081-1491911889:310875..311090Clytia hemisphaericaexon
TCONS_00007992-exon-sc0000081-1510915933:310875..311090TCONS_00007992-exon-sc0000081-1510915933:310875..311090Clytia hemisphaericaexon
TCONS_00007992-exon-sc0000081-1575043694:310875..311090TCONS_00007992-exon-sc0000081-1575043694:310875..311090Clytia hemisphaericaexon
TCONS_00007992-exon-sc0000081-1491911889:311427..311777TCONS_00007992-exon-sc0000081-1491911889:311427..311777Clytia hemisphaericaexon
TCONS_00007992-exon-sc0000081-1510915933:311427..311777TCONS_00007992-exon-sc0000081-1510915933:311427..311777Clytia hemisphaericaexon
TCONS_00007992-exon-sc0000081-1575043694:311427..311777TCONS_00007992-exon-sc0000081-1575043694:311427..311777Clytia hemisphaericaexon
TCONS_00007992-exon-sc0000081-1491911889:312306..312404TCONS_00007992-exon-sc0000081-1491911889:312306..312404Clytia hemisphaericaexon
TCONS_00007992-exon-sc0000081-1510915933:312306..312404TCONS_00007992-exon-sc0000081-1510915933:312306..312404Clytia hemisphaericaexon
TCONS_00007992-exon-sc0000081-1575043694:312306..312404TCONS_00007992-exon-sc0000081-1575043694:312306..312404Clytia hemisphaericaexon
TCONS_00007992-exon-sc0000081-1491911889:312752..313679TCONS_00007992-exon-sc0000081-1491911889:312752..313679Clytia hemisphaericaexon
TCONS_00007992-exon-sc0000081-1510915933:312752..313679TCONS_00007992-exon-sc0000081-1510915933:312752..313679Clytia hemisphaericaexon
TCONS_00007992-exon-sc0000081-1575043694:312752..313679TCONS_00007992-exon-sc0000081-1575043694:312752..313679Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000081supercontigsc0000081:307830..313679 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 1454.44 1290.72 450.8 470.266 433.813 319.948 293.318 404.075 130.256 138.54 0 0 9.89869 6.09428 241.04 163.254 23.1073 18.7171 17.8661 27.8127 36.1495 35.9505 0 0 0 0
Blast
BLAST of TCONS_00007992 vs. Swiss-Prot (Human)
Match: KCRM (Creatine kinase M-type OS=Homo sapiens GN=CKM PE=1 SV=2)

HSP 1 Score: 513.072 bits (1320), Expect = 8.949e-177
Identity = 252/360 (70.00%), Postives = 293/360 (81.39%), Query Frame = 3
Query:  198 EYPDLSKHNNWMSRVMNKELFDKMSKLKTPNGVTFEQIIKTGIANPGHPFIVTVGCVAGDEESYETFKEFFDPVIEGRHNGYKPDAKHKTDLNFENLKGGDDLDPNFVISSRVRTGRSIRGLNLPPVCNIQERRDVEEIVTKALGALGGDFAGKYYPLTGMSEEDQNQLIEDHFLFDKPVSPLLTASGMARDWPDARGIWHNKDKNFLVWVNEEDHIRVISMEKSGNMREVFNRFCKGLAMFEEQMKGNGHSFMWNEHLGFVLTCPSNLGTGIRAGVHVKLPLLAKHSEFDNILKKLRLQKRGTGGVDTAAEGGTFDISNADRLGFSEXXXXXXXXXXXXXXXRMEKELMNKGDITSLIP 1277
            EYPDLSKHNN M++V+  EL+ K+   +TP+G T + +I+TG+ NPGHPFI+TVGCVAGDEESYE FKE FDP+I  RH GYKP  KHKTDLN ENLKGGDDLDPN+V+SSRVRTGRSI+G  LPP C+  ERR VE++  +AL +L G+F GKYYPL  M+E++Q QLI+DHFLFDKPVSPLL ASGMARDWPDARGIWHN +K+FLVWVNEEDH+RVISMEK GNM+EVF RFC GL   EE  K  GH FMWN+HLG+VLTCPSNLGTG+R GVHVKL  L+KH +F+ IL +LRLQKRGTGGVDTAA G  FD+SNADRLG SEV  VQLVVDGV L+V MEK+L     I  +IP
Sbjct:   19 EYPDLSKHNNHMAKVLTLELYKKLRDKETPSGFTVDDVIQTGVDNPGHPFIMTVGCVAGDEESYEVFKELFDPIISDRHGGYKPTDKHKTDLNHENLKGGDDLDPNYVLSSRVRTGRSIKGYTLPPHCSRGERRAVEKLSVEALNSLTGEFKGKYYPLKSMTEKEQQQLIDDHFLFDKPVSPLLLASGMARDWPDARGIWHNDNKSFLVWVNEEDHLRVISMEKGGNMKEVFRRFCVGLQKIEEIFKKAGHPFMWNQHLGYVLTCPSNLGTGLRGGVHVKLAHLSKHPKFEEILTRLRLQKRGTGGVDTAAVGSVFDVSNADRLGSSEVEQVQLVVDGVKLMVEMEKKLEKGQSIDDMIP 378          
The following BLAST results are available for this feature:
BLAST of TCONS_00007992 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KCRM8.949e-17770.00Creatine kinase M-type OS=Homo sapiens GN=CKM PE=1... [more]
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