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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007988 ID=TCONS_00007988|Name=TCONS_00007988|organism=Clytia hemisphaerica|type=transcript|length=1857bpRun BLAST on NCBI transcript from alignment at sc0000081:250363..279621+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00007988 ID=TCONS_00007988|Name=TCONS_00007988|organism=Clytia hemisphaerica|type=transcript|length=29259bp|location=Sequence derived from alignment at sc0000081:250363..279621+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00007988 vs. Swiss-Prot (Human)
Match: WDR61 (WD repeat-containing protein 61 OS=Homo sapiens GN=WDR61 PE=1 SV=1) HSP 1 Score: 398.667 bits (1023), Expect = 4.728e-134 Identity = 203/303 (67.00%), Postives = 253/303 (83.50%), Query Frame = 2
Query: 161 DMYAVSNKLEDAHEDGIWAVAWRXXXXXXXXXXXXGGLDDVLKCWKWNDGAIVPQASYEGHQLGIVSTDINKTGNLATSSSLDSHIRIWDLDVGKQIKSIDLGPVDSWTVTFSPDSKYIATGSHTGKVNLIGVDSGVKEETLDTRSKFTMSIAYSPDGKYVACGAVDGIVNIFDMTTKKLLHTLEGHAMTIRSLTFSPDSQILLTGSDDGHLKMYDVQHANLAGTLSGHGSSVASVAFSPDNTHFVSASSDKSVKVWDAGSRQCLHTFYEHKDQVWGVAYNNTGSKIVSVGEDKAIVVYEVPV 1069
+ Y + K E AH+D IW+VAW TN+ +N++ ++TG LDD++K WKW D + Q S EGHQLG+VS DI+ T +A SSSLD+HIR+WDL+ GKQIKSID GPVD+WT+ FSPDS+Y+ATG+H GKVN+ GV+SG KE +LDTR KF +SIAYSPDGKY+A GA+DGI+NIFD+ T KLLHTLEGHAM IRSLTFSPDSQ+L+T SDDG++K+YDVQHANLAGTLSGH S V +VAF PD+THFVS+SSDKSVKVWD G+R C+HTF++H+DQVWGV YN GSKIVSVG+D+ I +Y+ P+
Sbjct: 3 NQYGILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCPI 305 The following BLAST results are available for this feature:
BLAST of TCONS_00007988 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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