TCONS_00007984 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007984
Unique NameTCONS_00007984
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length874

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007984 ID=TCONS_00007984|Name=TCONS_00007984|organism=Clytia hemisphaerica|type=transcript|length=874bp
CCACCTTCTTTCAAAACATGGCTTTACCAATGCGGAGTATACATTTGTGT
CATGTTGGTGGAAAAATGTGTCATCTTAGCTTTCTTTCAATTGAAATTCT
GGGTGAAGGTGAAAGAAATCATCTTGTTACCGTTTCATGGACATCCGAAA
ATTGAAGTGGTAATTGTCGTCTTGATTGTTCCATTTATTATGAACGCACT
GATGTTTTGGGCTGTTGATAATTTCTTGATGAGAAAAAGTCGTAAATTGT
TATCCATGTCACACGACGGTTCCTCAAAACAAGTTCAATATGTCAACCAT
AAAAATAACTATATGTCGGACGACGAAGTTCATATGCATTTGATGGCAAG
TGAAGCTCAAGATTCAACTGTTATCGATGAGAGGCTTGGATCGGGTTCGG
AATCGGAATTGTTGTTCAGGAGAACTGGTTCTGAATCCAGTTACAAGTAA
ATACCCGATTTTTCTTTGCTATTCAATTCGGGTTTCTTTGGTTAAGTAAT
GTTGGCTGGCTTATCATGAGAAATAATCCGATCTGATTACTTAATATCCT
AGCAAAAACAGTCGTATTGAAATCCCAAAAATTGGAGTGACGCTCAAAAG
CAATAGTTGAATTGAAGATGTCCCAATTTGATAGGGCTATTTTTGAAGAT
TGGCAGACCGAAAATCCACCTCGTGTAAGCCACCtataaatagagccttt
ggtcCACTTTAACTGATGATAGGGGACCTTTAGCATCTAGGAAGGCGACT
TGAATAAGGACGTGATgtaaatcttaaaatcaaatgGCAAATTTTATCCG
ATTTTACATAGATTTAATATCACAAATTTGAATTTAGtcaagtttttgta
aaaaatgacgttACAATTTTCTAG
Run BLAST on NCBI

protein sequence of TCONS_00007984-protein

>TCONS_00007984-protein ID=TCONS_00007984-protein|Name=TCONS_00007984-protein|organism=Clytia hemisphaerica|type=polypeptide|length=149bp
PPSFKTWLYQCGVYICVMLVEKCVILAFFQLKFWVKVKEIILLPFHGHPK
IEVVIVVLIVPFIMNALMFWAVDNFLMRKSRKLLSMSHDGSSKQVQYVNH
KNNYMSDDEVHMHLMASEAQDSTVIDERLGSGSESELLFRRTGSESSYK
Run BLAST on NCBI

transcript from alignment at sc0000081:52516..53908+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007984 ID=TCONS_00007984|Name=TCONS_00007984|organism=Clytia hemisphaerica|type=transcript|length=1393bp|location=Sequence derived from alignment at sc0000081:52516..53908+ (Clytia hemisphaerica)
CCACCTTCTTTCAAAACATGGCTTTACCAATGCGGAGTATACATTTGTGT
CATGTTGGTGGAAAAATGTGTCATCTTAGCTTTCTTTCAATTGAAATTCT
GGGTGAAGGTGAAAGAAATCATCTTGTTACCGTTTCATGGACATCCGAAA
ATTGAAGTGGTAATTGTCGTCTTGATTGTTCCATTTATTATGAACGTAAG
TATCTGAtcatatttttgtaaaacctttaTCTACTTTTGAAATTCTAAAG
CGAGCCCCTCCTTGAGTTAGAGGGATTGATTGAATCTGCTTGAAGAATTT
TGGAAAGTTTGAGTGAAAGTTTGAGACTGACAATGCCGGTAGTGAGCGCT
GTGGTATAGAGGtcagtgaatgaaccttcgcccgggtcaacccatgccat
gtgaggggaattgggtagtcagtccacgGTGCTGACGGGGCTCATTGAAA
GCTTCTATatttgcgaaaataggccttataaagcctcctgcaactcaacc
aaatagaataAAGGATAGCAAATTCTGATGACATTTAATGTTGACAATac
ataaaaacatattttatcaTACTTACGAAATATCTTCACTAGAGTTTCTC
TTTTCGCAAAAGAGTAAACTGCGTTCATTATCTATAATCATCATAATTAA
CATATGATGATTATAGATATAGTGTTTTCAAgtctaatttaaatttttta
caaatttattCCAGGCACTGATGTTTTGGGCTGTTGATAATTTCTTGATG
AGAAAAAGTCGTAAATTGTTATCCATGTCACACGACGGTTCCTCAAAACA
AGTTCAATATGTCAACCATAAAAATAACTATATGTCGGACGACGAAGTTC
ATATGCATTTGATGGCAAGTGAAGCTCAAGATTCAACTGTTATCGATGAG
AGGCTTGGATCGGGTTCGGAATCGGAATTGTTGTTCAGGAGAACTGGTTC
TGAATCCAGTTACAAGTAAATACCCGATTTTTCTTTGCTATTCAATTCGG
GTTTCTTTGGTTAAGTAATGTTGGCTGGCTTATCATGAGAAATAATCCGA
TCTGATTACTTAATATCCTAGCAAAAACAGTCGTATTGAAATCCCAAAAA
TTGGAGTGACGCTCAAAAGCAATAGTTGAATTGAAGATGTCCCAATTTGA
TAGGGCTATTTTTGAAGATTGGCAGACCGAAAATCCACCTCGTGTAAGCC
ACCtataaatagagcctttggtcCACTTTAACTGATGATAGGGGACCTTT
AGCATCTAGGAAGGCGACTTGAATAAGGACGTGATgtaaatcttaaaatc
aaatgGCAAATTTTATCCGATTTTACATAGATTTAATATCACAAATTTGA
ATTTAGtcaagtttttgtaaaaaatgacgttACAATTTTCTAG

Coding sequence (CDS) from alignment at sc0000081:52516..53908+

>TCONS_00007984 ID=TCONS_00007984|Name=TCONS_00007984|organism=Clytia hemisphaerica|type=CDS|length=900bp|location=Sequence derived from alignment at sc0000081:52516..53908+ (Clytia hemisphaerica)
CCACCTTCTTTCAAAACATGGCTTTACCAATGCGGAGTATACATTTGTGT
CATGTTGGTGGAAAAATGTGTCATCTTAGCTTTCTTTCAATTGAAATTCT
GGGTGAAGGTGAAAGAAATCATCTTGTTACCGTTTCATGGACATCCGAAA
ATTGAAGTGGTAATTGTCGTCTTGATTGTTCCATTTATTATGAACGCACT
GATGTTTTGGGCTGTTGATAATTTCTTGATGAGAAAAAGTCGTAAATTGT
TATCCATGTCACACGACGGTTCCTCAAAACAAGTTCAATATGTCAACCAT
AAAAATAACTATATGTCGGACGACGAAGTTCATATGCATTTGATGGCAAG
TGAAGCTCAAGATTCAACTGTTATCGATGAGAGGCTTGGATCGGGTTCGG
AATCGGAATTGTTGTTCAGGAGAACTGGTTCTGAATCCAGTTACAAGTAA
CCACCTTCTTTCAAAACATGGCTTTACCAATGCGGAGTATACATTTGTGT
CATGTTGGTGGAAAAATGTGTCATCTTAGCTTTCTTTCAATTGAAATTCT
GGGTGAAGGTGAAAGAAATCATCTTGTTACCGTTTCATGGACATCCGAAA
ATTGAAGTGGTAATTGTCGTCTTGATTGTTCCATTTATTATGAACGCACT
GATGTTTTGGGCTGTTGATAATTTCTTGATGAGAAAAAGTCGTAAATTGT
TATCCATGTCACACGACGGTTCCTCAAAACAAGTTCAATATGTCAACCAT
AAAAATAACTATATGTCGGACGACGAAGTTCATATGCATTTGATGGCAAG
TGAAGCTCAAGATTCAACTGTTATCGATGAGAGGCTTGGATCGGGTTCGG
AATCGGAATTGTTGTTCAGGAGAACTGGTTCTGAATCCAGTTACAAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004504XLOC_004504Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007984-proteinTCONS_00007984-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007984-exon-sc0000081-1491911889:52516..52710TCONS_00007984-exon-sc0000081-1491911889:52516..52710Clytia hemisphaericaexon
TCONS_00007984-exon-sc0000081-1510915933:52516..52710TCONS_00007984-exon-sc0000081-1510915933:52516..52710Clytia hemisphaericaexon
TCONS_00007984-exon-sc0000081-1575043694:52516..52710TCONS_00007984-exon-sc0000081-1575043694:52516..52710Clytia hemisphaericaexon
TCONS_00007984-exon-sc0000081-1491911889:53230..53908TCONS_00007984-exon-sc0000081-1491911889:53230..53908Clytia hemisphaericaexon
TCONS_00007984-exon-sc0000081-1510915933:53230..53908TCONS_00007984-exon-sc0000081-1510915933:53230..53908Clytia hemisphaericaexon
TCONS_00007984-exon-sc0000081-1575043694:53230..53908TCONS_00007984-exon-sc0000081-1575043694:53230..53908Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000081supercontigsc0000081:52516..53908 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.5087	6.13891	3.56393	2.48209	12.6624	9.09636	8.91668	9.43931	8.9914	10.2463	7.6752	8.17208	12.1346	8.54869	5.9376	7.86742	6.60819	7.92257	10.7753	16.3199	7.58252	6.11383	10.2766	10.6776	9.79162	9.61067	9.50431	7.65099	10.5994	11.9453
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR022127STIMATE/YPL162C
Blast
[Close]
BLAST of TCONS_00007984 vs. Swiss-Prot (Human)
Match: STIMA (Store-operated calcium entry regulator STIMATE OS=Homo sapiens GN=TMEM110 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 3.231e-16
Identity = 45/135 (33.33%), Postives = 75/135 (55.56%), Query Frame = 1 
Query:    1 PPSFKTWLYQCGVYICVMLVEKCVILAFFQLKFWVKVKEIILLPFHGHPKIEVVIVVLIVPFIMNALMFWAVDNFLMRKSRKLLSMSHDGSSK------QVQYVNHKNNYMSDDEVHMHLMASEAQDSTVIDERL 387
            P     W+ QC +YI +M+ EK V+     +  W KV   +L P   +P +++ IV+LIVPF +NALMFW VDNFLMRK +    +   G+++      +V+Y    ++  S+ E+ +   A +  + + ++E L
Sbjct:  145 PLQCGAWVGQCALYIVIMIFEKSVVFIVLLILQWKKVA--LLNPIE-NPDLKLAIVMLIVPFFVNALMFWVVDNFLMRKGKTKAKLEERGANQDSRNGSKVRYRRAASHEESESEILIS--ADDEMEESDVEEDL 274
The following BLAST results are available for this feature:
BLAST of TCONS_00007984 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
STIMA3.231e-1633.33Store-operated calcium entry regulator STIMATE OS=... [more]
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