TCONS_00007983 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007983
Unique NameTCONS_00007983
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length501

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007983 ID=TCONS_00007983|Name=TCONS_00007983|organism=Clytia hemisphaerica|type=transcript|length=501bp
CACAATTTGAGCTGATAAAATCTTCAGTACTTTGGCAGCCACAAATTTCA
GGACTTTAGGAAATTTATGATTGTTTTTTAGAGAATATATTAGATAAGAC
ATGATGTTAACAAATAAAAGTACCTCAACAGTTTTGGTGAATAATGATAA
TGGTCACTGCAGCTTGAACAACAATTTTGGGATCACAGTCCAAGCAATTC
TTGCTTTCACTGCATTTGCTATTCTTATTTTGAAGCGTTGTCACGAGcct
aaagaagaaagaagatctGTAGCAATTTGgttttgtgACACTTCGAAGCA
GGCTATCGGGGCAATGTTGATCCATTTTGCAAACGTTTTCCTTGCTGAAT
TGAGTCATGAAAAGGACCCTTGTACATGGTACTTCATCAATTATCTCCTG
GACACAACCATCGGTCTGTTGGTCATTTGGTTAGCTTTACGCTTACTTCA
TGTCATTGCTTCCAAGAAAGGATGGATCAGGCTTCGAATGGGGGAGTATG
G
Run BLAST on NCBI

protein sequence of TCONS_00007983-protein

>TCONS_00007983-protein ID=TCONS_00007983-protein|Name=TCONS_00007983-protein|organism=Clytia hemisphaerica|type=polypeptide|length=133bp
MMLTNKSTSTVLVNNDNGHCSLNNNFGITVQAILAFTAFAILILKRCHEP
KEERRSVAIWFCDTSKQAIGAMLIHFANVFLAELSHEKDPCTWYFINYLL
DTTIGLLVIWLALRLLHVIASKKGWIRLRMGEY
Run BLAST on NCBI

transcript from alignment at sc0000081:50428..52034+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007983 ID=TCONS_00007983|Name=TCONS_00007983|organism=Clytia hemisphaerica|type=transcript|length=1607bp|location=Sequence derived from alignment at sc0000081:50428..52034+ (Clytia hemisphaerica)
CACAATTTGAGCTGATAAAATCTTCAGTACTTTGGCAGCCACAAATTTCA
GGACTTTAGGAAATTTATGATTGTTTTTTAGAGAATATATTAGATAAGAC
ATGATGTTAACAAATAAAAGTACCTCAACAGTTTTGGTGAATAATGATAA
TGGTCACTGCAGCTTGAACAACAATTTTGGGATCACAGTCCAAGCAATTC
TTGCTTTCACTGCATTTGCTATTCTTATTTGTGAGTTACAATATTATATA
TGTGAGCTTGATATATTGAGAAACTTTGTTTTGCCAGACTTATGTTTCAT
GACTTCTTTTGAAGAGTGTTTCTcgtgttttgaataatttgattaTAACT
TTGATTTAGCATTTATTGAACACCTTGTCtataaaatttttaatattttc
atttcactTTAGTGAAGCGTTGTCACGAGcctaaagaagaaagaagatct
GTAGCAATTTGGTAAGAATGGAGTAATCTTATAAGATTATAAATAATGAA
TACTGTAGAGATGAGCAATTCTCTTTAAAGTATGAAAATGTAATAATAGG
GTGTATGatgaaataacttttttttcaaaattgaacttTGGATATAACTT
TTTCTGCTAATTTAATTCATTTTAAGATTTTCTGCAAaagaattaattca
aaatcttcaaaattgaccGTTTGCACCAGGGTTTTGTAAAATtgatattt
tcgaaaatatgtgaaaattgctcaaaagtTAGGATTTTCAGTGCTTGAAG
CATATTGGATGAATTTATAGCACTCTAAAGTGCTTTtaaagtgagaaaaa
aaaatgtttcattacATGTATAATAAACTATTCCAATGACAAAATTCTCc
caaaatttgaggtttttaGGGCTTTTTCAACAAACTACCCCCAAAATAGT
AATAAGATATATTGTGAATCAATTTATCATCGAAGCATTTTAGTAGTTCA
AGCAATTCTCAAATTTGCCTGTATTGTTATTTTCCTGTTTTGACAGTAAA
AGGATATTCCTACTCtcttttttttaggttttgtgACACTTCGAAGCAGG
CTATCGGGGCAATGTTGATCCATTTTGCAAACGTTTTCCTTGCTGAATTG
AGTCATGAAAAGGACCCTTGTACATGGTATGAAAACTTAAATTGCTTATT
ATATGGCAACCAACCATTTGAACcatttatttctgacgtcagaaattata
acaatttttgatctcttttcgcttgtatttttcactttatttcgctcttt
ttcctggaaaaagtGCTAAAAATCAATTGAAGCTGAAGagaacggttaac
aaatacaataatgaccggttttttcagGCTGCACTGGAAATATTGTCCTC
GGTcgacgcaacaacctcgcaagctcggtcgttacttgacctcgggaaat
atttctcagtacagccctcactaaccggtcattattgtattagtgtACAA
TGCCCTACTATTCTACTATTATTACAATTTTCAGGTACTTCATCAATTAT
CTCCTGGACACAACCATCGGTCTGTTGGTCATTTGGTTAGCTTTACGCTT
ACTTCATGTCATTGCTTCCAAGAAAGGATGGATCAGGCTTCGAATGGGGG
AGTATGG

Coding sequence (CDS) from alignment at sc0000081:50428..52034+

>TCONS_00007983 ID=TCONS_00007983|Name=TCONS_00007983|organism=Clytia hemisphaerica|type=CDS|length=1596bp|location=Sequence derived from alignment at sc0000081:50428..52034+ (Clytia hemisphaerica)
ATGATGTTAACAAATAAAAGTACCTCAACAGTTTTGGTGAATAATGATAA
TGGTCACTGCAGCTTGAACAACAATTTTGGGATCACAGTCCAAGCAATTC
TTGCTTTCACTGCATTTGCTATTCTTATTTTGAAGCGTTGTCACGAGcct
aaagaagaaagaagatctGTAGCAATTTGgttttgtgACACTTCGAAGCA
GGCTATCGGGGCAATGTTGATCCATTTTGCAAACGTTTTCCTTGCTGAAT
TGAGTCATGAAAAGGACCCTTGTACATGGTACTTCATCAATTATCTCCTG
GACACAACCATCGGTCTGTTGGTCATTTGGTTAGCTTTACGCTTACTTCA
TGTCATTGCTTCCAAGAAAGGATGGATCAGGCTTCGAATGGGGGAGTATA
TGATGTTAACAAATAAAAGTACCTCAACAGTTTTGGTGAATAATGATAAT
GGTCACTGCAGCTTGAACAACAATTTTGGGATCACAGTCCAAGCAATTCT
TGCTTTCACTGCATTTGCTATTCTTATTTTGAAGCGTTGTCACGAGccta
aagaagaaagaagatctGTAGCAATTTGgttttgtgACACTTCGAAGCAG
GCTATCGGGGCAATGTTGATCCATTTTGCAAACGTTTTCCTTGCTGAATT
GAGTCATGAAAAGGACCCTTGTACATGGTACTTCATCAATTATCTCCTGG
ACACAACCATCGGTCTGTTGGTCATTTGGTTAGCTTTACGCTTACTTCAT
GTCATTGCTTCCAAGAAAGGATGGATCAGGCTTCGAATGGGGGAGTATAT
GATGTTAACAAATAAAAGTACCTCAACAGTTTTGGTGAATAATGATAATG
GTCACTGCAGCTTGAACAACAATTTTGGGATCACAGTCCAAGCAATTCTT
GCTTTCACTGCATTTGCTATTCTTATTTTGAAGCGTTGTCACGAGcctaa
agaagaaagaagatctGTAGCAATTTGgttttgtgACACTTCGAAGCAGG
CTATCGGGGCAATGTTGATCCATTTTGCAAACGTTTTCCTTGCTGAATTG
AGTCATGAAAAGGACCCTTGTACATGGTACTTCATCAATTATCTCCTGGA
CACAACCATCGGTCTGTTGGTCATTTGGTTAGCTTTACGCTTACTTCATG
TCATTGCTTCCAAGAAAGGATGGATCAGGCTTCGAATGGGGGAGTATATG
ATGTTAACAAATAAAAGTACCTCAACAGTTTTGGTGAATAATGATAATGG
TCACTGCAGCTTGAACAACAATTTTGGGATCACAGTCCAAGCAATTCTTG
CTTTCACTGCATTTGCTATTCTTATTTTGAAGCGTTGTCACGAGcctaaa
gaagaaagaagatctGTAGCAATTTGgttttgtgACACTTCGAAGCAGGC
TATCGGGGCAATGTTGATCCATTTTGCAAACGTTTTCCTTGCTGAATTGA
GTCATGAAAAGGACCCTTGTACATGGTACTTCATCAATTATCTCCTGGAC
ACAACCATCGGTCTGTTGGTCATTTGGTTAGCTTTACGCTTACTTCATGT
CATTGCTTCCAAGAAAGGATGGATCAGGCTTCGAATGGGGGAGTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004503XLOC_004503Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007983-exon-sc0000081-1491911889:50428..50657TCONS_00007983-exon-sc0000081-1491911889:50428..50657Clytia hemisphaericaexon
TCONS_00007983-exon-sc0000081-1510915933:50428..50657TCONS_00007983-exon-sc0000081-1510915933:50428..50657Clytia hemisphaericaexon
TCONS_00007983-exon-sc0000081-1575043694:50428..50657TCONS_00007983-exon-sc0000081-1575043694:50428..50657Clytia hemisphaericaexon
TCONS_00007983-exon-sc0000081-1491911889:50840..50888TCONS_00007983-exon-sc0000081-1491911889:50840..50888Clytia hemisphaericaexon
TCONS_00007983-exon-sc0000081-1510915933:50840..50888TCONS_00007983-exon-sc0000081-1510915933:50840..50888Clytia hemisphaericaexon
TCONS_00007983-exon-sc0000081-1575043694:50840..50888TCONS_00007983-exon-sc0000081-1575043694:50840..50888Clytia hemisphaericaexon
TCONS_00007983-exon-sc0000081-1491911889:51455..51553TCONS_00007983-exon-sc0000081-1491911889:51455..51553Clytia hemisphaericaexon
TCONS_00007983-exon-sc0000081-1510915933:51455..51553TCONS_00007983-exon-sc0000081-1510915933:51455..51553Clytia hemisphaericaexon
TCONS_00007983-exon-sc0000081-1575043694:51455..51553TCONS_00007983-exon-sc0000081-1575043694:51455..51553Clytia hemisphaericaexon
TCONS_00007983-exon-sc0000081-1491911889:51912..52034TCONS_00007983-exon-sc0000081-1491911889:51912..52034Clytia hemisphaericaexon
TCONS_00007983-exon-sc0000081-1510915933:51912..52034TCONS_00007983-exon-sc0000081-1510915933:51912..52034Clytia hemisphaericaexon
TCONS_00007983-exon-sc0000081-1575043694:51912..52034TCONS_00007983-exon-sc0000081-1575043694:51912..52034Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007983-proteinTCONS_00007983-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000081supercontigsc0000081:50428..52034 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.23393	9.71542	4.95243	2.288	19.0064	15.6665	11.2469	12.869	13.2077	14.838	11.694	12.8659	17.2115	12.5036	10.6936	11.624	11.8572	13.1816	13.6906	23.6517	10.5725	11.1733	16.0205	16.4647	12.1317	15.6005	12.495	9.24557	14.6991	13.3274
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR022127STIMATE/YPL162C
Blast
[Close]
BLAST of TCONS_00007983 vs. Swiss-Prot (Human)
Match: STIMA (Store-operated calcium entry regulator STIMATE OS=Homo sapiens GN=TMEM110 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 2.272e-30
Identity = 63/124 (50.81%), Postives = 87/124 (70.16%), Query Frame = 2 
Query:  137 VNNDNGHC---SLNNNFGITVQXXXXXXXXXXXXXKRCHEPKEERRSVAIWFCDTSKQAIGAMLIHFANVFLAELSHEKDPCTWYFINYLLDTTIGLLVIWLALRLLHVIASKKGWIRLRMGEY 499
            V +  G C   +L ++FGI +Q +L   AF+ L+LKR  EPK ERR   IWF DTSKQAIG + IHFANV+LA+L+ E+DPC+ Y IN+LLD T+G+L+I++ +R + V+   + W  LR GEY
Sbjct:   20 VASGAGRCESGALMHSFGIFLQGLLGVVAFSTLMLKRFREPKHERRPWRIWFLDTSKQAIGMLFIHFANVYLADLT-EEDPCSLYLINFLLDATVGMLLIYVGVRAVSVLVEWQQWESLRFGEY 142
The following BLAST results are available for this feature:
BLAST of TCONS_00007983 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
STIMA2.272e-3050.81Store-operated calcium entry regulator STIMATE OS=... [more]
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