TCONS_00007978 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007978
Unique NameTCONS_00007978
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length596

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007978 ID=TCONS_00007978|Name=TCONS_00007978|organism=Clytia hemisphaerica|type=transcript|length=596bp
GAGTAAATGACTTCCAGTACGTGCAGTCCTGAGGAGTAtgttttcaatat
aaaaaagcaaTGTAAGGGTCTAAATGTGTGAAGATGAGTGATAAGTACaa
aagggtgtaaaaagtgagcTAAACATAGTGCCTACCTAATAGGAATGATA
TTGTCTTTGAAGGGATGTGGCCATTATTGACAATcagagttgcttataaa
aatgatGTGTATATGAATATCTTAAGTTGAAGCTAGAGTCACTGTTCAAA
ATACCAATCTTTTTGTGCCAGTGCTAGAGCATTCATAGAACAAACAAATC
TTCATTCCTATTCACTGATAGGCCTGGTCAAATTGCCAAAAGCCAGATTA
ATCGGCCACCTGAATGAAAACAATATCTGAGATAAGAACCATTtacattt
caattgttttttgaaGTTGATGGGTTAGTTGGGATTTAAATGATCAAAGG
TTAAATTACTTCCAAAAAGTAGATGTGTTGATATATCGAGGTATACTTTC
AGTGTATGCTTGAAATGTGCACtaattttattttgcttttagTCATTAAA
CCCATACTTCAATTCTAGCTGCTCTAGTATTCAGTGTTTCCTGAAG
Run BLAST on NCBI

transcript from alignment at sc0000080:605777..606372

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007978 ID=TCONS_00007978|Name=TCONS_00007978|organism=Clytia hemisphaerica|type=transcript|length=596bp|location=Sequence derived from alignment at sc0000080:605777..606372 (Clytia hemisphaerica)
CTTCAGGAAACACTGAATACTAGAGCAGCTAGAATTGAAGTATGGGTTTA
ATGActaaaagcaaaataaaattaGTGCACATTTCAAGCATACACTGAAA
GTATACCTCGATATATCAACACATCTACTTTTTGGAAGTAATTTAACCTT
TGATCATTTAAATCCCAACTAACCCATCAACttcaaaaaacaattgaaat
gtaAATGGTTCTTATCTCAGATATTGTTTTCATTCAGGTGGCCGATTAAT
CTGGCTTTTGGCAATTTGACCAGGCCTATCAGTGAATAGGAATGAAGATT
TGTTTGTTCTATGAATGCTCTAGCACTGGCACAAAAAGATTGGTATTTTG
AACAGTGACTCTAGCTTCAACTTAAGATATTCATATACACatcattttta
taagcaactctgATTGTCAATAATGGCCACATCCCTTCAAAGACAATATC
ATTCCTATTAGGTAGGCACTATGTTTAgctcactttttacacccttttGT
ACTTATCACTCATCTTCACACATTTAGACCCTTACAttgcttttttatat
tgaaaacaTACTCCTCAGGACTGCACGTACTGGAAGTCATTTACTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004498XLOC_004498Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007978-exon-sc0000080-1491911889:605777..606372TCONS_00007978-exon-sc0000080-1491911889:605777..606372Clytia hemisphaericaexon
TCONS_00007978-exon-sc0000080-1510915933:605777..606372TCONS_00007978-exon-sc0000080-1510915933:605777..606372Clytia hemisphaericaexon
TCONS_00007978-exon-sc0000080-1575043694:605777..606372TCONS_00007978-exon-sc0000080-1575043694:605777..606372Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000080supercontigsc0000080:605777..606372 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0744112	0.233898	0	0.239714	3.12676	2.42619	1.33769	1.84421	0.2242	0.602358	0	0.648673	0.610993	0.163524	0.35941	1.87205	1.07417	1.16713	0	0.128963	0.382326	0.715255	0.406326	0	0.0457534	0.24571	0.619085	0.402566	1.166	0.861353
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007978 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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