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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007976 ID=TCONS_00007976|Name=TCONS_00007976|organism=Clytia hemisphaerica|type=transcript|length=741bp
GTCGCAGTAAGTGTTACAAAATGTGTATCTTGAGTAAAATGAAAGTCTTC
GgtgaaaattcgaatgtttcaaGTAAATCTTTGTTCAAGATTGATCTTGA
GACAAAGGTTGATATCACTCGTGCAAAAGTTTTCATCACAAAACGCAAAT
CAGTCGTCGATttgcattcaaaaattgaatccCGAGATGAATTTCATCAG
ATCGGAAAATCCAAGAATCCTCGTGCAATGGCGTTTGCATTGGAGAATTC
AAACATAAAGAAATTGAACACTGGACGTTCTCGAATCAACTTGAAGTTGT
ACCATCGTGTTTTGAAAGCTTCATACAAGAACGCCGTCTTCAAATCAAAA
CCTTTCACCGAGGCTAGCGTTACTATTAAAACAACACAACGAAGCGTGAA
GGATTTCAATGAAGACACAATACCTCGTCCTGAAATTGATACCAAAATGT
CCTTCAAAAAAGTGGATGACAAAGCCTTCAATGAATTGGCTGACAAACTC
AACAAATTGAAAATCTCATCAGACGTTTACCAAGGAGAAAACATCAAGAC
CAACAATCTATTCACAACAACCGATATTGTCACTGAAACCCTAAATGTTT
CTACTGACAAAACACTTGAATCAGTCAACCCAAAAGGACTGAAGAGAAAA
TCGTTGTCAAATGTTGAATATACTAAAGGAAATGATGAGAAAGGAGATTG
TAGGCTAGTCATCAAACGTCAAAGAATCTAAGCCTccgaaa Run BLAST on NCBI protein sequence of TCONS_00007976-protein >TCONS_00007976-protein ID=TCONS_00007976-protein|Name=TCONS_00007976-protein|organism=Clytia hemisphaerica|type=polypeptide|length=242bp
RSKCYKMCILSKMKVFGENSNVSSKSLFKIDLETKVDITRAKVFITKRKS
VVDLHSKIESRDEFHQIGKSKNPRAMAFALENSNIKKLNTGRSRINLKLY
HRVLKASYKNAVFKSKPFTEASVTIKTTQRSVKDFNEDTIPRPEIDTKMS
FKKVDDKAFNELADKLNKLKISSDVYQGENIKTNNLFTTTDIVTETLNVS
TDKTLESVNPKGLKRKSLSNVEYTKGNDEKGDCRLVIKRQRI Run BLAST on NCBI transcript from alignment at sc0000080:548985..549725 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007976 ID=TCONS_00007976|Name=TCONS_00007976|organism=Clytia hemisphaerica|type=transcript|length=741bp|location=Sequence derived from alignment at sc0000080:548985..549725 (Clytia hemisphaerica)
tttcggAGGCTTAGATTCTTTGACGTTTGATGACTAGCCTACAATCTCCT
TTCTCATCATTTCCTTTAGTATATTCAACATTTGACAACGATTTTCTCTT
CAGTCCTTTTGGGTTGACTGATTCAAGTGTTTTGTCAGTAGAAACATTTA
GGGTTTCAGTGACAATATCGGTTGTTGTGAATAGATTGTTGGTCTTGATG
TTTTCTCCTTGGTAAACGTCTGATGAGATTTTCAATTTGTTGAGTTTGTC
AGCCAATTCATTGAAGGCTTTGTCATCCACTTTTTTGAAGGACATTTTGG
TATCAATTTCAGGACGAGGTATTGTGTCTTCATTGAAATCCTTCACGCTT
CGTTGTGTTGTTTTAATAGTAACGCTAGCCTCGGTGAAAGGTTTTGATTT
GAAGACGGCGTTCTTGTATGAAGCTTTCAAAACACGATGGTACAACTTCA
AGTTGATTCGAGAACGTCCAGTGTTCAATTTCTTTATGTTTGAATTCTCC
AATGCAAACGCCATTGCACGAGGATTCTTGGATTTTCCGATCTGATGAAA
TTCATCTCGggattcaatttttgaatgcaaATCGACGACTGATTTGCGTT
TTGTGATGAAAACTTTTGCACGAGTGATATCAACCTTTGTCTCAAGATCA
ATCTTGAACAAAGATTTACttgaaacattcgaattttcacCGAAGACTTT
CATTTTACTCAAGATACACATTTTGTAACACTTACTGCGAC Coding sequence (CDS) from alignment at sc0000080:548985..549725 >TCONS_00007976 ID=TCONS_00007976|Name=TCONS_00007976|organism=Clytia hemisphaerica|type=CDS|length=729bp|location=Sequence derived from alignment at sc0000080:548985..549725 (Clytia hemisphaerica)
TTAGATTCTTTGACGTTTGATGACTAGCCTACAATCTCCTTTCTCATCAT
TTCCTTTAGTATATTCAACATTTGACAACGATTTTCTCTTCAGTCCTTTT
GGGTTGACTGATTCAAGTGTTTTGTCAGTAGAAACATTTAGGGTTTCAGT
GACAATATCGGTTGTTGTGAATAGATTGTTGGTCTTGATGTTTTCTCCTT
GGTAAACGTCTGATGAGATTTTCAATTTGTTGAGTTTGTCAGCCAATTCA
TTGAAGGCTTTGTCATCCACTTTTTTGAAGGACATTTTGGTATCAATTTC
AGGACGAGGTATTGTGTCTTCATTGAAATCCTTCACGCTTCGTTGTGTTG
TTTTAATAGTAACGCTAGCCTCGGTGAAAGGTTTTGATTTGAAGACGGCG
TTCTTGTATGAAGCTTTCAAAACACGATGGTACAACTTCAAGTTGATTCG
AGAACGTCCAGTGTTCAATTTCTTTATGTTTGAATTCTCCAATGCAAACG
CCATTGCACGAGGATTCTTGGATTTTCCGATCTGATGAAATTCATCTCGg
gattcaatttttgaatgcaaATCGACGACTGATTTGCGTTTTGTGATGAA
AACTTTTGCACGAGTGATATCAACCTTTGTCTCAAGATCAATCTTGAACA
AAGATTTACttgaaacattcgaattttcacCGAAGACTTTCATTTTACTC
AAGATACACATTTTGTAACACTTACTGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007976-exon-sc0000080-1491911889:548985..549725 | TCONS_00007976-exon-sc0000080-1491911889:548985..549725 | Clytia hemisphaerica | exon |
| TCONS_00007976-exon-sc0000080-1510915933:548985..549725 | TCONS_00007976-exon-sc0000080-1510915933:548985..549725 | Clytia hemisphaerica | exon |
| TCONS_00007976-exon-sc0000080-1575043694:548985..549725 | TCONS_00007976-exon-sc0000080-1575043694:548985..549725 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000080 | supercontig | sc0000080:548985..549725 . |
Blast
The following BLAST results are available for this feature:
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