TCONS_00007973 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007973
Unique NameTCONS_00007973
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length763

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007973 ID=TCONS_00007973|Name=TCONS_00007973|organism=Clytia hemisphaerica|type=transcript|length=763bp
TAAAAACACCCGCACCTTTAATCAGTTGGACCACAGCAATCGTAGTTGTC
TACTCCATCACAGATCGAAACAGTTTCGCATTGGCACGACACATCCTCGA
AATCATCGACAAGATAAAACCTCTCAGTTCACGGTGTACTCTTTTAATCG
GAAATAAATGCGATCTAATGCATCTCAGACAGGTCCCTAAAAGTGATGCT
AAAAAACTAGCCGATGATTTCGGCGTACACTTCTTAGAGTGTTCAGCGGC
AGAAAATTATGATGATATATTCAGCTCATTTACAAGACTCTTAGTGGAAG
CTATGATTGCACAAAGTGCTAAGAAACATTCATGGGACGATCAGAACGCT
GATGATGTTAAACAGAACGAGAATCGATTACGTAAACGTTCCCTTTCGAC
GGGACAAGCACCTAGTAAAGACAGTAACAACAATACGTCATTCCTTGGCG
GATTACGTGAAAAGAAAGACTCTATGATTAAAATTGATGAACGTATACCA
AGCCCCGTTGAACAGCGTGATACGCCTGCACCGCAACGTAAGCAATCACT
ACGGCGTAAAATATCCGGCATAGGATCAAAACTTGTAGGCTCTGGTCAGA
GCAATAGGTGACCTCTTTAAGACGTTACtacagtttttatttttaatatt
tttcttttttttgtaaataattcGAGGACAGGGTTTAACTTAAAACTAAg
caatttttttattagagAATTTTGAGCCCCTTAAATTTACTGTAAATAAT
CCAAAGTGTGAAT
Run BLAST on NCBI

protein sequence of TCONS_00007973-protein

>TCONS_00007973-protein ID=TCONS_00007973-protein|Name=TCONS_00007973-protein|organism=Clytia hemisphaerica|type=polypeptide|length=202bp
KTPAPLISWTTAIVVVYSITDRNSFALARHILEIIDKIKPLSSRCTLLIG
NKCDLMHLRQVPKSDAKKLADDFGVHFLECSAAENYDDIFSSFTRLLVEA
MIAQSAKKHSWDDQNADDVKQNENRLRKRSLSTGQAPSKDSNNNTSFLGG
LREKKDSMIKIDERIPSPVEQRDTPAPQRKQSLRRKISGIGSKLVGSGQS
NR
Run BLAST on NCBI

transcript from alignment at sc0000080:458585..459347

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007973 ID=TCONS_00007973|Name=TCONS_00007973|organism=Clytia hemisphaerica|type=transcript|length=763bp|location=Sequence derived from alignment at sc0000080:458585..459347 (Clytia hemisphaerica)
ATTCACACTTTGGATTATTTACAGTAAATTTAAGGGGCTCAAAATTctct
aataaaaaaattgcTTAGTTTTAAGTTAAACCCTGTCCTCgaattattta
caaaaaaaagaaaaatattaaaaataaaaactgtaGTAACGTCTTAAAGA
GGTCACCTATTGCTCTGACCAGAGCCTACAAGTTTTGATCCTATGCCGGA
TATTTTACGCCGTAGTGATTGCTTACGTTGCGGTGCAGGCGTATCACGCT
GTTCAACGGGGCTTGGTATACGTTCATCAATTTTAATCATAGAGTCTTTC
TTTTCACGTAATCCGCCAAGGAATGACGTATTGTTGTTACTGTCTTTACT
AGGTGCTTGTCCCGTCGAAAGGGAACGTTTACGTAATCGATTCTCGTTCT
GTTTAACATCATCAGCGTTCTGATCGTCCCATGAATGTTTCTTAGCACTT
TGTGCAATCATAGCTTCCACTAAGAGTCTTGTAAATGAGCTGAATATATC
ATCATAATTTTCTGCCGCTGAACACTCTAAGAAGTGTACGCCGAAATCAT
CGGCTAGTTTTTTAGCATCACTTTTAGGGACCTGTCTGAGATGCATTAGA
TCGCATTTATTTCCGATTAAAAGAGTACACCGTGAACTGAGAGGTTTTAT
CTTGTCGATGATTTCGAGGATGTGTCGTGCCAATGCGAAACTGTTTCGAT
CTGTGATGGAGTAGACAACTACGATTGCTGTGGTCCAACTGATTAAAGGT
GCGGGTGTTTTTA

Coding sequence (CDS) from alignment at sc0000080:458585..459347

>TCONS_00007973 ID=TCONS_00007973|Name=TCONS_00007973|organism=Clytia hemisphaerica|type=CDS|length=609bp|location=Sequence derived from alignment at sc0000080:458585..459347 (Clytia hemisphaerica)
TCACCTATTGCTCTGACCAGAGCCTACAAGTTTTGATCCTATGCCGGATA
TTTTACGCCGTAGTGATTGCTTACGTTGCGGTGCAGGCGTATCACGCTGT
TCAACGGGGCTTGGTATACGTTCATCAATTTTAATCATAGAGTCTTTCTT
TTCACGTAATCCGCCAAGGAATGACGTATTGTTGTTACTGTCTTTACTAG
GTGCTTGTCCCGTCGAAAGGGAACGTTTACGTAATCGATTCTCGTTCTGT
TTAACATCATCAGCGTTCTGATCGTCCCATGAATGTTTCTTAGCACTTTG
TGCAATCATAGCTTCCACTAAGAGTCTTGTAAATGAGCTGAATATATCAT
CATAATTTTCTGCCGCTGAACACTCTAAGAAGTGTACGCCGAAATCATCG
GCTAGTTTTTTAGCATCACTTTTAGGGACCTGTCTGAGATGCATTAGATC
GCATTTATTTCCGATTAAAAGAGTACACCGTGAACTGAGAGGTTTTATCT
TGTCGATGATTTCGAGGATGTGTCGTGCCAATGCGAAACTGTTTCGATCT
GTGATGGAGTAGACAACTACGATTGCTGTGGTCCAACTGATTAAAGGTGC
GGGTGTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004493XLOC_004493Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007973-proteinTCONS_00007973-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007973-exon-sc0000080-1491911889:458585..459347TCONS_00007973-exon-sc0000080-1491911889:458585..459347Clytia hemisphaericaexon
TCONS_00007973-exon-sc0000080-1510915933:458585..459347TCONS_00007973-exon-sc0000080-1510915933:458585..459347Clytia hemisphaericaexon
TCONS_00007973-exon-sc0000080-1575043694:458585..459347TCONS_00007973-exon-sc0000080-1575043694:458585..459347Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000080supercontigsc0000080:458585..459347 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.088529	0	0	0	38.8508	29.0512	1.80292	1.71628	0.77101	1.33872	0.437946	1.15333	9.32044	8.43239	13.8865	12.7374	10.9856	6.83414	4.29314	3.61691	4.35365	3.85239	2.82014	4.75825	4.73451	10.4047	5.80648	3.14063	0.478825	0.36735
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001806Small_GTPase
IPR020849Small_GTPase_Ras
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0007165signal transduction
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007165 signal transduction
cellular_component GO:0016020 membrane
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
Blast
[Close]
BLAST of TCONS_00007973 vs. Swiss-Prot (Human)
Match: RSLBA (Ras-like protein family member 11A OS=Homo sapiens GN=RASL11A PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.769e-17
Identity = 37/94 (39.36%), Postives = 55/94 (58.51%), Query Frame = 3 
Query:   21 ISWTTAIVVVYSITDRNSFALARHILEIIDKIKPLSSRCTLLIGNKCDLMHLRQVPKSDAKKLADDFGVHFLECSAAENYDDIFSSFTRLLVEA 302
            + W    ++VYSITD +S+   R + + I K+ P S    +++GNK DL+H RQV   D  +LA++ G  FLE S +ENY+D+   F  L  E 
Sbjct:  103 VQWAEGFLLVYSITDYDSYLSIRPLYQHIRKVHPDSKAPVIIVGNKGDLLHARQVQTQDGIQLANELGSLFLEISTSENYEDVCDVFQHLCKEV 196
The following BLAST results are available for this feature:
BLAST of TCONS_00007973 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RSLBA1.769e-1739.36Ras-like protein family member 11A OS=Homo sapiens... [more]
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