TCONS_00007968 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007968
Unique NameTCONS_00007968
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length651

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007968 ID=TCONS_00007968|Name=TCONS_00007968|organism=Clytia hemisphaerica|type=transcript|length=651bp
GCGAAATTTGCCCTTTAGAAGCACTgtttatataatttttgaagggTTGG
TCTCATGGAATCGTTGGATGTAACAAATAACTCCATAATGTGGATGGAAA
CATATATCGTATTTGGTTTAATTATCTCATGCTTCAATATTCTACAAATC
ATAGTCATctataaaatcaacaaaaaaatcccaaaatcaaTGATCTTCAT
CTTGAATCTATCCTGCTCCGATTTGTTTGTTGGAACAGTCGTAGCTTTGT
CCGCCATTTTGAGAATAATTGTACCACCTCAAAATGAAGGTCTCTTTATT
CAAACTTTGCGATATTGTGGATTAAGGATTGGACTTGTGATATCTTTGGG
AAACTTGGTGCTGATTGCTTTCGATCGCTTATTAAGTGTTTTTTACCCAT
TCAAATATCCACTCATACCTCGGAGGAGGtttatcatttttattgttATC
ATTTGGAGTATATCAATAGCTTCGCCTTTAATCTGGTTTGTTGTTTTGTC
AGAAGCAGATCCTGAGATATTCTTCAGGAAAAGTAACATTGGATTTCCTA
TATTAACGATTTTCGCAATctcggaaatgattttttcgtACGTTTTTATA
TGGTTTCGTATTCGtcgacaaaaccgaaaattcgcTATACGAGATACCGA
A
Run BLAST on NCBI

protein sequence of TCONS_00007968-protein

>TCONS_00007968-protein ID=TCONS_00007968-protein|Name=TCONS_00007968-protein|organism=Clytia hemisphaerica|type=polypeptide|length=199bp
MESLDVTNNSIMWMETYIVFGLIISCFNILQIIVIYKINKKIPKSMIFIL
NLSCSDLFVGTVVALSAILRIIVPPQNEGLFIQTLRYCGLRIGLVISLGN
LVLIAFDRLLSVFYPFKYPLIPRRRFIIFIVIIWSISIASPLIWFVVLSE
ADPEIFFRKSNIGFPILTIFAISEMIFSYVFIWFRIRRQNRKFAIRDTE
Run BLAST on NCBI

transcript from alignment at sc0000080:298162..298812

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007968 ID=TCONS_00007968|Name=TCONS_00007968|organism=Clytia hemisphaerica|type=transcript|length=651bp|location=Sequence derived from alignment at sc0000080:298162..298812 (Clytia hemisphaerica)
TTCGGTATCTCGTATAgcgaattttcggttttgtcgaCGAATACGAAACC
ATATAAAAACGTacgaaaaaatcatttccgagATTGCGAAAATCGTTAAT
ATAGGAAATCCAATGTTACTTTTCCTGAAGAATATCTCAGGATCTGCTTC
TGACAAAACAACAAACCAGATTAAAGGCGAAGCTATTGATATACTCCAAA
TGATaacaataaaaatgataaaCCTCCTCCGAGGTATGAGTGGATATTTG
AATGGGTAAAAAACACTTAATAAGCGATCGAAAGCAATCAGCACCAAGTT
TCCCAAAGATATCACAAGTCCAATCCTTAATCCACAATATCGCAAAGTTT
GAATAAAGAGACCTTCATTTTGAGGTGGTACAATTATTCTCAAAATGGCG
GACAAAGCTACGACTGTTCCAACAAACAAATCGGAGCAGGATAGATTCAA
GATGAAGATCAttgattttgggatttttttgttgattttatagATGACTA
TGATTTGTAGAATATTGAAGCATGAGATAATTAAACCAAATACGATATAT
GTTTCCATCCACATTATGGAGTTATTTGTTACATCCAACGATTCCATGAG
ACCAAcccttcaaaaattatataaacAGTGCTTCTAAAGGGCAAATTTCG
C

Coding sequence (CDS) from alignment at sc0000080:298162..298812

>TCONS_00007968 ID=TCONS_00007968|Name=TCONS_00007968|organism=Clytia hemisphaerica|type=CDS|length=597bp|location=Sequence derived from alignment at sc0000080:298162..298812 (Clytia hemisphaerica)
TTCGGTATCTCGTATAgcgaattttcggttttgtcgaCGAATACGAAACC
ATATAAAAACGTacgaaaaaatcatttccgagATTGCGAAAATCGTTAAT
ATAGGAAATCCAATGTTACTTTTCCTGAAGAATATCTCAGGATCTGCTTC
TGACAAAACAACAAACCAGATTAAAGGCGAAGCTATTGATATACTCCAAA
TGATaacaataaaaatgataaaCCTCCTCCGAGGTATGAGTGGATATTTG
AATGGGTAAAAAACACTTAATAAGCGATCGAAAGCAATCAGCACCAAGTT
TCCCAAAGATATCACAAGTCCAATCCTTAATCCACAATATCGCAAAGTTT
GAATAAAGAGACCTTCATTTTGAGGTGGTACAATTATTCTCAAAATGGCG
GACAAAGCTACGACTGTTCCAACAAACAAATCGGAGCAGGATAGATTCAA
GATGAAGATCAttgattttgggatttttttgttgattttatagATGACTA
TGATTTGTAGAATATTGAAGCATGAGATAATTAAACCAAATACGATATAT
GTTTCCATCCACATTATGGAGTTATTTGTTACATCCAACGATTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004488XLOC_004488Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007968-exon-sc0000080-1491911889:298162..298812TCONS_00007968-exon-sc0000080-1491911889:298162..298812Clytia hemisphaericaexon
TCONS_00007968-exon-sc0000080-1510915933:298162..298812TCONS_00007968-exon-sc0000080-1510915933:298162..298812Clytia hemisphaericaexon
TCONS_00007968-exon-sc0000080-1575043694:298162..298812TCONS_00007968-exon-sc0000080-1575043694:298162..298812Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007968-proteinTCONS_00007968-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000080supercontigsc0000080:298162..298812 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0908817	0	0	0	0	0.09661	0.135278	0	0	0	0.624745	0.132428	0	0	0.134623	0.112229	1.36191	2.06734	0.658579	1.02205	0.186246	0.276513	0	0	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007968 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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