TCONS_00007966 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007966
Unique NameTCONS_00007966
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length463

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007966 ID=TCONS_00007966|Name=TCONS_00007966|organism=Clytia hemisphaerica|type=transcript|length=463bp
TGTTGATGCCAGTAATGCATTTAATTCACTAAATAGGAAAGCAGCATTGC
ATAATATCAGGATAATGTGTCCCCAATTCTCATTTATATTAACAAATATG
TATCGAATACCAGTTCGTATGATCGTGCATGGAAGTAGAGATATTCTGTC
AGTTGAGGGGACTACTCAAGGTGACAATCTTGCAATGTCTTTTTACGCCT
TGGGTATCACTCCcattattgattttttgaaagacaAAGTAAAGTCTGTG
AAAAATGTTTCTCTTGCGGATGATATTACAGGAGCTGGAAAACTGTCAGA
TTTAAAAGTATGGTGGTAGACATTGATTGAGGAAGGCAAGAAATATGGAT
ACTTTGTAAATGAGAGCAAAAGTTGGTTGATTGTGAAGGAGAGAGAGAAG
ATGGAAAGTGCCCAGGAGATATTTCAAAACTCAGAAATCAAATACACAAC
CGAAGGAAAGCGG
Run BLAST on NCBI

protein sequence of TCONS_00007966-protein

>TCONS_00007966-protein ID=TCONS_00007966-protein|Name=TCONS_00007966-protein|organism=Clytia hemisphaerica|type=polypeptide|length=105bp
VDASNAFNSLNRKAALHNIRIMCPQFSFILTNMYRIPVRMIVHGSRDILS
VEGTTQGDNLAMSFYALGITPIIDFLKDKVKSVKNVSLADDITGAGKLSD
LKVWW
Run BLAST on NCBI

transcript from alignment at sc0000080:111427..111889

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007966 ID=TCONS_00007966|Name=TCONS_00007966|organism=Clytia hemisphaerica|type=transcript|length=463bp|location=Sequence derived from alignment at sc0000080:111427..111889 (Clytia hemisphaerica)
CCGCTTTCCTTCGGTTGTGTATTTGATTTCTGAGTTTTGAAATATCTCCT
GGGCACTTTCCATCTTCTCTCTCTCCTTCACAATCAACCAACTTTTGCTC
TCATTTACAAAGTATCCATATTTCTTGCCTTCCTCAATCAATGTCTACCA
CCATACTTTTAAATCTGACAGTTTTCCAGCTCCTGTAATATCATCCGCAA
GAGAAACATTTTTCACAGACTTTACTTtgtctttcaaaaaatcaataatg
GGAGTGATACCCAAGGCGTAAAAAGACATTGCAAGATTGTCACCTTGAGT
AGTCCCCTCAACTGACAGAATATCTCTACTTCCATGCACGATCATACGAA
CTGGTATTCGATACATATTTGTTAATATAAATGAGAATTGGGGACACATT
ATCCTGATATTATGCAATGCTGCTTTCCTATTTAGTGAATTAAATGCATT
ACTGGCATCAACA

Coding sequence (CDS) from alignment at sc0000080:111427..111889

>TCONS_00007966 ID=TCONS_00007966|Name=TCONS_00007966|organism=Clytia hemisphaerica|type=CDS|length=318bp|location=Sequence derived from alignment at sc0000080:111427..111889 (Clytia hemisphaerica)
CTACCACCATACTTTTAAATCTGACAGTTTTCCAGCTCCTGTAATATCAT
CCGCAAGAGAAACATTTTTCACAGACTTTACTTtgtctttcaaaaaatca
ataatgGGAGTGATACCCAAGGCGTAAAAAGACATTGCAAGATTGTCACC
TTGAGTAGTCCCCTCAACTGACAGAATATCTCTACTTCCATGCACGATCA
TACGAACTGGTATTCGATACATATTTGTTAATATAAATGAGAATTGGGGA
CACATTATCCTGATATTATGCAATGCTGCTTTCCTATTTAGTGAATTAAA
TGCATTACTGGCATCAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004486XLOC_004486Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007966-proteinTCONS_00007966-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007966-exon-sc0000080-1491911889:111427..111889TCONS_00007966-exon-sc0000080-1491911889:111427..111889Clytia hemisphaericaexon
TCONS_00007966-exon-sc0000080-1510915933:111427..111889TCONS_00007966-exon-sc0000080-1510915933:111427..111889Clytia hemisphaericaexon
TCONS_00007966-exon-sc0000080-1575043694:111427..111889TCONS_00007966-exon-sc0000080-1575043694:111427..111889Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000080supercontigsc0000080:111427..111889 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.495562	0	0.166103	0.37688	0.373784	0.29537	0.593977	0.625416	0.446978	0.582254	1.83964	0.252897	0	0.192943	0.475876	0.903619	0.208073	0.153431	0.176403	0.554913	0.226177	0.392145	0.827269	1.1648	0	0	1.18006	0.405611	0	0.473852
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007966 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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