TCONS_00007965 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007965
Unique NameTCONS_00007965
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length651

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007965 ID=TCONS_00007965|Name=TCONS_00007965|organism=Clytia hemisphaerica|type=transcript|length=651bp
GGCTGACAGTTTTACCATTACAGGAATATGGTTTCGCTTTAAACAAAGGA
GAATTCAGGGATGCAGTCAGACTGAGATATAACAGAGAACTGAAAGGACT
ACCCTCTAACTGTCCATGTGGTCAAAAGTTCGACCTCAACCACGCCCTCA
ACTGCAAAAAAGGAGGGTTTGTCATTATCAGACACAACAATATAAGGGAT
TTCGAAGCTAGCCTTTTATCAGAAGTACACCGAGACGTTGAGATTGAACC
TCCGCTGCAACCCATCGATGGAGAGAGAGTAGGAGGACTGAATGGAGACA
ATGCAAGACCAGACGTGAGAGCTAGAGGGGTGTGGAGACCTGGACAAAAC
GCTTACTTTGATGTGAGAGTGACAAATACGAACAGTCAATCACAGGTTCA
GGTGTCCACACAAAAAACGTTGGAAAAGCACGAACGAGAAAAGAAACGTC
AGTACAACCAGAGAGTGATGAACATTGAGCATGGTACTTTCACCCCATTA
ATTTTTTCAGTGACGGGTGTGATGGCCAAAGAATGTTCAATTTATCACAA
GCATCTTGCAGACAAGATCGCAAGAAAAACTGAAGAACAATACAGCAAAG
TGATTGGTGTTATTAGATGTAGACTCTCTTTCTTGATCCTGAGGGCGGCA
C
Run BLAST on NCBI

protein sequence of TCONS_00007965-protein

>TCONS_00007965-protein ID=TCONS_00007965-protein|Name=TCONS_00007965-protein|organism=Clytia hemisphaerica|type=polypeptide|length=216bp
LTVLPLQEYGFALNKGEFRDAVRLRYNRELKGLPSNCPCGQKFDLNHALN
CKKGGFVIIRHNNIRDFEASLLSEVHRDVEIEPPLQPIDGERVGGLNGDN
ARPDVRARGVWRPGQNAYFDVRVTNTNSQSQVQVSTQKTLEKHEREKKRQ
YNQRVMNIEHGTFTPLIFSVTGVMAKECSIYHKHLADKIARKTEEQYSKV
IGVIRCRLSFLILRAA
Run BLAST on NCBI

transcript from alignment at sc0000080:109595..110245

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007965 ID=TCONS_00007965|Name=TCONS_00007965|organism=Clytia hemisphaerica|type=transcript|length=651bp|location=Sequence derived from alignment at sc0000080:109595..110245 (Clytia hemisphaerica)
GTGCCGCCCTCAGGATCAAGAAAGAGAGTCTACATCTAATAACACCAATC
ACTTTGCTGTATTGTTCTTCAGTTTTTCTTGCGATCTTGTCTGCAAGATG
CTTGTGATAAATTGAACATTCTTTGGCCATCACACCCGTCACTGAAAAAA
TTAATGGGGTGAAAGTACCATGCTCAATGTTCATCACTCTCTGGTTGTAC
TGACGTTTCTTTTCTCGTTCGTGCTTTTCCAACGTTTTTTGTGTGGACAC
CTGAACCTGTGATTGACTGTTCGTATTTGTCACTCTCACATCAAAGTAAG
CGTTTTGTCCAGGTCTCCACACCCCTCTAGCTCTCACGTCTGGTCTTGCA
TTGTCTCCATTCAGTCCTCCTACTCTCTCTCCATCGATGGGTTGCAGCGG
AGGTTCAATCTCAACGTCTCGGTGTACTTCTGATAAAAGGCTAGCTTCGA
AATCCCTTATATTGTTGTGTCTGATAATGACAAACCCTCCTTTTTTGCAG
TTGAGGGCGTGGTTGAGGTCGAACTTTTGACCACATGGACAGTTAGAGGG
TAGTCCTTTCAGTTCTCTGTTATATCTCAGTCTGACTGCATCCCTGAATT
CTCCTTTGTTTAAAGCGAAACCATATTCCTGTAATGGTAAAACTGTCAGC
C

Coding sequence (CDS) from alignment at sc0000080:109595..110245

>TCONS_00007965 ID=TCONS_00007965|Name=TCONS_00007965|organism=Clytia hemisphaerica|type=CDS|length=648bp|location=Sequence derived from alignment at sc0000080:109595..110245 (Clytia hemisphaerica)
TGCCGCCCTCAGGATCAAGAAAGAGAGTCTACATCTAATAACACCAATCA
CTTTGCTGTATTGTTCTTCAGTTTTTCTTGCGATCTTGTCTGCAAGATGC
TTGTGATAAATTGAACATTCTTTGGCCATCACACCCGTCACTGAAAAAAT
TAATGGGGTGAAAGTACCATGCTCAATGTTCATCACTCTCTGGTTGTACT
GACGTTTCTTTTCTCGTTCGTGCTTTTCCAACGTTTTTTGTGTGGACACC
TGAACCTGTGATTGACTGTTCGTATTTGTCACTCTCACATCAAAGTAAGC
GTTTTGTCCAGGTCTCCACACCCCTCTAGCTCTCACGTCTGGTCTTGCAT
TGTCTCCATTCAGTCCTCCTACTCTCTCTCCATCGATGGGTTGCAGCGGA
GGTTCAATCTCAACGTCTCGGTGTACTTCTGATAAAAGGCTAGCTTCGAA
ATCCCTTATATTGTTGTGTCTGATAATGACAAACCCTCCTTTTTTGCAGT
TGAGGGCGTGGTTGAGGTCGAACTTTTGACCACATGGACAGTTAGAGGGT
AGTCCTTTCAGTTCTCTGTTATATCTCAGTCTGACTGCATCCCTGAATTC
TCCTTTGTTTAAAGCGAAACCATATTCCTGTAATGGTAAAACTGTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004485XLOC_004485Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007965-proteinTCONS_00007965-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007965-exon-sc0000080-1491911889:109595..110245TCONS_00007965-exon-sc0000080-1491911889:109595..110245Clytia hemisphaericaexon
TCONS_00007965-exon-sc0000080-1510915933:109595..110245TCONS_00007965-exon-sc0000080-1510915933:109595..110245Clytia hemisphaericaexon
TCONS_00007965-exon-sc0000080-1575043694:109595..110245TCONS_00007965-exon-sc0000080-1575043694:109595..110245Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000080supercontigsc0000080:109595..110245 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.240799	0.547907	0.272645	0.711309	1.7319	0.598749	1.34154	2.31864	1.01458	0.670254	1.54509	0.908768	0.854122	0.720699	0.911558	1.2228	1.38588	1.79104	0.853249	1.60716	1.47452	0.681364	1.10438	1.67341	0.861785	0.69221	2.42135	1.52698	0.534537	0.272304
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007965 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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