TCONS_00007962 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007962
Unique NameTCONS_00007962
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2428

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007962 ID=TCONS_00007962|Name=TCONS_00007962|organism=Clytia hemisphaerica|type=transcript|length=2428bp
TAGAACCTAAGAAATCTGTCTAATTAGgatttttcctttcaaaacgTCTC
GCCCCTCTTTGACATAATTTCCTGGCCATTAACTTaaaaccttatttatt
ttttcagtgatgtaaaatttgaaaatcatgaaatataaaTAATAACAGAC
AACACCATGAATGACAATTTCACCATGGAGACTAGAAAGGTTATACATGA
AGGATTCTTGAAGAAGTCTCCACCtcaagcaaaaattgaaaaaggctTCA
AGTGGCACAAGAGATATTTTCGACTATGTTCTGACAAAACACTGGAATAc
tacaaagaaaagaaagaaaagaagccTTTAAAAGAACCTATCGATTTGAG
AAATTGTCAAAATGTTGTACCTGACCCAAATGAAGAAGAATTCAAAATCA
GTGGTGTAAAGTTTGGTGAGAAATGGCGTTGGTTCTTCAAACTTGAGACA
CCTGAACGAACTTATCATTTCATCGCTTCCACTAAAAGTGACATGAATCA
ATGGATCGAGAAAATTAACATGttgaatcaaaatcaatttacagaTTCAG
ATGGAATAGAGCTACCTAACCGATCAAACTCATTATCAAGTGCTGTATCC
ACAACAAGTAGTAGTTCTAATATGTCCTCTCCCGTTATGGTCAGGACCAG
TCCAAGTTCTCGGAGACCATCAAACCAATCTGCATCAAGATCAAGAGCTA
GTTCAGCTCATTCTCAAGAACATTATCGAGTACCAGGAATATCCAATAGA
TTCAATACTACACCAGCATCTGAAATGTTCGCAAAGGTAACTGTTGAATT
GCCTCGCACATTGATTTCCCATGCGCCAATCCAATCAGATGTTGGTACCA
CCCCGGATGGATATGATATTTTAGATGTGGTCAATCAAACTGATCATGAA
GATATTTATAAAGTTCCTATCAATAATACACCCTCCTCATCTTACTCCAT
ACCACCCAATCGACCAGTACCTATTCCCAAACAATCAACCTCCAAACCGC
CGCCACCACTTCCAAACCCAGCAACTAAACAAGCTCCAACACGAACACCT
GATTTTGGAATGATAGGTTACGAAAAAATGGAtcccaaaaatgaaaaaca
acaacaacaacagcatcaTCAAGATTCAGATTCTTATGAACTTTCTTATT
ATCCTATGAGACCAAAGGATGAACTGCCATCTAGAACACACACAGGACCA
AGTCCTGAAAAGAAATTCACAACAATGCCATGGATGCTAAGAGATACAAA
TTCACAAAAATCTTCCTCTCTTCCACGCCATCATGTTGCGACACCGGATG
TCCCACCAAAAAGAGAAGATCCATCCTTCTCTGAAATACCAAGTGTTACA
CCTAAATCCCCTAATGATAGTGAAGACCCACCTCCTGTGCAGCGAGAAAC
AAAGCCTAATTTGCCACCGCGTGTTGACCGTGCAAAGAAGCCGTCCTCTT
CTACTTTACCACCACACTGGCGTCTGCAAGGGGAAGATAGTTTTGATGCC
GAAGCGACCTTTGCTGTACTCTCCAGTTGAAGGCAATCGATACAACTCTC
AATCTTCTGAAGAAGCCAGAGAAAGAGAGGTGGAGATCGAAGAATCCGAA
CCTGGTAGTGGTCACTACCTTATTGTTGATGTCACAGCCACCAAAGCTGT
TGAAGGCGGTTTGGTTAACCGGGAAAGTCCTATAAATTGTGCCAGATGAG
AGTAaaatgaaatttgttttgaatttaagTTACAGTTTTATTGGAAAAGG
CTTTTATTTAACATACCTTGATGAAGTGTCGATCATTTCAACAACAGACC
TTTTGGCCTTTTTGTTCATATGTATTTTTACCTTATAATAATGCATACTA
CAGTATTAAAAAATGATGTACTATaattctaaaaacattttttaccaATG
ATTTACTTTGTTTTGTAATTTTATACCTTTTTTACTGAATtctataattt
atttttgtgtaaTGATTCATTTNAAAACATTTTTTACCAATGATTTACTT
TGTTTTGTAATTTTATACCTTTTTTACTGAATtctataatttatttttgt
gtaaTGATTCATTTTAATATAATCACTTTTCTATCAAACTTATTTTTGAG
GATTTATCTCTATTTTTGTAGTGATTTTTTATGGAATATAATCAAATTTA
TTTCgtattgttttgtatttttattgaaGTATTTTCAGTGTCTAAAACAA
AACTAGAGTACCTCGATCGTGTCTCATGATAAGTTAGTTAAATTGAACCC
TAAGGAAGGACCAGAAAAGACAGACCTGGTATGGGTCCAAGTTTTAATAA
CTTTATATCCGTTTTCAcattatttttagaaattttctataaaaatatct
TGTACATAGCTAACGTATTTTTTGTTCCTGTCAAAATATTATTATTGCAA
ATTTAACAAATTGCGGGAAAAACTCAAA
Run BLAST on NCBI

transcript from alignment at sc0000080:709668..713741-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007962 ID=TCONS_00007962|Name=TCONS_00007962|organism=Clytia hemisphaerica|type=transcript|length=4074bp|location=Sequence derived from alignment at sc0000080:709668..713741- (Clytia hemisphaerica)
TAGAACCTAAGAAATCTGTCTAATTAGGATTTTTCCTTTCAAAACGTCTC
GCCCCTCTTTGACATAATTTCCTGGCCATTAACTTAAAACCTTATTTATT
TTTTCAGTGATGTAAAATTTGAAAATCATGAAATATAAATAATAACAGAC
AACACCATGAATGACAATTTCACCATGGAGACTAGAAAGGTTATACATGA
AGGATTCTTGAAGAAGTCTCCACCTCAAGCAAAAATTGAAAAAGGCTTCA
AGGTAAGCAAGCTTATAAGCTCATATTTTTAAGTGATTGTTTACAAACAT
GAAAGTAGCTTAAAAATTGATTCTAAATTTCTTATTTCCCACTTTCTTTA
CTTATTTTTGGACGCCAATATAAGATGTCAAACTTGCTGTTCCAACTGTT
TTTAGGTTGTCCCTCACTTTTCTATCGATATCAGATAAATACTTGACTGC
CTTGCAATGCTGGTTTATGTTTCTTTTGTTCCAAATGGAAAATAATAAGT
ATATTAATATCACAATGATGATTATTTTCTAGTGGCACAAGAGATATTTT
CGACTATGTTCTGACAAAACACTGGAATACTACAAAGAAAAGAAAGAAAA
GAAGCCTTTAAAAGAACCTATCGATTTGAGAAATTGTCAAAATGTTGTAC
CTGACCCAAATGAAGAAGAATTCAAAATCAGTGGTGTAAAGTTTGGTGAG
AAATGGCGTTGGTTCTTCAAACTTGAGACACCTGAACGAACTTATCATTT
CATCGCTTCCACTAAAAGTGACATGAATCAATGGATCGAGAAAATTAACA
TGTTGAATCAAAATCAATTTACAGGTATCCTTAAATTATGGATTTCATGG
ACTTCTAACTAAATACACCCTTCCCTTATTCACTATTTGTCATATTCTTG
CCTCAAATAAAACTTTTTTATAAAACTTTTTTTCTTAAAATTTAGATTCA
GATGGAATAGAGCTACCTAACCGATCAAACTCATTATCAAGTGCTGTATC
CACAACAAGTAGTAGTTCTAATATGTCCTCTCCCGTTATGGTCAGGACCA
GTCCAAGTTCTCGGAGACCATCAAACCAATCTGCATCAAGATCAAGAGCT
AGTTCAGCTCATTCTCAAGAACATTATCGAGTACCAGGAATATCCAATAG
ATTCAATACTACACCAGCATCTGAAATGTTCGCAAAGGTAACTGTTGAAT
TGCCTCGCACATTGATTTCCCATGCGCCAATCCAATCAGATGTTGGTACC
ACCCCGGATGGATATGATATTTTAGATGTGGTCAATCAAACTGATCATGA
AGATATTTATAAAGTTCCTATCAATAATACACCCTCCTCATCTTACTCCA
TACCACCCAATCGACCAGTACCTATTCCCAAACAATCAACCTCCAAACCG
CCGCCACCACTTCCAAACCCAGCAACTAAACAAGCTCCAACACGAACACC
TGATTTTGGAATGATAGGTTACGAAAAAATGGATCCCAAAAATGAAAAAC
AACAACAACAACAGCATCATCAAGATTCAGATTCTTATGAACTTTCTTAT
TATCCTATGAGACCAAAGGATGAACTGCCATCTAGAACACACACAGGACC
AAGTCCTGAAAAGAAATTCACAACAATGCCATGGATGCTAAGAGATACAA
ATTCACAAAAATCTTCCTCTCTTCCACGCCATCATGTTGCGACACCGGAT
GTCCCACCAAAAAGAGAAGATCCATCCTTCTCTGAAATACCAAGTGTTAC
ACCTAAATCCCCTAATGATAGTGAAGGTATCAAATCTTGGGATCTAACAG
CTGATAGTACTTTATCTTCCCTAGATTACTTATGGAAAGCTATAATTCTC
CTTTTTTCCCAAGTTAACTATTCAAGCTTTAAAGAAATCCATCATTTTCC
CTACAATCCATTATAACTTAATATATTTCTTTCATTTCTTAAACTGGAAT
TGCTAGTCCTTCAGTAATCAATACTTTAGATTCTATTCTACTCTCTATTT
TTGAAGTAAAATAATCCCTTTAAGAATTCTAAACGTTCTTTGTTTGTCAT
TACAGACCCACCTCCTGTGCAGCGAGAAACAAAGCCTAATTTGCCACCGC
GTGTTGACCGTGCAAAGAAGCCGTCCTCTTCTACTTTACCACCACACTGG
CGTCTGCAAGGGGAAGATAGTTTTGATGGTATGCCTAAACCAAGTTATTA
TAATATTTATGACGATGATAATACAAACTCTGAGCCATTACTTGGCTATA
ACGAACTACCAAATCTGTCATCACGTCCTGATCCTTACCAACAACACCAA
TTAACTAACAACAGCACGACTGCACTTAACGATACAACTGTAACTCTTGA
CTCAGATGGTAATAAACTAACTGTTGATAAAATTGCACATATCAATATAA
AAATCGCACCAGATAATACACGACCAGTACCACCTACACCAGAACAAAAC
ACTACATATGAGAATTCATCTTCTCCAGCACGTAAAGTCTCCTCTGCATC
AAACTCATCAAAAGTCTCATATGAGAATGATGATGCTTTTGATGGGATCA
GTTATGAAAATTTTAAGGACAGGGTAAGCATGAAATGAATGTTTTAGGAT
GTTGAGTATGTCAGTGTGTCTTTATTCTTTGATTTCACTGATGATTGGTG
CCTGAGGACTATGAAACTCTGAGTTTGAAACATAGATATTGTGTCAACTC
TTTATTATATATTCATCCGTTCAAAATATGCACCACCGCTGCAATGTCTT
CTGACATTTCGTTACTATTAAGAAAGCTGCAAGTGGTGTATTGACTAGAA
ACAACAGAATAGTTTCCAGAGGGCATTACAATGGTGCATATTTTGAATCC
TACAGGATGAGACGACTGGGTCCAACCATCAGATTATCAGTGATAAAAAC
CTACAACTGTAGGCTAGGCTTTGAATGTATTATGAAATACTCCATATGAA
ATGCAAGGCTCGTATCATTGCTATTTTCATAGATTGTTATCAATCGCATG
TTTTTGTAAGAAGCTTAAAACTAATCTTTGTAGTCTTTATTTTTTGTAGT
AAAACCTGGTAAAACAATGAATCATTACCCATTCTCCATAGAAGTTATAG
TGGTCGAAAGTTTGATGATTATTTCTTGAATTGTTTGGTTATAGCCGAAG
CGACCTTTGCTGTACTCTCCAGTTGAAGGCAATCGATACAACTCTCAATC
TTCTGAAGAAGCCAGAGAAAGAGAGGTGGAGATCGAAGAATCCGAACCTG
GTAGTGGTCACTACCTTATTGTTGATGTCACAGCCACCAAAGCTGTTGAA
GGCGGTTTGGTTAACCGGGAAAGTCCTATAAATTGTGCCAGATGAGAGTA
AAATGAAATTTGTTTTGAATTTAAGTTACAGTTTTATTGGAAAAGGCTTT
TATTTAACATACCTTGATGAAGTGTCGATCATTTCAACAACAGACCTTTT
GGCCTTTTTGTTCATATGTATTTTTACCTTATAATAATGCATACTACAGT
ATTAAAAAATGATGTACTATAATTCTAAAAACATTTTTTACCAATGATTT
ACTTTGTTTTGTAATTTTATACCTTTTTTACTGAATTCTATAATTTATTT
TTGTGTAATGATTCATTTNAAAACATTTTTTACCAATGATTTACTTTGTT
TTGTAATTTTATACCTTTTTTACTGAATTCTATAATTTATTTTTGTGTAA
TGATTCATTTTAATATAATCACTTTTCTATCAAACTTATTTTTGAGGATT
TATCTCTATTTTTGTAGTGATTTTTTATGGAATATAATCAAATTTATTTC
GTATTGTTTTGTATTTTTATTGAAGTATTTTCAGTGTCTAAAACAAAACT
AGAGTACCTCGATCGTGTCTCATGATAAGTTAGTTAAATTGAACCCTAAG
GAAGGACCAGAAAAGACAGACCTGGTATGGGTCCAAGTTTTAATAACTTT
ATATCCGTTTTCACATTATTTTTAGAAATTTTCTATAAAAATATCTTGTA
CATAGCTAACGTATTTTTTGTTCCTGTCAAAATATTATTATTGCAAATTT
AACAAATTGCGGGAAAAACTCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004483XLOC_004483Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007962-exon-sc0000080-1575043694:713490..713741TCONS_00007962-exon-sc0000080-1575043694:713490..713741Clytia hemisphaericaexon
TCONS_00007962-exon-sc0000080-1575043694:712918..713209TCONS_00007962-exon-sc0000080-1575043694:712918..713209Clytia hemisphaericaexon
TCONS_00007962-exon-sc0000080-1575043694:711966..712796TCONS_00007962-exon-sc0000080-1575043694:711966..712796Clytia hemisphaericaexon
TCONS_00007962-exon-sc0000080-1575043694:711564..711686TCONS_00007962-exon-sc0000080-1575043694:711564..711686Clytia hemisphaericaexon
TCONS_00007962-exon-sc0000080-1575043694:709668..710597TCONS_00007962-exon-sc0000080-1575043694:709668..710597Clytia hemisphaericaexon
TCONS_00007962-exon-sc0000080-1510915933:713490..713741TCONS_00007962-exon-sc0000080-1510915933:713490..713741Clytia hemisphaericaexon
TCONS_00007962-exon-sc0000080-1510915933:712918..713209TCONS_00007962-exon-sc0000080-1510915933:712918..713209Clytia hemisphaericaexon
TCONS_00007962-exon-sc0000080-1510915933:711966..712796TCONS_00007962-exon-sc0000080-1510915933:711966..712796Clytia hemisphaericaexon
TCONS_00007962-exon-sc0000080-1510915933:711564..711686TCONS_00007962-exon-sc0000080-1510915933:711564..711686Clytia hemisphaericaexon
TCONS_00007962-exon-sc0000080-1510915933:709668..710597TCONS_00007962-exon-sc0000080-1510915933:709668..710597Clytia hemisphaericaexon
TCONS_00007962-exon-sc0000080-1491911889:713490..713741TCONS_00007962-exon-sc0000080-1491911889:713490..713741Clytia hemisphaericaexon
TCONS_00007962-exon-sc0000080-1491911889:712918..713209TCONS_00007962-exon-sc0000080-1491911889:712918..713209Clytia hemisphaericaexon
TCONS_00007962-exon-sc0000080-1491911889:711966..712796TCONS_00007962-exon-sc0000080-1491911889:711966..712796Clytia hemisphaericaexon
TCONS_00007962-exon-sc0000080-1491911889:711564..711686TCONS_00007962-exon-sc0000080-1491911889:711564..711686Clytia hemisphaericaexon
TCONS_00007962-exon-sc0000080-1491911889:709668..710597TCONS_00007962-exon-sc0000080-1491911889:709668..710597Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000080supercontigsc0000080:709668..713741 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.64871	0.591353	1.07395	0.591921	0.132406	0	0.953887	0	1.63886	3.35937	0.183508	0.151255	0.326046	0.170864	1.45466	3.22227	2.23131	0	0	0.336632	0.712061	0.946189	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007962 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top