TCONS_00007959 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007959
Unique NameTCONS_00007959
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3292

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007959 ID=TCONS_00007959|Name=TCONS_00007959|organism=Clytia hemisphaerica|type=transcript|length=3292bp
ttcagtgatgtaaaatttgaaaatcatgaaatataaaTAATAACAGACAA
CACCATGAATGACAATTTCACCATGGAGACTAGAAAGGTTATACATGAAG
GATTCTTGAAGAAGTCTCCACCtcaagcaaaaattgaaaaaggctTCAAG
TGGCACAAGAGATATTTTCGACTATGTTCTGACAAAACACTGGAATActa
caaagaaaagaaagaaaagaagccTTTAAAAGAACCTATCGATTTGAGAA
ATTGTCAAAATGTTGTACCTGACCCAAATGAAGAAGAATTCAAAATCAGT
GGTGTAAAGTTTGGTGAGAAATGGCGTTGGTTCTTCAAACTTGAGACACC
TGAACGAACTTATCATTTCATCGCTTCCACTAAAAGTGACATGAATCAAT
GGATCGAGAAAATTAACATGttgaatcaaaatcaatttacagaTTCAGAT
GGAATAGAGCTACCTAACCGATCAAACTCATTATCAAGTGCTGTATCCAC
AACAAGTAGTAGTTCTAATATGTCCTCTCCCGTTATGGTCAGGACCAGTC
CAAGTTCTCGGAGACCATCAAACCAATCTGCATCAAGATCAAGAGCTAGT
TCAGCTCATTCTCAAGAACATTATCGAGTACCAGGAATATCCAATAGATT
CAATACTACACCAGCATCTGAAATGTTCGCAAAGGTAACTGTTGAATTGC
CTCGCACATTGATTTCCCATGCGCCAATCCAATCAGATGTTGGTACCACC
CCGGATGGATATGATATTTTAGATGTGGTCAATCAAACTGATCATGAAGA
TATTTATAAAGTTCCTATCAATAATACACCCTCCTCATCTTACTCCATAC
CACCCAATCGACCAGTACCTATTCCCAAACAATCAACCTCCAAACCGCCG
CCACCACTTCCAAACCCAGCAACTAAACAAGCTCCAACACGAACACCTGA
TTTTGGAATGATAGGTTACGAAAAAATGGAtcccaaaaatgaaaaacaac
aacaacaacagcatcaTCAAGATTCAGATTCTTATGAACTTTCTTATTAT
CCTATGAGACCAAAGGATGAACTGCCATCTAGAACACACACAGGACCAAG
TCCTGAAAAGAAATTCACAACAATGCCATGGATGCTAAGAGATACAAATT
CACAAAAATCTTCCTCTCTTCCACGCCATCATGTTGCGACACCGGATGTC
CCACCAAAAAGAGAAGATCCATCCTTCTCTGAAATACCAAGTGTTACACC
TAAATCCCCTAATGATAGTGAAGACCCACCTCCTGTGCAGCGAGAAACAA
AGCCTAATTTGCCACCGCGTGTTGACCGTGCAAAGAAGCCGTCCTCTTCT
ACTTTACCACCACACTGGCGTCTGCAAGGGGAAGATAGTTTTGATGGTAT
GCCTAAACCAAGTTATTATAATATTTATGACGATGATAATACAAACTCTG
AGCCATTACTTGGCTATAACGAACTACCAAATCTGTCATCACGTCCTGAT
CCTTACCAACAACACCAATTAACTAACAACAGCACGACTGCACTTAACGA
TACAACTGTAACTCTTGACTCAGATGGTAATAAACTAACTGTTGATAAAA
TTGCACATATCAATATAAAAATCGCACCAGATAATACACGACCAGTACCA
CCTACACCAGAACAAAACACTACATATGAGAATTCATCTTCTCCAGCACG
TAAAGTCTCCTCTGCATCAAACTCATCAAAAGTCTCATATGAGAATGATG
ATGCTTTTGATGGGATcagttatgaaaattttaaggacAGGGTAAGCATG
AAATGAATGTTTTAGGATGTTGAGTATGTCAGTGTGTCTTTATTCTTTGA
TTTCACTGATGATTGGTGCCTGAGGActatgaaactctgagtttgaaaca
tagatattgtgtcaactctttattatataTTCATCCGTTCAAAATATGCA
CCACcgctgcaatgtcttctgacatttcGTTACTATTAAGAAAGCTGCAA
GTGGTGTATTGACTAGAAACAACAGAATAGTTTCCAGAGGGcattacaat
ggtgcatattTTGAATCCTACAGGATGAGACGACTGGGTCCAACCATCAG
ATTATCAGTGATAAAAACCTACAACTGTAGGCTAGGCTTTGAATGTATTA
TGAAATACTCCATATGAAATGCAAGGCTCGTATCATTGCTATTTTCATAG
ATTGTTATCAATCGCATGTTTTTGTAAGAAGCTTAAAACTAATCTTTGTA
GTCTTTATTTTTTGTAGTAAAACCTGGTAAAACAATGAATCATTACCCAT
TCTCCATAGAAGTTATAGTGGTCGAAAGTTTGATGATTATTTCTTGAATT
GTTTGGTTATAGCCGAAGCGACCTTTGCTGTACTCTCCAGTTGAAGGCAA
TCGATACAACTCTCAATCTTCTGAAGAAGCCAGAGAAAGAGAGGTGGAGA
TCGAAGAATCCGAACCTGGTAGTGGTCACTACCTTATTGTTGATGTCACA
GCCACCAAAGCTGTTGAAGGCGGTTTGGTTAACCGGGAAAGTCCTATAAA
TTGTGCCAGATGAGAGTAaaatgaaatttgttttgaatttaagTTACAGT
TTTATTGGAAAAGGCTTTTATTTAACATACCTTGATGAAGTGTCGATCAT
TTCAACAACAGACCTTTTGGCCTTTTTGTTCATATGTATTTTTACCTTAT
AATAATGCATACTACAGTATTAAAAAATGATGTACTATaattctaaaaac
attttttaccaATGATTTACTTTGTTTTGTAATTTTATACCTTTTTTACT
GAATtctataatttatttttgtgtaaTGATTCATTTNAAAACATTTTTTA
CCAATGATTTACTTTGTTTTGTAATTTTATACCTTTTTTACTGAATtcta
taatttatttttgtgtaaTGATTCATTTTAATATAATCACTTTTCTATCA
AACTTATTTTTGAGGATTTATCTCTATTTTTGTAGTGATTTTTTATGGAA
TATAATCAAATTTATTTCgtattgttttgtatttttattgaaGTATTTTC
AGTGTCTAAAACAAAACTAGAGTACCTCGATCGTGTCTCATGATAAGTTA
GTTAAATTGAACCCTAAGGAAGGACCAGAAAAGACAGACCTGGTATGGGT
CCAAGTTTTAATAACTTTATATCCGTTTTCAcattatttttagaaatttt
ctataaaaatatctTGTACATAGCTAACGTATTTTTTGTTCCTGTCAAAA
TATTATTATTGCAAATTTAACAAATTGCGGGAAAAACTCAAA
Run BLAST on NCBI

transcript from alignment at sc0000080:709668..713639-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007959 ID=TCONS_00007959|Name=TCONS_00007959|organism=Clytia hemisphaerica|type=transcript|length=3972bp|location=Sequence derived from alignment at sc0000080:709668..713639- (Clytia hemisphaerica)
TTCAGTGATGTAAAATTTGAAAATCATGAAATATAAATAATAACAGACAA
CACCATGAATGACAATTTCACCATGGAGACTAGAAAGGTTATACATGAAG
GATTCTTGAAGAAGTCTCCACCTCAAGCAAAAATTGAAAAAGGCTTCAAG
GTAAGCAAGCTTATAAGCTCATATTTTTAAGTGATTGTTTACAAACATGA
AAGTAGCTTAAAAATTGATTCTAAATTTCTTATTTCCCACTTTCTTTACT
TATTTTTGGACGCCAATATAAGATGTCAAACTTGCTGTTCCAACTGTTTT
TAGGTTGTCCCTCACTTTTCTATCGATATCAGATAAATACTTGACTGCCT
TGCAATGCTGGTTTATGTTTCTTTTGTTCCAAATGGAAAATAATAAGTAT
ATTAATATCACAATGATGATTATTTTCTAGTGGCACAAGAGATATTTTCG
ACTATGTTCTGACAAAACACTGGAATACTACAAAGAAAAGAAAGAAAAGA
AGCCTTTAAAAGAACCTATCGATTTGAGAAATTGTCAAAATGTTGTACCT
GACCCAAATGAAGAAGAATTCAAAATCAGTGGTGTAAAGTTTGGTGAGAA
ATGGCGTTGGTTCTTCAAACTTGAGACACCTGAACGAACTTATCATTTCA
TCGCTTCCACTAAAAGTGACATGAATCAATGGATCGAGAAAATTAACATG
TTGAATCAAAATCAATTTACAGGTATCCTTAAATTATGGATTTCATGGAC
TTCTAACTAAATACACCCTTCCCTTATTCACTATTTGTCATATTCTTGCC
TCAAATAAAACTTTTTTATAAAACTTTTTTTCTTAAAATTTAGATTCAGA
TGGAATAGAGCTACCTAACCGATCAAACTCATTATCAAGTGCTGTATCCA
CAACAAGTAGTAGTTCTAATATGTCCTCTCCCGTTATGGTCAGGACCAGT
CCAAGTTCTCGGAGACCATCAAACCAATCTGCATCAAGATCAAGAGCTAG
TTCAGCTCATTCTCAAGAACATTATCGAGTACCAGGAATATCCAATAGAT
TCAATACTACACCAGCATCTGAAATGTTCGCAAAGGTAACTGTTGAATTG
CCTCGCACATTGATTTCCCATGCGCCAATCCAATCAGATGTTGGTACCAC
CCCGGATGGATATGATATTTTAGATGTGGTCAATCAAACTGATCATGAAG
ATATTTATAAAGTTCCTATCAATAATACACCCTCCTCATCTTACTCCATA
CCACCCAATCGACCAGTACCTATTCCCAAACAATCAACCTCCAAACCGCC
GCCACCACTTCCAAACCCAGCAACTAAACAAGCTCCAACACGAACACCTG
ATTTTGGAATGATAGGTTACGAAAAAATGGATCCCAAAAATGAAAAACAA
CAACAACAACAGCATCATCAAGATTCAGATTCTTATGAACTTTCTTATTA
TCCTATGAGACCAAAGGATGAACTGCCATCTAGAACACACACAGGACCAA
GTCCTGAAAAGAAATTCACAACAATGCCATGGATGCTAAGAGATACAAAT
TCACAAAAATCTTCCTCTCTTCCACGCCATCATGTTGCGACACCGGATGT
CCCACCAAAAAGAGAAGATCCATCCTTCTCTGAAATACCAAGTGTTACAC
CTAAATCCCCTAATGATAGTGAAGGTATCAAATCTTGGGATCTAACAGCT
GATAGTACTTTATCTTCCCTAGATTACTTATGGAAAGCTATAATTCTCCT
TTTTTCCCAAGTTAACTATTCAAGCTTTAAAGAAATCCATCATTTTCCCT
ACAATCCATTATAACTTAATATATTTCTTTCATTTCTTAAACTGGAATTG
CTAGTCCTTCAGTAATCAATACTTTAGATTCTATTCTACTCTCTATTTTT
GAAGTAAAATAATCCCTTTAAGAATTCTAAACGTTCTTTGTTTGTCATTA
CAGACCCACCTCCTGTGCAGCGAGAAACAAAGCCTAATTTGCCACCGCGT
GTTGACCGTGCAAAGAAGCCGTCCTCTTCTACTTTACCACCACACTGGCG
TCTGCAAGGGGAAGATAGTTTTGATGGTATGCCTAAACCAAGTTATTATA
ATATTTATGACGATGATAATACAAACTCTGAGCCATTACTTGGCTATAAC
GAACTACCAAATCTGTCATCACGTCCTGATCCTTACCAACAACACCAATT
AACTAACAACAGCACGACTGCACTTAACGATACAACTGTAACTCTTGACT
CAGATGGTAATAAACTAACTGTTGATAAAATTGCACATATCAATATAAAA
ATCGCACCAGATAATACACGACCAGTACCACCTACACCAGAACAAAACAC
TACATATGAGAATTCATCTTCTCCAGCACGTAAAGTCTCCTCTGCATCAA
ACTCATCAAAAGTCTCATATGAGAATGATGATGCTTTTGATGGGATCAGT
TATGAAAATTTTAAGGACAGGGTAAGCATGAAATGAATGTTTTAGGATGT
TGAGTATGTCAGTGTGTCTTTATTCTTTGATTTCACTGATGATTGGTGCC
TGAGGACTATGAAACTCTGAGTTTGAAACATAGATATTGTGTCAACTCTT
TATTATATATTCATCCGTTCAAAATATGCACCACCGCTGCAATGTCTTCT
GACATTTCGTTACTATTAAGAAAGCTGCAAGTGGTGTATTGACTAGAAAC
AACAGAATAGTTTCCAGAGGGCATTACAATGGTGCATATTTTGAATCCTA
CAGGATGAGACGACTGGGTCCAACCATCAGATTATCAGTGATAAAAACCT
ACAACTGTAGGCTAGGCTTTGAATGTATTATGAAATACTCCATATGAAAT
GCAAGGCTCGTATCATTGCTATTTTCATAGATTGTTATCAATCGCATGTT
TTTGTAAGAAGCTTAAAACTAATCTTTGTAGTCTTTATTTTTTGTAGTAA
AACCTGGTAAAACAATGAATCATTACCCATTCTCCATAGAAGTTATAGTG
GTCGAAAGTTTGATGATTATTTCTTGAATTGTTTGGTTATAGCCGAAGCG
ACCTTTGCTGTACTCTCCAGTTGAAGGCAATCGATACAACTCTCAATCTT
CTGAAGAAGCCAGAGAAAGAGAGGTGGAGATCGAAGAATCCGAACCTGGT
AGTGGTCACTACCTTATTGTTGATGTCACAGCCACCAAAGCTGTTGAAGG
CGGTTTGGTTAACCGGGAAAGTCCTATAAATTGTGCCAGATGAGAGTAAA
ATGAAATTTGTTTTGAATTTAAGTTACAGTTTTATTGGAAAAGGCTTTTA
TTTAACATACCTTGATGAAGTGTCGATCATTTCAACAACAGACCTTTTGG
CCTTTTTGTTCATATGTATTTTTACCTTATAATAATGCATACTACAGTAT
TAAAAAATGATGTACTATAATTCTAAAAACATTTTTTACCAATGATTTAC
TTTGTTTTGTAATTTTATACCTTTTTTACTGAATTCTATAATTTATTTTT
GTGTAATGATTCATTTNAAAACATTTTTTACCAATGATTTACTTTGTTTT
GTAATTTTATACCTTTTTTACTGAATTCTATAATTTATTTTTGTGTAATG
ATTCATTTTAATATAATCACTTTTCTATCAAACTTATTTTTGAGGATTTA
TCTCTATTTTTGTAGTGATTTTTTATGGAATATAATCAAATTTATTTCGT
ATTGTTTTGTATTTTTATTGAAGTATTTTCAGTGTCTAAAACAAAACTAG
AGTACCTCGATCGTGTCTCATGATAAGTTAGTTAAATTGAACCCTAAGGA
AGGACCAGAAAAGACAGACCTGGTATGGGTCCAAGTTTTAATAACTTTAT
ATCCGTTTTCACATTATTTTTAGAAATTTTCTATAAAAATATCTTGTACA
TAGCTAACGTATTTTTTGTTCCTGTCAAAATATTATTATTGCAAATTTAA
CAAATTGCGGGAAAAACTCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004483XLOC_004483Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007959-exon-sc0000080-1575043694:713490..713639TCONS_00007959-exon-sc0000080-1575043694:713490..713639Clytia hemisphaericaexon
TCONS_00007959-exon-sc0000080-1575043694:712918..713209TCONS_00007959-exon-sc0000080-1575043694:712918..713209Clytia hemisphaericaexon
TCONS_00007959-exon-sc0000080-1575043694:711966..712796TCONS_00007959-exon-sc0000080-1575043694:711966..712796Clytia hemisphaericaexon
TCONS_00007959-exon-sc0000080-1575043694:709668..711686TCONS_00007959-exon-sc0000080-1575043694:709668..711686Clytia hemisphaericaexon
TCONS_00007959-exon-sc0000080-1510915933:713490..713639TCONS_00007959-exon-sc0000080-1510915933:713490..713639Clytia hemisphaericaexon
TCONS_00007959-exon-sc0000080-1510915933:712918..713209TCONS_00007959-exon-sc0000080-1510915933:712918..713209Clytia hemisphaericaexon
TCONS_00007959-exon-sc0000080-1510915933:711966..712796TCONS_00007959-exon-sc0000080-1510915933:711966..712796Clytia hemisphaericaexon
TCONS_00007959-exon-sc0000080-1510915933:709668..711686TCONS_00007959-exon-sc0000080-1510915933:709668..711686Clytia hemisphaericaexon
TCONS_00007959-exon-sc0000080-1491911889:713490..713639TCONS_00007959-exon-sc0000080-1491911889:713490..713639Clytia hemisphaericaexon
TCONS_00007959-exon-sc0000080-1491911889:712918..713209TCONS_00007959-exon-sc0000080-1491911889:712918..713209Clytia hemisphaericaexon
TCONS_00007959-exon-sc0000080-1491911889:711966..712796TCONS_00007959-exon-sc0000080-1491911889:711966..712796Clytia hemisphaericaexon
TCONS_00007959-exon-sc0000080-1491911889:709668..711686TCONS_00007959-exon-sc0000080-1491911889:709668..711686Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000080supercontigsc0000080:709668..713639 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.372665	0.226901	0.519261	0.17048	0.702214	1.00436	1.09623	0.936291	0.5615	1.12547	0.257699	1.23626	0.767491	0.36171	0.583498	0.726694	0.756293	0.976095	0.195142	0.649767	1.21483	0.812546	0.287884	0.514749	0.6974	1.11885	0.715397	0.436281	0.950252	0.482901
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007959 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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