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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007958 ID=TCONS_00007958|Name=TCONS_00007958|organism=Clytia hemisphaerica|type=transcript|length=758bp
GTTTCAgaggaaaaactgaaaaaaagtatcgatgtagtaaaacagaaaaa
aaaatctcccCAAGATGTCAGTGTTTCATGACGAGGTAGAAATTGAAGAT
TTCGATTATGATGAAGAATCGGAAACATATTATTATCCCTGCCCGTGTGG
TGACCGCTTCGAGATCACGCGTGAAATGTTGGCGGACGGAGAAGATGTAG
CAACCTGTCCGAGTTGTTCACTCATCATCAAAGTCATTTATGATATTgAT
GATTTTATGGAAGGAGAAGAAGTCGAGGCTGTTCTGCCACCCCGCCCTGT
TGAAAAAGCTTGAACGCCCTTCGAATCAACTTCATTACCTTCTAATAAGC
AAATAATGATTTCATTTGTTATGAATAGATCTGAGCTCAAGTATAAGTGA
GGATGGGTTTCTCCTGAAATTGATGTCCAAAATTCTAGGTCGAGTGGAAG
CTATTGCGCTTCTTTGACTCTTTGAATTAAAAGCTATCATTTATTTTTCT
AGAAGTGAATTTCACtttattttatatcaaattttataGTAATTTTATGG
TGCTTTatagttttaacatttttattgtCATACAAGATATCTAAATAAAG
CCAATCGTCATTGCCAACGGCAAAAAACTCGCCCTTTAATAAAGCTGTAG
TTACCAAGCCAATCATATCTATCATATCGTCATTTAAACTGGTTTTTGAT
TACAATTTTCCTCGAGCATTTTGTTTTTGCAATAGACCATACTTTTTAGT
AGGctatt Run BLAST on NCBI transcript from alignment at sc0000080:706129..709534- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007958 ID=TCONS_00007958|Name=TCONS_00007958|organism=Clytia hemisphaerica|type=transcript|length=3406bp|location=Sequence derived from alignment at sc0000080:706129..709534- (Clytia hemisphaerica)
GTTTCAGAGGAAAAACTGAAAAAAAGTATCGATGTAGTAAAACAGAAAAA
AAAATCTCCCCAAGATGTCAGTGTTTCATGACGAGGTAGAAATTGAAGAT
TTCGATTATGATGAAGAATCGGAAACATATTATTATCCCTGCCCGTGTGG
TGACCGCTTCGAGATCACGCGTGAAATGTTGGCGGACGGAGAAGATGTAG
CAACCTGTCCGAGTTGTTCACTCATCATCAAAGTCATTTATGATATTGTA
AGTTTACCCAGAGGAATGTAAAGAGATGGAAAAACAGCTTCTTGAAAACA
ATGGAAAAACGGCTCGTCATAGACCAGGTCTCTTNCTTTCATTTTCTTGA
CAAAGTGACTCTTTTTGATGAAATTATTGACAAGCTACTTAAGGCCCTTA
AAGCTTGGTCCTCACTTATAGAAAAAATCGCGTCTAATCACTAGACGCCC
GCGTCTAACATTAGACGCGCGCGTCGAGTCCTTAGGCGCGTGCGTCGAGA
AATTATGTCTTTGTTGTCCTCACTACCATGAACTTTTTTGAATTAAAGGA
TTAAAATATGGGAAATGTGAATAAATGAAGTTATGAGTTTGAGCTTCTCT
TCAGTTTATGTTTTCTTATTGAGTGATGGAAAGAAGATGGATAGCAGTGA
TGATGAAAGCTACTTTGATAATTGTGAAGATTTGCTCCTTCTACTTTTGT
TACGAAAATGACAAAATAGGAGAAAAGCGCGTCGCAGGCGGTTTTGGGTA
CGAGATATTTTTCAAGAAAGACCAATCCATGGAACGTTTAATACTCTTGT
TTCAAACATTGCTAAAAGACAGTGAAATGTCTCTTCGGTATCAAAGAATG
ACTCAATCTTGCTTTGAGCATCTTCTCTCACTAATTCAACATCGTATCAG
CAAGAAACCCACTCAATGCGTCAGCCAATATCAGTTAGAGAACGTCTCTT
TGTAACATTAAAGTTTCTGGCCACTGGAGAAAGCCAACAATCCCTGTCAG
AGACATCATACCAGATGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNCCTGTTTGATTCAAAATTGCGAAAAAGTGAAAAAATATATTAGCTTG
ATTTTTTCGAAATCGTTTAGAGGAAGGTTTAACTAAAATTTTGGTATATC
AAACTTTAAAATTGCTTCATTAGATCAAAATNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTACAACTTTGGGG
ACATTTAATTCTGTTTACATTGCGGTGCCTTTGAACGTTAGACGCGCGGA
ACAAAATTTTTTGTTCCACGCGTCTAACAAATTTTGTCAAATTCCAGGCG
TCTAACACTAGACGCCCGCATCTAACACTAGACGCTCGCGTCTAACGAGT
GTACTCACTAGAGGTTCCAAACACTAAGTCGCGCGCGTCTAATGTTAGAC
GAGGGCGTCTAGTGATTAGACGCGATTTTTTCAACAAGTGAGGACCAAGC
TTAAGGGAGTTTAAGTCGAGTAAATAGGTTTCTTTTGTTGTCGCTATAAA
AAATCTGCATAATTAGCGTGTTGTGACAAAATTCTTTTGTTTCAAGCCTG
ATTATGCGCAAACTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGGGTACACCTCT
CCTATACGAAAAGGTACCTATATCTTCTTGCTCAGAATTTCCTAGCGATT
CTACTGATATAACCGCATCATGACCGCACTATAATATGGAAAGCTAGAGC
TCGAGAAAATTATAACTTCATCTTGATTTTACTCGACCTCTGACAGTTTT
ACAAGAACTAATTTAATATCATTGCGTTAAGAATTTCTTTTGCTATACAT
TGGTAAAAATATTGCTCCTTATTCTTAAAAATTGAACTAGTAATCGGCAA
AAAAGGAAAAACAAATTTTCATTTATATCGTCAAATCATGTAGAAACCGT
CCGATTTGTATGGCGAGCCGTCTTTTCTGGACTTTCATTTAATGACCTAA
TCAACGTTTTTACAATAGAATTTTAAATAGAAGTGATCGTTGAACTTTGA
GTAATCAGAAAAGCTGTTTTTCCATCTCTTTACATTCCTCTGGTTTACCA
TCTCCATTAAATTTTTTCAAATTACTTCTTACACTCGAATATATTTTGAA
ACCTCCTTTTATTAGAATTTAAGCTCCTCCTTGAATTTGATCTCGACATG
TAAAAGACAGAAATTTTGTATATTTCATAAATTTTCATTGTTTTTTTGCA
CTCTTAAGCTTGGTACTCACTTGTTGAAAAAGTGCCGTTTAACACTAAAC
GCCGGCGTATAACTTTATACGTGCGCGTCTAAAACCATAAGATCTCTAGT
GAGTACACTCAAAAAGATTTCGTTTCACTTTTTCCCTCTTTCTCTATCTC
TCTTTGCTAAAAAGCTCCCAGTGAGTACCATGTGAGTACATAGATGATCT
GAAAAGTTAAATGCGTGCGTCTAGTGTTAAACGCCACTTTTTTCAACAAG
TGAGTACCAAGCTTTACTAAATACACTTTTTCATTAAATTTTCAGGATGA
TTTTATGGAAGGAGAAGAAGTCGAGGCTGTTCTGCCACCCCGCCCTGTTG
AAAAAGCTTGAACGCCCTTCGAATCAACTTCATTACCTTCTAATAAGCAA
ATAATGATTTCATTTGTTATGAATAGATCTGAGCTCAAGTATAAGTGAGG
ATGGGTTTCTCCTGAAATTGATGTCCAAAATTCTAGGTCGAGTGGAAGCT
ATTGCGCTTCTTTGACTCTTTGAATTAAAAGCTATCATTTATTTTTCTAG
AAGTGAATTTCACTTTATTTTATATCAAATTTTATAGTAATTTTATGGTG
CTTTATAGTTTTAACATTTTTATTGTCATACAAGATATCTAAATAAAGCC
AATCGTCATTGCCAACGGCAAAAAACTCGCCCTTTAATAAAGCTGTAGTT
ACCAAGCCAATCATATCTATCATATCGTCATTTAAACTGGTTTTTGATTA
CAATTTTCCTCGAGCATTTTGTTTTTGCAATAGACCATACTTTTTAGTAG
GCTATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007958-exon-sc0000080-1575043694:709288..709534 | TCONS_00007958-exon-sc0000080-1575043694:709288..709534 | Clytia hemisphaerica | exon |
| TCONS_00007958-exon-sc0000080-1575043694:706129..706639 | TCONS_00007958-exon-sc0000080-1575043694:706129..706639 | Clytia hemisphaerica | exon |
| TCONS_00007958-exon-sc0000080-1510915933:709288..709534 | TCONS_00007958-exon-sc0000080-1510915933:709288..709534 | Clytia hemisphaerica | exon |
| TCONS_00007958-exon-sc0000080-1510915933:706129..706639 | TCONS_00007958-exon-sc0000080-1510915933:706129..706639 | Clytia hemisphaerica | exon |
| TCONS_00007958-exon-sc0000080-1491911889:709288..709534 | TCONS_00007958-exon-sc0000080-1491911889:709288..709534 | Clytia hemisphaerica | exon |
| TCONS_00007958-exon-sc0000080-1491911889:706129..706639 | TCONS_00007958-exon-sc0000080-1491911889:706129..706639 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000080 | supercontig | sc0000080:706129..709534 - |
Blast
BLAST of TCONS_00007958 vs. Swiss-Prot (Human)
Match: DPH3 (DPH3 homolog OS=Homo sapiens GN=DPH3 PE=1 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 4.662e-32 Identity = 56/72 (77.78%), Postives = 62/72 (86.11%), Query Frame = 2
Query: 65 MSVFHDEVEIEDFDYDEESETYYYPCPCGDRFEITREMLADGEDVATCPSCSLIIKVIYDIDDFMEGEEVEA 280
M+VFHDEVEIEDF YDE+SETY+YPCPCGD F IT+E L +GEDVATCPSCSLIIKVIYD D F+ GE V A
Sbjct: 1 MAVFHDEVEIEDFQYDEDSETYFYPCPCGDNFSITKEDLENGEDVATCPSCSLIIKVIYDKDQFVCGETVPA 72
The following BLAST results are available for this feature:
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