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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007953 ID=TCONS_00007953|Name=TCONS_00007953|organism=Clytia hemisphaerica|type=transcript|length=4155bpRun BLAST on NCBI transcript from alignment at sc0000080:671629..697523- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00007953 ID=TCONS_00007953|Name=TCONS_00007953|organism=Clytia hemisphaerica|type=transcript|length=25895bp|location=Sequence derived from alignment at sc0000080:671629..697523- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00007953 vs. Swiss-Prot (Human)
Match: FHDC1 (FH2 domain-containing protein 1 OS=Homo sapiens GN=FHDC1 PE=1 SV=2) HSP 1 Score: 221.476 bits (563), Expect = 1.347e-58 Identity = 128/371 (34.50%), Postives = 212/371 (57.14%), Query Frame = 3
Query: 1560 KMKKLQWNKIPTHVLKRNSSSVW--------NKVIEVDGVEPDYLIEEDLFKQA--XXXXXXXXXXXXXXXXISLLDPKRSMNINIFLKQFKGGPAQLIEWIRIGNATDIGGDRLKCLETLLPDSSEKETIKSFSGDRNKLGPAEKFVELMCELPSYEFRIKGLILKEDFLVNKESLQPQIEVFKGAVEDILNNETLPEILNLILRVGNFMNHGSHAGNAEAFKFNSLLKLTDTRANKPRMNLMHFIVQVAVDKKEALLEFPKSMTHLDASVRLSIDNLEKEVVTLKRSLEAAQKQLDKVSEDVQEQMGEFLGQSIIEITVLEVQCKEIRKLVAEMANYFCEEPKKFVVEEYLNMMKQFCEKLTKAKDENE 2642
+M+ W IP + R +++W + I+ +E + +ED K + + + + +EI++LD KRSMNI IFLKQFK P ++E I G + G + L+ LP+S E + +K+FSGD +KL A+ F+ + ++P+Y RI+ ++LK++FL + SL I V + A++++++ E L IL+L+L+ GN MN G +AGNA FK +SLLKL DT+ANKP MNL+HF+ Q A K LL F + + H+ + RLS++N E E+ L ++ ++ + + E Q QM +FL +I ++ LE +E++ + ++FCE+ K ++E + + FC K KA +N
Sbjct: 96 RMRSFFWKTIPEEQV-RGKTNIWTLAARQEHHYQIDTKTIEELFGQQEDTTKSSLPRRGRTLNSSFREAREEITILDAKRSMNIGIFLKQFKKSPRSIVEDIHQGKSEHYGSETLREFLKFLPESEEVKKLKAFSGDVSKLSLADSFLYGLIQVPNYSLRIEAMVLKKEFLPSCSSLYTDITVLRTAIKELMSCEELHSILHLVLQAGNIMNAGGYAGNAVGFKLSSLLKLADTKANKPGMNLLHFVAQEAQKKDTILLNFSEKLHHVQKTARLSLENTEAELHLLFVRTKSLKENIQRDGELCQ-QMEDFLQFAIEKLRELECWKQELQDEAYTLIDFFCEDKKTMKLDECFQIFRDFCTKFNKAVKDNH 464 The following BLAST results are available for this feature:
BLAST of TCONS_00007953 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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