|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007949 ID=TCONS_00007949|Name=TCONS_00007949|organism=Clytia hemisphaerica|type=transcript|length=4321bpRun BLAST on NCBI transcript from alignment at sc0000080:671629..685995- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00007949 ID=TCONS_00007949|Name=TCONS_00007949|organism=Clytia hemisphaerica|type=transcript|length=14367bp|location=Sequence derived from alignment at sc0000080:671629..685995- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00007949 vs. Swiss-Prot (Human)
Match: INF2 (Inverted formin-2 OS=Homo sapiens GN=INF2 PE=1 SV=2) HSP 1 Score: 222.631 bits (566), Expect = 1.073e-58 Identity = 120/324 (37.04%), Postives = 195/324 (60.19%), Query Frame = 3
Query: 102 WARVKNL--TEHSHATVSDFENAELNDAFVRRMLCDPDSQTYSALNQWLKVCPHEWLREFLQCGGLKYMFAGLTYMNMKGSSKFTDTVVQIEVVRGIKLVINCADGIEYLITSNDDLIHVMVLSLDTGNVMVKKQVFEMLSGVCLYSERGYQLALSALENFKTEKSQRYRFSIILNELKNAELFAYKTTLLAFINAILMSTVDFNERRQIRNEFIGLGLLDELTALRHENDEDFLTQIVVFDEQKQQDDDMMI-TGDGLDLNDHQQVFRAVFDQIANKPIANNFLRILQSLLMIDVESEYSDRVWEIIEDIVVRAVYITNEKQE 1064
WA +K + S T ++ E+A + R+L P YS L + L+ W+ +FL+ GL + L ++ +G ++ +D ++Q+ V ++ V+N GIEY++ SN + + +LDT NVMVKKQVFE+L+ +C+YS G+ L L AL+++KT SQ+YRFSI++NEL ++ Y TLL+ INA+++ D R Q+RNEFIGL LLD L LR D D L Q+ F+E K +D++ ++ G+D++ HQ+VF ++F +++ P++ L +LQ LL ++ S +WE +E +V RAV + ++ QE
Sbjct: 11 WAALKEKLGPQDSDPTEANLESA--DPELCIRLLQMPSVVNYSGLRKRLEGSDGGWMVQFLEQSGLDLLLEALARLSGRGVARISDALLQLTCVSCVRAVMNSRQGIEYIL-SNQGYVRQLSQALDTSNVMVKKQVFELLAALCIYSPEGHVLTLDALDHYKTVCSQQYRFSIVMNELSGSDNVPYVVTLLSVINAVILGPEDLRARTQLRNEFIGLQLLDVLARLRDLEDADLLIQLEAFEEAKAEDEEELLRVSGGVDMSSHQEVFASLFHKVSCSPVSAQLLSVLQGLLHLEPTLRSSQLLWEALESLVNRAVLLASDAQE 331 HSP 2 Score: 215.698 bits (548), Expect = 1.417e-56 Identity = 154/462 (33.33%), Postives = 257/462 (55.63%), Query Frame = 3
Query: 1857 PSSKMKKLQWNKIPTHVLKRNSSSVWNKVIEVDG--VEPDYLIEEDLFK----QAXXXXXXXXXXXXXXXXISLLDPKRSMNINIFLKQFKGGPAQLIEWIRIGNATDIGGDRLKCLETLLPDSSEKETIKSFSGDRNKLGPAEKFVELMCELPSYEFRIKGLILKEDFLVNKESLQPQIEVFKGAVEDILNNETLPEILNLILRVGNFMNHGSHAGNAEAFKFNSLLKLTDTRANKPRMNLMHFIVQVAVDKKEALLEFPKSMTHLDASVRLSIDNLEKEVVT-LKRSLEAAQKQLDKVSEDVQEQMGEFLGQSIIEITVLEVQCKEIRKLVAEMANYFCEEPKKFVVEEYLNMMKQFCEKLTKAKDENEQFXXXXXXXXXXXXXXXXXXXXXXXLGIKEKPKG------RRAPPPMEEKSIIDNLLDEIKNGFPLKKSQVTSPTKKEAPSTKENVDPKKA 3203
P+ +MKKL W K+P++V R +S+W + D VEPD+ E LF + ++ + KEPKEI+ LD K+S+N+NIFLKQFK ++ IR G+ T + LK L LLP+ E E +++F+ +R KL A+ F L+ +P Y+ RI+ ++L E + ++P+ ++ A E +L + LP LILR+GNF+N+GSH G+A+ FK ++LLKLT+T++ + R+ L+H +++ A LL+ P+ + + ++++ + E + LK+ LE +K V+E VQEQ E L SI L+ + I + E+A+Y CE+ ++ +E+ + MK F + +A EN+ K+Q + R+++ AEE+A +P+G R+ P EE +ID LL +I+ GF L+K+ + S ++DP +A
Sbjct: 560 PTLRMKKLNWQKLPSNV-AREHNSMWASLSSPDAEAVEPDFSSIERLFSFPAAKPKEPTMVAPRARKEPKEITFLDAKKSLNLNIFLKQFKCSNEEVAAMIRAGDTTKFDVEVLKQLLKLLPEKHEIENLRAFTEERAKLASADHFYLLLLAIPCYQLRIECMLLCEGAAAVLDMVRPKAQLVLAACESLLTSRQLPIFCQLILRIGNFLNYGSHTGDADGFKISTLLKLTETKSQQNRVTLLHHVLEEAEKSHPDLLQLPRDLEQPSQAAGINLEIIRSEASSNLKKLLETERKVSASVAE-VQEQYTERLQASISAFRALDELFEAIEQKQRELADYLCEDAQQLSLEDTFSTMKAFRDLFLRALKENKDRKEQAAKAERRKQQLAEEEA--------RRPRGEDGKPVRKGPGKQEEVCVIDALLADIRKGFQLRKT-ARGRGDTDGGSKAASMDPPRA 1010 The following BLAST results are available for this feature:
BLAST of TCONS_00007949 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.