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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007940 ID=TCONS_00007940|Name=TCONS_00007940|organism=Clytia hemisphaerica|type=transcript|length=1499bp
GTGGTTTTCATAATGGATCGTGGACGGGGATCGTTCAAGACGTTTATACG
GGAAAAGCGGACGTTGGAGTTCACGCAATGACGCAATTACACCAACGTTT
GGACTACGTAGATTACACTGAACCTATTCTTGGTTCATGGTTAGGTATCG
TTCGGCGCCGTGAAAAACCGTCGCTACCCGTCATCaattggatattctta
accAAACTTCATGTTAACTTGATCATTGCTATTCTAGTCGTGTTTGTTAT
CAACTTTGTGTTTGCTCTCGTTTGCGAAAACACCATGGCCAAGTATTTAC
GACTCAAACGTTTCCACACGAGAGACATGTTTTCTTATATCTCTGGACTG
CTTTTTCAAAGAGACCTGGGTGCTAAGTTACCAGAATTCTGGTCCAGTCG
GCTACCATGTATTTGTTACGCTATTGCCATGACGATCATCATGTCAACAT
ACACTGCTAATCTTACGGCGACGAATATTGTTTACGACGATAGCGATGAT
TTTCAAGGACTGTCTGATCCTAAGCTGACCAATCCGAGCAGCGAGTTTAA
GATCACAGTGATGGGACAAACAGCATATGAGTTGTGGGCGCGAACTAAAC
CTCTTCTTTATGAACACATGAAAGACGCGATGGTACCCAATGATTACGTC
GGTGTCAAGAACGTCCTATCAGGATCATTGGATGGTTATATTGGAGATTA
CAAATTCTTGAAATATCTCTCACAACTCCCACAATTCTGCCATAAACTAA
GACTTTACAAAGAGAAACGGAAATCCATATTCAGTGCTTTCATTGTACCG
AAGAACTCGCCCTGGAAAGAGCCATTCTCGCAGGAAATCCTGAACACTTT
TGAGACGGGCAAAATGGCGGAACTGCTAGATCGTTGGTTGTGGTACACAG
CTTGTGAACAAACGGAGAACGACGTCAGTTCTTTCACGTGGCGATATTTC
GGTGGACTTTTCGTCTTTACCGGAGCTTCTATTGGATTTGTCACTTTGGT
TTTGTGTCTGGAATTTCTGGTGAATTGTATTCGTAACGTGTCATGAACAT
TGTGTGTTCTTTATATCCATGAAAACAACGTGTGTAGCTTGTGAGCCGTC
TCTTCTACTTGTTGTTTCCCTGCTTTTCTGGAAATGTAACTTTGGTGATA
ACATACTCATCAAGTATTGCGTGTTAAAGACATATGCTAGGACATCGACA
TATATTGTTGAGATGCACATTGTTGAgcaaatcaacaaaatttttacCAT
AGAGATTAAAGACATATGGTTGGTAAACTGCCATCTTTCTCACTGGTATG
TGAGCTGAATGAATGACTATAAAAGAAATTTATGTATGAAGTCTTTATAA
CTGAGGGGACGATGATATTTAATACTCATTTTTACTATACTACGATTTgt
atttttagacatttttaaatttcgttATTGTGAAAGTAAACTTTGTGTAC
CATGAAAATCGCAGATTATCGCAATTTCATTATGTAAGCATTTTGAGAG Run BLAST on NCBI transcript from alignment at sc0000080:643230..645471- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007940 ID=TCONS_00007940|Name=TCONS_00007940|organism=Clytia hemisphaerica|type=transcript|length=2242bp|location=Sequence derived from alignment at sc0000080:643230..645471- (Clytia hemisphaerica)
GTGGTTTTCATAATGGATCGTGGACGGGGATCGTTCAAGACGTTTATACG
GGAAAAGCGGACGTTGGAGTTCACGCAATGACGCAATTACACCAACGTTT
GGACTACGTAGATTACACTGAACCTATTCTTGGTTCATGGTTAGGTATCG
TTCGGCGCCGTGAAAAACCGTCGCTACCCGTCATCAATTGGATATTCTTA
ACCAAACTTCATGTTAACTTGATCATTGCTATTCTAGTCGTGTTTGTTAT
CAACTTTGTGTTTGCTCTCGTTTGCGAAAACACCATGGCCAAGTATTTAC
GACTCAAACGTTTCCACACGAGAGACATGTTTTCTTATATCTCTGGACTG
CTTTTTCAAAGAGACCTGGGTGCTAAGTTACCAGAATTCTGGTCCAGTCG
GCTACCATGTATTTGTTACGCTATTGCCATGACGATCATCATGTCAACAT
ACACTGCTAATCTTACGGCGACGAATATTGTTTACGACGATAGCGATGAT
TTTCAAGGACTGTCTGATCCTAAGGTATAAATTGAGGTGTTTTTCAATCT
TGTTTCTTGACGTTTAAATCAACCTCTTAATTTGGGTTTTGAACTTACAT
TATTCGATAAATTTTTCCTGAAGGTTATAAGTTACTTTATAAAGATGAAG
AACTTTTGTTTCAATAATATAACTGATAAACTCTATTTTTCCCGAGATCA
ACCGCTACTCTGTGCTTGCTTTTCCCACGTTCTTGCCGGGGATTAGAAAG
TTTAATCATCCTACAGTAAAACTGAAAAACTAACAAATTCTCTCTCCCTC
TTTCTTAACTTCAGCTGACCAATCCGAGCAGCGAGTTTAAGATCACAGTG
ATGGGACAAACAGCATATGAGTTGTGGGCGCGAACTAAACCTCTTCTTTA
TGAACACATGAAAGACGCGATGGTACCCAATGATTACGTCGGTGTCAAGA
ACGTCCTATCAGGGTGAGTTGACTTTTTCAGAGAATTTTACGGGTTCTCT
GAGTAGAGGGTGTATAGATAGGATAAGAATTTCTGTTTTTGAAATATTGG
ATGGCCTGTGTGCTTTCCGCTTCTGTACAGGGAAGCTCTTCTAAGTGTAT
TTAAATACACCCCGTGTCACATACCCGGTGGGACCCCGCCCCACTGAAAG
ATTCGACCAAAATTCCGTCCCCGGAAGGAAAAAACCTGAAAATCAGTGGA
ATAAATTGCACTCCTCAACCATCCCCACCTGATTTTTAGCTGTGAATAAT
AGAATTTCTATCCACATTGTGTTTTCGATGGAAATTTTTACTGTTGGAAA
AAGTTTCACTAGGGCTGTGAGACAGGGCTGTTTAGATTGAAATTGGAACT
GTTGGGAATCGTTTGATAAAAAAATGCTGATTTGGTTTTGATTATTGTTT
TTTCGTCCTTTATCAGATCATTGGATGGTTATATTGGAGATTACAAATTC
TTGAAATATCTCTCACAACTCCCACAATTCTGCCATAAACTAAGACTTTA
CAAAGAGAAACGGAAATCCATATTCAGTGCTTTCATTGTACCGAAGAACT
CGCCCTGGAAAGAGCCATTCTCGCAGGAAATCCTGAACACTTTTGAGACG
GGCAAAATGGCGGAACTGCTAGATCGTTGGTTGTGGTACACAGCTTGTGA
ACAAACGGAGAACGACGTCAGTTCTTTCACGTGGCGATATTTCGGTGGAC
TTTTCGTCTTTACCGGAGCTTCTATTGGATTTGTCACTTTGGTTTTGTGT
CTGGAATTTCTGGTGAATTGTATTCGTAACGTGTCATGAACATTGTGTGT
TCTTTATATCCATGAAAACAACGTGTGTAGCTTGTGAGCCGTCTCTTCTA
CTTGTTGTTTCCCTGCTTTTCTGGAAATGTAACTTTGGTGATAACATACT
CATCAAGTATTGCGTGTTAAAGACATATGCTAGGACATCGACATATATTG
TTGAGATGCACATTGTTGAGCAAATCAACAAAATTTTTACCATAGAGATT
AAAGACATATGGTTGGTAAACTGCCATCTTTCTCACTGGTATGTGAGCTG
AATGAATGACTATAAAAGAAATTTATGTATGAAGTCTTTATAACTGAGGG
GACGATGATATTTAATACTCATTTTTACTATACTACGATTTGTATTTTTA
GACATTTTTAAATTTCGTTATTGTGAAAGTAAACTTTGTGTACCATGAAA
ATCGCAGATTATCGCAATTTCATTATGTAAGCATTTTGAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007940-exon-sc0000080-1575043694:644948..645471 | TCONS_00007940-exon-sc0000080-1575043694:644948..645471 | Clytia hemisphaerica | exon |
| TCONS_00007940-exon-sc0000080-1575043694:644509..644657 | TCONS_00007940-exon-sc0000080-1575043694:644509..644657 | Clytia hemisphaerica | exon |
| TCONS_00007940-exon-sc0000080-1575043694:643230..644055 | TCONS_00007940-exon-sc0000080-1575043694:643230..644055 | Clytia hemisphaerica | exon |
| TCONS_00007940-exon-sc0000080-1510915933:644948..645471 | TCONS_00007940-exon-sc0000080-1510915933:644948..645471 | Clytia hemisphaerica | exon |
| TCONS_00007940-exon-sc0000080-1510915933:644509..644657 | TCONS_00007940-exon-sc0000080-1510915933:644509..644657 | Clytia hemisphaerica | exon |
| TCONS_00007940-exon-sc0000080-1510915933:643230..644055 | TCONS_00007940-exon-sc0000080-1510915933:643230..644055 | Clytia hemisphaerica | exon |
| TCONS_00007940-exon-sc0000080-1491911889:644948..645471 | TCONS_00007940-exon-sc0000080-1491911889:644948..645471 | Clytia hemisphaerica | exon |
| TCONS_00007940-exon-sc0000080-1491911889:644509..644657 | TCONS_00007940-exon-sc0000080-1491911889:644509..644657 | Clytia hemisphaerica | exon |
| TCONS_00007940-exon-sc0000080-1491911889:643230..644055 | TCONS_00007940-exon-sc0000080-1491911889:643230..644055 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000080 | supercontig | sc0000080:643230..645471 - |
Blast
BLAST of TCONS_00007940 vs. Swiss-Prot (Human)
Match: NMD3A (Glutamate receptor ionotropic, NMDA 3A OS=Homo sapiens GN=GRIN3A PE=1 SV=2) HSP 1 Score: 117.087 bits (292), Expect = 1.512e-27 Identity = 99/349 (28.37%), Postives = 152/349 (43.55%), Query Frame = 3
Query: 12 NGSWTGIVQDVYTGKADVGVHAMTQLHQRLDYVDYTEPILGSWLGIVRRREKPSLPVINWIFLTKLHVNLIIAILVVFVINFVFALVCENTMAKYLRLKRFHTRDMFSYISGL------LFQRDLGAKLPEFWSSRLPCICYAIAMTIIMSTYTANLTATNIVYDDSDDFQGLSDPKLTNPSSEFKITVMGQTAYELWARTK-PLLYEHMKDAMVPNDYVGVKNVLSG--SLDGYIGDYKFLKYLSQLPQFCHKLRLYKEKRKSIFSAFIVPKNSPWKEPFSQEILNTFETGKMAELLDRWLWYTACEQTENDVS---SFTWRYFGGLFVFTGASIGFVTLVLCLEFLV 1022
NG WTG+V D+ G A + V + + R +D+T P + LGI+ R + P+ F+ LH + + I V I VF + E L K + +FS+ S L LF R + K P+ W+ R +AI +STYTANL A + ++ G+ DPKL +PS F+ + +++ E + R P ++E+M+ VP GV+ + + LD +I D L Y + C L + K + +P NSP S+ I G M L D+W C + V+ ++F GLFV G L E +V
Sbjct: 610 NGHWTGLVGDLLRGTAHMAVTSFSINTARSQVIDFTSPFFSTSLGILVRTRDTAAPI--GAFMWPLHWTMWLGIFVALHITAVFLTLYEWKSPFGLTPKGRNRSKVFSFSSALNICYALLFGRTVAIKPPKCWTGRFLMNLWAIFCMFCLSTYTANLAAVMVGEKIYEELSGIHDPKLHHPSQGFRFGTVRESSAEDYVRQSFPEMHEYMRRYNVPATPDGVEYLKNDPEKLDAFIMDKALLDYEVSIDADCKLLTVGKPFAIEGY-GIGLPPNSPLTANISELISQYKSHGFMDMLHDKWYRVVPCGKRSFAVTETLQMGIKHFSGLFVLLCIGFGLSILTTIGEHIV 955
The following BLAST results are available for this feature:
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