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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007923 ID=TCONS_00007923|Name=TCONS_00007923|organism=Clytia hemisphaerica|type=transcript|length=3373bp
CAGTCCCAGCACCAGCTACAGAAGAAGCAGCTCCTGAGCCTGCTACTGAA
GAAGCAGTTCTAGCACCAGATACAGAAGAAGCAGCTCCTGAGCCTGCTAT
TGAAGAAGTGGCACCAGCACCAGCTACAGAAGAAGCAGCACCAGCACCAG
CTACAGAAGAAGCAGCCCCAGCACCAGCTACAGAAGAAGCAGGTCCTGGG
CCTGATACTGAAGAAGCAGCTCCTGAACCTGCTAAAGAAGAAGCAGCTCC
TGAGCCTGCTACTAAAGAAGTGGCACCAGCACCAGCTACTGAAGAGGCAG
CTCCTGGGCCTGCTACTGAAGAAGTGGCACCAGCACCAGCTACAGAAGAA
GTGGCTCCAGCACCAGCTACTGAAGAAGCAGCTCCTGAGCCTGCTACTGA
AGAAGTGGCACCAGCACCAGCTACAGAAGAAGCAGCTCCTGGGCCTGATA
CTGAAGAAGCAGCACCTGAGCCTGCTACAGAAGAAGCAGCTCCTGAGCCT
GCTACTGAAGAAGTGGCACCAGCACCAGCTACAGAAGAAGCAGCTCCTGG
GCCTGATACTGAAGAAGCAGCACCTGAGCCTGCTACAGAAGAAGCAGCTC
CTGAGCTTGCTACTGAAGAAGTGGCACCAGCACCAGCTACAGAAGAAGCA
GCTCCTAGGCCTGATACTGAAGAAGCAGCACCTGAGCCTGCTACAGAAGA
AGCAGCTCCTGAGCCTGCTTCTGGAGAAGTGGCACCAGCACCAGCTACAG
AAGAAGCAGCTTCTGGGCCTGATACTGAAGAAGCAGCACCTGAGCCTGCT
ACAGAAGAAGCAGCTCCTGAGCCTGCTACTGAAGAAGTGGCACCAGCACC
AGCTACAGAAGAAGCAGCTTCTGGGCCTGATACTGAAGAAGCAGCACCTG
AGCCTGCTACAGAAGAAGCAGCTCCTGAGCCTGCTACTGAAGAAGTGGCA
CCAGCACCAGCTACAGAAGAAGCAGCTCCTAGGCCTGCTACTGAAGAAGC
AGCACCTGAGCCTGCTACAGAAGAAGCAGCACCTGAGCCTGCTACAGAAG
AAGCAGCTCCTGAGCCTGCTACTGAAGAAGTGGCACCAGCACCAGCTACA
GAAGAAGCAGCTCCTGGGCCTGATACTGAAGAAGCAGCACCTGAGCCTGC
TACAGAAGAAGCAGTTCTTAAGCCTGCTTCTGAAGAAGCGGCCCCAGTAC
CAGCTACTGAAGAGGCAGCCCCAGCACCAGCAACAGAAGAAGCAGCTCCA
GCACCAGCTACAGAAGAAGTAGCACCAACACCAGCAACAGAAGAAGCAGC
CCCAGCACCAGCTTCAGAAGAAGCAGCTCCTGAGCCTGCTACTGAAGAAG
CAGCATCTGAGCCTGCTACTGAAGAAGCAGCTCCTGAGCCTGCTACTAAA
GAAGTGGCGCCAGCACCAGCTACAGAAGAAGCGGCTCCAGTACCAGCTAC
TGAAGAGGCAGCCCCAGCACCAGCAACAGAAGAAGCAACTCCCGCACCAG
CTACAGAAGAAGCAGCTACAGAAGAAGCAGCTACAGAAGAAGCAGCACCA
GCACCAGCACCAGCTGCAGAAGAAGCAGCACCTGAGCCTGCTGTAGAAGA
AGCAGCTCCAGCACCAGCTACAGAAGAAGCAGCTCCTGAGCCTGCTACTG
AAGAAGTGTCACCAGCACCAGCTGCAGAAGAAGCAGCTCCAGCACCAACA
ACAGAAGAAGCAGCCCCAGCACCAGCTAGAGAAGAAGCAGCTCCTGAGCC
TGCTACTGAAGAAGTAGCACCAGTACCAGCTACAGAAGAAGCAGCTACAG
AAGAAGCAGCTACAGAAGAAGCAGCTACAGAAGAAGCAGCTACAGAAGAA
GCAGCACCAGTACCAGCAACAGAAGAAGCAGCTCCAGCACCAGCAACAGA
AGAAGCAGCCCCAGCACCAGCTACAGAAGAAGCAGCTCCTGAGCCTGCTA
CTGAAGAAGCAACCCCAGCACCAGCTACAGAAGAAGCAGCCCCAGCACCA
GCTACAGAAGAAGCAGCTACAGAAGAAGCAGCTCCTGAGCCTGCTACTGA
AGAAGTAGCACCAGTACCAGCTACTGAAGAGGCAACTCCAACACTAGCTG
CAGAAGAAGTCGCTTCAGAAGAAGTCCCATGTGAATTAGTCGAAACGAAA
ATTCAAACCCATACAGCAGTAGAAGAAGCGGTAGAAGAGTTTGTGGAATC
TTGCAAAGTGGTTGCCGTAGAAAATGCACCAACAAGTGATGTTATTGACG
AAGAATCGGTAGAGATGGACAAAGACCAATCAGAGGATATTGAGGAGATG
AAACAGAAAAGCGACGAAATAGAGAAAGAATATTCACATCTGAAAGGTAG
ACTCGAGAAGATCGAGAAAGAatattctgaattgaaagacaaaaaagata
aaattaaaCAAGAGAAGTCCGAACTAAAGGACCATAATGAACAATTAGAG
GCTAAAATAAAAGCCTTAGAAATAATGATGTCAGGAACTTTAGATGCGAA
TAATAACCCAGACGAAACAAGTGCCCAATATGACACATTGTCTAACACAT
GTGCCGAACTTGAGGGTGagataagaaaattaaaattgagGGTGTTAGTG
CGAGATACGGAGGTCGAACGATTGAAGGGATATTTAGAGGATGTTTTTAA
GAAAACGAAGAAAGGGAAGTCAGGTCATCGACGAACGAAACGTATCTTGT
ATGATGAGAAGAAACAACACCCTGGTGCCATGATGTTGAACAATAAACGA
AAGTCAGCATCGATGAGTAATATTCTTGATGTTTGAGAGATGGTAGAGAT
AATTCATTCTTGACGTCAATGTTTTTCCATTAGGGAAAAATGTCATTATC
AAATATTGCAAAATTTAAATACTTGATTGATTTCAATCGAAATGTATATT
AATTTTAATCATTAATTTGTATTTAAAATCAGGCTAGGAATAGACTACTA
ACTGAGGCGTTTTTTTCATGACCAATGATTTCTTATCAGTTCTTGACTTA
GAGGGAGCTGGcgaaaaaacttttcgaaagCGGATCTCACATACTTTGAA
CCCTCCTATTTCCGCCGCTACGATGGCTAGAGAAAAGGATTACAATGAAA
TTGAACCGATAAATTGTTGAGTGATTTagctaaaaaagataaaagggtCT
TTTCTTTTTGAGGACATGAGAATTTGAATTTGTGAAAGcaaattttagtg
aattttAGTTAATATCGCAAAAATCAGACGACGGTCTATTATTAGTTAAG
TGACCACTTTTGTATAAATTATGCTAAATATTATGAAATTATTGTGTATT
AAGCTAACTTTTGTACTAggtaaagtaaaaatatttaaaaaggaCTGGTT
TGAAGAccagaaaaagtaaaaat Run BLAST on NCBI transcript from alignment at sc0000080:515742..519299- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007923 ID=TCONS_00007923|Name=TCONS_00007923|organism=Clytia hemisphaerica|type=transcript|length=3558bp|location=Sequence derived from alignment at sc0000080:515742..519299- (Clytia hemisphaerica)
CAGTCCCAGCACCAGCTACAGAAGAAGCAGCTCCTGAGCCTGCTACTGAA
GAAGCAGTTCTAGCACCAGATACAGAAGAAGCAGCTCCTGAGCCTGCTAT
TGAAGAAGTGGCACCAGCACCAGCTACAGAAGAAGCAGCACCAGCACCAG
CTACAGAAGAAGCAGCCCCAGCACCAGCTACAGAAGAAGCAGGTCCTGGG
CCTGATACTGAAGAAGCAGCTCCTGAACCTGCTAAAGAAGAAGCAGCTCC
TGAGCCTGCTACTAAAGAAGTGGCACCAGCACCAGCTACTGAAGAGGCAG
CTCCTGGGCCTGCTACTGAAGAAGTGGCACCAGCACCAGCTACAGAAGAA
GTGGCTCCAGCACCAGCTACTGAAGAAGCAGCTCCTGAGCCTGCTACTGA
AGAAGTGGCACCAGCACCAGCTACAGAAGAAGCAGCTCCTGGGCCTGATA
CTGAAGAAGCAGCACCTGAGCCTGCTACAGAAGAAGCAGCTCCTGAGCCT
GCTACTGAAGAAGTGGCACCAGCACCAGCTACAGAAGAAGCAGCTCCTGG
GCCTGATACTGAAGAAGCAGCACCTGAGCCTGCTACAGAAGAAGCAGCTC
CTGAGCTTGCTACTGAAGAAGTGGCACCAGCACCAGCTACAGAAGAAGCA
GCTCCTAGGCCTGATACTGAAGAAGCAGCACCTGAGCCTGCTACAGAAGA
AGCAGCTCCTGAGCCTGCTTCTGGAGAAGTGGCACCAGCACCAGCTACAG
AAGAAGCAGCTTCTGGGCCTGATACTGAAGAAGCAGCACCTGAGCCTGCT
ACAGAAGAAGCAGCTCCTGAGCCTGCTACTGAAGAAGTGGCACCAGCACC
AGCTACAGAAGAAGCAGCTTCTGGGCCTGATACTGAAGAAGCAGCACCTG
AGCCTGCTACAGAAGAAGCAGCTCCTGAGCCTGCTACTGAAGAAGTGGCA
CCAGCACCAGCTACAGAAGAAGCAGCTCCTAGGCCTGCTACTGAAGAAGC
AGCACCTGAGCCTGCTACAGAAGAAGCAGCACCTGAGCCTGCTACAGAAG
AAGCAGCTCCTGAGCCTGCTACTGAAGAAGTGGCACCAGCACCAGCTACA
GAAGAAGCAGCTCCTGGGCCTGATACTGAAGAAGCAGCACCTGAGCCTGC
TACAGAAGAAGCAGTTCTTAAGCCTGCTTCTGAAGAAGCGGCCCCAGTAC
CAGCTACTGAAGAGGCAGCCCCAGCACCAGCAACAGAAGAAGCAGCTCCA
GCACCAGCTACAGAAGAAGTAGCACCAACACCAGCAACAGAAGAAGCAGC
CCCAGCACCAGCTTCAGAAGAAGCAGCTCCTGAGCCTGCTACTGAAGAAG
CAGCATCTGAGCCTGCTACTGAAGAAGCAGCTCCTGAGCCTGCTACTAAA
GAAGTGGCGCCAGCACCAGCTACAGAAGAAGCGGCTCCAGTACCAGCTAC
TGAAGAGGCAGCCCCAGCACCAGCAACAGAAGAAGCAACTCCCGCACCAG
CTACAGAAGAAGCAGCTACAGAAGAAGCAGCTACAGAAGAAGCAGCACCA
GCACCAGCACCAGCTGCAGAAGAAGCAGCACCTGAGCCTGCTGTAGAAGA
AGCAGCTCCAGCACCAGCTACAGAAGAAGCAGCTCCTGAGCCTGCTACTG
AAGAAGTGTCACCAGCACCAGCTGCAGAAGAAGCAGCTCCAGCACCAACA
ACAGAAGAAGCAGCCCCAGCACCAGCTAGAGAAGAAGCAGCTCCTGAGCC
TGCTACTGAAGAAGTAGCACCAGTACCAGCTACAGAAGAAGCAGCTACAG
AAGAAGCAGCTACAGAAGAAGCAGCTACAGAAGAAGCAGCTACAGAAGAA
GCAGCACCAGTACCAGCAACAGAAGAAGCAGCTCCAGCACCAGCAACAGA
AGAAGCAGCCCCAGCACCAGCTACAGAAGAAGCAGCTCCTGAGCCTGCTA
CTGAAGAAGCAACCCCAGCACCAGCTACAGAAGAAGCAGCCCCAGCACCA
GCTACAGAAGAAGCAGCTACAGAAGAAGCAGCTCCTGAGCCTGCTACTGA
AGAAGTAGCACCAGTACCAGCTACTGAAGAGGCAACTCCAACACTAGCTG
CAGAAGAAGTCGCTTCAGAAGAAGTCCCATGTGAATTAGTCGAAACGAAA
ATTCAAACCCATACAGCAGTAGAAGAAGCGGTAGAAGAGTTTGTGGAATC
TTGCAAAGTGGTTGCCGTAGAAAATGCACCAACAAGTGATGTTATTGACG
AAGGTGAGTCATAAGGGACACTTTATTCGTTTCCATTGTTTAATTTGACT
TGTCTAATCGAATTTTGATTACCAATATGGGAAAGAGCTGTTCTCTTGTT
CTTTCATTTTTCATATCTTAAAAATCTGACCAATCTTTCTTTTTTACCCT
GTATAAGAGTAACTTTGTACAACGATACTTTCCTTTAGAATCGGTAGAGA
TGGACAAAGACCAATCAGAGGATATTGAGGAGATGAAACAGAAAAGCGAC
GAAATAGAGAAAGAATATTCACATCTGAAAGGTAGACTCGAGAAGATCGA
GAAAGAATATTCTGAATTGAAAGACAAAAAAGATAAAATTAAACAAGAGA
AGTCCGAACTAAAGGACCATAATGAACAATTAGAGGCTAAAATAAAAGCC
TTAGAAATAATGATGTCAGGAACTTTAGATGCGAATAATAACCCAGACGA
AACAAGTGCCCAATATGACACATTGTCTAACACATGTGCCGAACTTGAGG
GTGAGATAAGAAAATTAAAATTGAGGGTGTTAGTGCGAGATACGGAGGTC
GAACGATTGAAGGGATATTTAGAGGATGTTTTTAAGAAAACGAAGAAAGG
GAAGTCAGGTCATCGACGAACGAAACGTATCTTGTATGATGAGAAGAAAC
AACACCCTGGTGCCATGATGTTGAACAATAAACGAAAGTCAGCATCGATG
AGTAATATTCTTGATGTTTGAGAGATGGTAGAGATAATTCATTCTTGACG
TCAATGTTTTTCCATTAGGGAAAAATGTCATTATCAAATATTGCAAAATT
TAAATACTTGATTGATTTCAATCGAAATGTATATTAATTTTAATCATTAA
TTTGTATTTAAAATCAGGCTAGGAATAGACTACTAACTGAGGCGTTTTTT
TCATGACCAATGATTTCTTATCAGTTCTTGACTTAGAGGGAGCTGGCGAA
AAAACTTTTCGAAAGCGGATCTCACATACTTTGAACCCTCCTATTTCCGC
CGCTACGATGGCTAGAGAAAAGGATTACAATGAAATTGAACCGATAAATT
GTTGAGTGATTTAGCTAAAAAAGATAAAAGGGTCTTTTCTTTTTGAGGAC
ATGAGAATTTGAATTTGTGAAAGCAAATTTTAGTGAATTTTAGTTAATAT
CGCAAAAATCAGACGACGGTCTATTATTAGTTAAGTGACCACTTTTGTAT
AAATTATGCTAAATATTATGAAATTATTGTGTATTAAGCTAACTTTTGTA
CTAGGTAAAGTAAAAATATTTAAAAAGGACTGGTTTGAAGACCAGAAAAA
GTAAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007923-exon-sc0000080-1575043694:517047..519299 | TCONS_00007923-exon-sc0000080-1575043694:517047..519299 | Clytia hemisphaerica | exon |
| TCONS_00007923-exon-sc0000080-1575043694:515742..516861 | TCONS_00007923-exon-sc0000080-1575043694:515742..516861 | Clytia hemisphaerica | exon |
| TCONS_00007923-exon-sc0000080-1510915933:517047..519299 | TCONS_00007923-exon-sc0000080-1510915933:517047..519299 | Clytia hemisphaerica | exon |
| TCONS_00007923-exon-sc0000080-1510915933:515742..516861 | TCONS_00007923-exon-sc0000080-1510915933:515742..516861 | Clytia hemisphaerica | exon |
| TCONS_00007923-exon-sc0000080-1491911889:517047..519299 | TCONS_00007923-exon-sc0000080-1491911889:517047..519299 | Clytia hemisphaerica | exon |
| TCONS_00007923-exon-sc0000080-1491911889:515742..516861 | TCONS_00007923-exon-sc0000080-1491911889:515742..516861 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000080 | supercontig | sc0000080:515742..519299 - |
Blast
The following BLAST results are available for this feature:
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