TCONS_00007922 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007922
Unique NameTCONS_00007922
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2968

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007922 ID=TCONS_00007922|Name=TCONS_00007922|organism=Clytia hemisphaerica|type=transcript|length=2968bp
CAGTCCCAGCACCAGCTACAGAAGAAGCAGCTCCTGAGCCTGCTACTGAA
GAAGCAGTTCTAGCACCAGATACAGAAGAAGCAGCTCCTGAGCCTGCTAT
TGAAGAAGTGGCACCAGCACCAGCTACAGAAGAAGCAGCACCAGCACCAG
CTACAGAAGAAGCAGCCCCAGCACCAGCTACAGAAGAAGCAGCTCCTGAG
CTTGCTACTGAAGAAGTGGCACCAGCACCAGCTACAGAAGAAGCAGCTCC
TAGGCCTGATACTGAAGAAGCAGCACCTGAGCCTGCTACAGAAGAAGCAG
CTCCTGAGCCTGCTTCTGGAGAAGTGGCACCAGCACCAGCTACAGAAGAA
GCAGCTTCTGGGCCTGATACTGAAGAAGCAGCACCTGAGCCTGCTACAGA
AGAAGCAGCTCCTGAGCCTGCTACTGAAGAAGTGGCACCAGCACCAGCTA
CAGAAGAAGCAGCTTCTGGGCCTGATACTGAAGAAGCAGCACCTGAGCCT
GCTACAGAAGAAGCAGCTCCTGAGCCTGCTACTGAAGAAGTGGCACCAGC
ACCAGCTACAGAAGAAGCAGCTCCTAGGCCTGCTACTGAAGAAGCAGCAC
CTGAGCCTGCTACAGAAGAAGCAGCACCTGAGCCTGCTACAGAAGAAGCA
GCTCCTGAGCCTGCTACTGAAGAAGTGGCACCAGCACCAGCTACAGAAGA
AGCAGCTCCTGGGCCTGATACTGAAGAAGCAGCACCTGAGCCTGCTACAG
AAGAAGCAGTTCTTAAGCCTGCTTCTGAAGAAGCGGCCCCAGTACCAGCT
ACTGAAGAGGCAGCCCCAGCACCAGCAACAGAAGAAGCAGCTCCAGCACC
AGCTACAGAAGAAGTAGCACCAACACCAGCAACAGAAGAAGCAGCCCCAG
CACCAGCTTCAGAAGAAGCAGCTCCTGAGCCTGCTACTGAAGAAGCAGCA
TCTGAGCCTGCTACTGAAGAAGCAGCTCCTGAGCCTGCTACTAAAGAAGT
GGCGCCAGCACCAGCTACAGAAGAAGCGGCTCCAGTACCAGCTACTGAAG
AGGCAGCCCCAGCACCAGCAACAGAAGAAGCAACTCCCGCACCAGCTACA
GAAGAAGCAGCTACAGAAGAAGCAGCTACAGAAGAAGCAGCACCAGCACC
AGCACCAGCTGCAGAAGAAGCAGCACCTGAGCCTGCTGTAGAAGAAGCAG
CTCCAGCACCAGCTACAGAAGAAGCAGCTCCTGAGCCTGCTACTGAAGAA
GTGTCACCAGCACCAGCTGCAGAAGAAGCAGCTCCAGCACCAACAACAGA
AGAAGCAGCCCCAGCACCAGCTAGAGAAGAAGCAGCTCCTGAGCCTGCTA
CTGAAGAAGTAGCACCAGTACCAGCTACAGAAGAAGCAGCTACAGAAGAA
GCAGCTACAGAAGAAGCAGCTACAGAAGAAGCAGCTACAGAAGAAGCAGC
ACCAGTACCAGCAACAGAAGAAGCAGCTCCAGCACCAGCAACAGAAGAAG
CAGCCCCAGCACCAGCTACAGAAGAAGCAGCTCCTGAGCCTGCTACTGAA
GAAGCAACCCCAGCACCAGCTACAGAAGAAGCAGCCCCAGCACCAGCTAC
AGAAGAAGCAGCTACAGAAGAAGCAGCTCCTGAGCCTGCTACTGAAGAAG
TAGCACCAGTACCAGCTACTGAAGAGGCAACTCCAACACTAGCTGCAGAA
GAAGTCGCTTCAGAAGAAGTCCCATGTGAATTAGTCGAAACGAAAATTCA
AACCCATACAGCAGTAGAAGAAGCGGTAGAAGAGTTTGTGGAATCTTGCA
AAGTGGTTGCCGTAGAAAATGCACCAACAAGTGATGTTATTGACGAAGAA
TCGGTAGAGATGGACAAAGACCAATCAGAGGATATTGAGGAGATGAAACA
GAAAAGCGACGAAATAGAGAAAGAATATTCACATCTGAAAGGTAGACTCG
AGAAGATCGAGAAAGAatattctgaattgaaagacaaaaaagataaaatt
aaaCAAGAGAAGTCCGAACTAAAGGACCATAATGAACAATTAGAGGCTAA
AATAAAAGCCTTAGAAATAATGATGTCAGGAACTTTAGATGCGAATAATA
ACCCAGACGAAACAAGTGCCCAATATGACACATTGTCTAACACATGTGCC
GAACTTGAGGGTGagataagaaaattaaaattgagGGTGTTAGTGCGAGA
TACGGAGGTCGAACGATTGAAGGGATATTTAGAGGATGTTTTTAAGAAAA
CGAAGAAAGGGAAGTCAGGTCATCGACGAACGAAACGTATCTTGTATGAT
GAGAAGAAACAACACCCTGGTGCCATGATGTTGAACAATAAACGAAAGTC
AGCATCGATGAGTAATATTCTTGATGTTTGAGAGATGGTAGAGATAATTC
ATTCTTGACGTCAATGTTTTTCCATTAGGGAAAAATGTCATTATCAAATA
TTGCAAAATTTAAATACTTGATTGATTTCAATCGAAATGTATATTAATTT
TAATCATTAATTTGTATTTAAAATCAGGCTAGGAATAGACTACTAACTGA
GGCGTTTTTTTCATGACCAATGATTTCTTATCAGTTCTTGACTTAGAGGG
AGCTGGcgaaaaaacttttcgaaagCGGATCTCACATACTTTGAACCCTC
CTATTTCCGCCGCTACGATGGCTAGAGAAAAGGATTACAATGAAATTGAA
CCGATAAATTGTTGAGTGATTTagctaaaaaagataaaagggtCTTTTCT
TTTTGAGGACATGAGAATTTGAATTTGTGAAAGcaaattttagtgaattt
tAGTTAATATCGCAAAAATCAGACGACGGTCTATTATTAGTTAAGTGACC
ACTTTTGTATAAATTATGCTAAATATTATGAAATTATTGTGTATTAAGCT
AACTTTTGTACTAggtaaagtaaaaatatttaaaaaggaCTGGTTTGAAG
Accagaaaaagtaaaaat
Run BLAST on NCBI

transcript from alignment at sc0000080:515742..519299-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007922 ID=TCONS_00007922|Name=TCONS_00007922|organism=Clytia hemisphaerica|type=transcript|length=3558bp|location=Sequence derived from alignment at sc0000080:515742..519299- (Clytia hemisphaerica)
CAGTCCCAGCACCAGCTACAGAAGAAGCAGCTCCTGAGCCTGCTACTGAA
GAAGCAGTTCTAGCACCAGATACAGAAGAAGCAGCTCCTGAGCCTGCTAT
TGAAGAAGTGGCACCAGCACCAGCTACAGAAGAAGCAGCACCAGCACCAG
CTACAGAAGAAGCAGCCCCAGCACCAGCTACAGAAGAAGCAGGTCCTGGG
CCTGATACTGAAGAAGCAGCTCCTGAACCTGCTAAAGAAGAAGCAGCTCC
TGAGCCTGCTACTAAAGAAGTGGCACCAGCACCAGCTACTGAAGAGGCAG
CTCCTGGGCCTGCTACTGAAGAAGTGGCACCAGCACCAGCTACAGAAGAA
GTGGCTCCAGCACCAGCTACTGAAGAAGCAGCTCCTGAGCCTGCTACTGA
AGAAGTGGCACCAGCACCAGCTACAGAAGAAGCAGCTCCTGGGCCTGATA
CTGAAGAAGCAGCACCTGAGCCTGCTACAGAAGAAGCAGCTCCTGAGCCT
GCTACTGAAGAAGTGGCACCAGCACCAGCTACAGAAGAAGCAGCTCCTGG
GCCTGATACTGAAGAAGCAGCACCTGAGCCTGCTACAGAAGAAGCAGCTC
CTGAGCTTGCTACTGAAGAAGTGGCACCAGCACCAGCTACAGAAGAAGCA
GCTCCTAGGCCTGATACTGAAGAAGCAGCACCTGAGCCTGCTACAGAAGA
AGCAGCTCCTGAGCCTGCTTCTGGAGAAGTGGCACCAGCACCAGCTACAG
AAGAAGCAGCTTCTGGGCCTGATACTGAAGAAGCAGCACCTGAGCCTGCT
ACAGAAGAAGCAGCTCCTGAGCCTGCTACTGAAGAAGTGGCACCAGCACC
AGCTACAGAAGAAGCAGCTTCTGGGCCTGATACTGAAGAAGCAGCACCTG
AGCCTGCTACAGAAGAAGCAGCTCCTGAGCCTGCTACTGAAGAAGTGGCA
CCAGCACCAGCTACAGAAGAAGCAGCTCCTAGGCCTGCTACTGAAGAAGC
AGCACCTGAGCCTGCTACAGAAGAAGCAGCACCTGAGCCTGCTACAGAAG
AAGCAGCTCCTGAGCCTGCTACTGAAGAAGTGGCACCAGCACCAGCTACA
GAAGAAGCAGCTCCTGGGCCTGATACTGAAGAAGCAGCACCTGAGCCTGC
TACAGAAGAAGCAGTTCTTAAGCCTGCTTCTGAAGAAGCGGCCCCAGTAC
CAGCTACTGAAGAGGCAGCCCCAGCACCAGCAACAGAAGAAGCAGCTCCA
GCACCAGCTACAGAAGAAGTAGCACCAACACCAGCAACAGAAGAAGCAGC
CCCAGCACCAGCTTCAGAAGAAGCAGCTCCTGAGCCTGCTACTGAAGAAG
CAGCATCTGAGCCTGCTACTGAAGAAGCAGCTCCTGAGCCTGCTACTAAA
GAAGTGGCGCCAGCACCAGCTACAGAAGAAGCGGCTCCAGTACCAGCTAC
TGAAGAGGCAGCCCCAGCACCAGCAACAGAAGAAGCAACTCCCGCACCAG
CTACAGAAGAAGCAGCTACAGAAGAAGCAGCTACAGAAGAAGCAGCACCA
GCACCAGCACCAGCTGCAGAAGAAGCAGCACCTGAGCCTGCTGTAGAAGA
AGCAGCTCCAGCACCAGCTACAGAAGAAGCAGCTCCTGAGCCTGCTACTG
AAGAAGTGTCACCAGCACCAGCTGCAGAAGAAGCAGCTCCAGCACCAACA
ACAGAAGAAGCAGCCCCAGCACCAGCTAGAGAAGAAGCAGCTCCTGAGCC
TGCTACTGAAGAAGTAGCACCAGTACCAGCTACAGAAGAAGCAGCTACAG
AAGAAGCAGCTACAGAAGAAGCAGCTACAGAAGAAGCAGCTACAGAAGAA
GCAGCACCAGTACCAGCAACAGAAGAAGCAGCTCCAGCACCAGCAACAGA
AGAAGCAGCCCCAGCACCAGCTACAGAAGAAGCAGCTCCTGAGCCTGCTA
CTGAAGAAGCAACCCCAGCACCAGCTACAGAAGAAGCAGCCCCAGCACCA
GCTACAGAAGAAGCAGCTACAGAAGAAGCAGCTCCTGAGCCTGCTACTGA
AGAAGTAGCACCAGTACCAGCTACTGAAGAGGCAACTCCAACACTAGCTG
CAGAAGAAGTCGCTTCAGAAGAAGTCCCATGTGAATTAGTCGAAACGAAA
ATTCAAACCCATACAGCAGTAGAAGAAGCGGTAGAAGAGTTTGTGGAATC
TTGCAAAGTGGTTGCCGTAGAAAATGCACCAACAAGTGATGTTATTGACG
AAGGTGAGTCATAAGGGACACTTTATTCGTTTCCATTGTTTAATTTGACT
TGTCTAATCGAATTTTGATTACCAATATGGGAAAGAGCTGTTCTCTTGTT
CTTTCATTTTTCATATCTTAAAAATCTGACCAATCTTTCTTTTTTACCCT
GTATAAGAGTAACTTTGTACAACGATACTTTCCTTTAGAATCGGTAGAGA
TGGACAAAGACCAATCAGAGGATATTGAGGAGATGAAACAGAAAAGCGAC
GAAATAGAGAAAGAATATTCACATCTGAAAGGTAGACTCGAGAAGATCGA
GAAAGAATATTCTGAATTGAAAGACAAAAAAGATAAAATTAAACAAGAGA
AGTCCGAACTAAAGGACCATAATGAACAATTAGAGGCTAAAATAAAAGCC
TTAGAAATAATGATGTCAGGAACTTTAGATGCGAATAATAACCCAGACGA
AACAAGTGCCCAATATGACACATTGTCTAACACATGTGCCGAACTTGAGG
GTGAGATAAGAAAATTAAAATTGAGGGTGTTAGTGCGAGATACGGAGGTC
GAACGATTGAAGGGATATTTAGAGGATGTTTTTAAGAAAACGAAGAAAGG
GAAGTCAGGTCATCGACGAACGAAACGTATCTTGTATGATGAGAAGAAAC
AACACCCTGGTGCCATGATGTTGAACAATAAACGAAAGTCAGCATCGATG
AGTAATATTCTTGATGTTTGAGAGATGGTAGAGATAATTCATTCTTGACG
TCAATGTTTTTCCATTAGGGAAAAATGTCATTATCAAATATTGCAAAATT
TAAATACTTGATTGATTTCAATCGAAATGTATATTAATTTTAATCATTAA
TTTGTATTTAAAATCAGGCTAGGAATAGACTACTAACTGAGGCGTTTTTT
TCATGACCAATGATTTCTTATCAGTTCTTGACTTAGAGGGAGCTGGCGAA
AAAACTTTTCGAAAGCGGATCTCACATACTTTGAACCCTCCTATTTCCGC
CGCTACGATGGCTAGAGAAAAGGATTACAATGAAATTGAACCGATAAATT
GTTGAGTGATTTAGCTAAAAAAGATAAAAGGGTCTTTTCTTTTTGAGGAC
ATGAGAATTTGAATTTGTGAAAGCAAATTTTAGTGAATTTTAGTTAATAT
CGCAAAAATCAGACGACGGTCTATTATTAGTTAAGTGACCACTTTTGTAT
AAATTATGCTAAATATTATGAAATTATTGTGTATTAAGCTAACTTTTGTA
CTAGGTAAAGTAAAAATATTTAAAAAGGACTGGTTTGAAGACCAGAAAAA
GTAAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004472XLOC_004472Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007922-exon-sc0000080-1575043694:519108..519299TCONS_00007922-exon-sc0000080-1575043694:519108..519299Clytia hemisphaericaexon
TCONS_00007922-exon-sc0000080-1575043694:517047..518702TCONS_00007922-exon-sc0000080-1575043694:517047..518702Clytia hemisphaericaexon
TCONS_00007922-exon-sc0000080-1575043694:515742..516861TCONS_00007922-exon-sc0000080-1575043694:515742..516861Clytia hemisphaericaexon
TCONS_00007922-exon-sc0000080-1510915933:519108..519299TCONS_00007922-exon-sc0000080-1510915933:519108..519299Clytia hemisphaericaexon
TCONS_00007922-exon-sc0000080-1510915933:517047..518702TCONS_00007922-exon-sc0000080-1510915933:517047..518702Clytia hemisphaericaexon
TCONS_00007922-exon-sc0000080-1510915933:515742..516861TCONS_00007922-exon-sc0000080-1510915933:515742..516861Clytia hemisphaericaexon
TCONS_00007922-exon-sc0000080-1491911889:519108..519299TCONS_00007922-exon-sc0000080-1491911889:519108..519299Clytia hemisphaericaexon
TCONS_00007922-exon-sc0000080-1491911889:517047..518702TCONS_00007922-exon-sc0000080-1491911889:517047..518702Clytia hemisphaericaexon
TCONS_00007922-exon-sc0000080-1491911889:515742..516861TCONS_00007922-exon-sc0000080-1491911889:515742..516861Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000080supercontigsc0000080:515742..519299 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.151614	0.0662972	0	0.228964	0	0	0.061613	0.127818	0.0124502	0	0	0.276418	0.822677	0	0.122984	1.92248	0.00228571	7.97513	7.86334	0.27338	3.57175e-07	0.413663	0.341325	0.0967879	0.0847219
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007922 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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