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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007916 ID=TCONS_00007916|Name=TCONS_00007916|organism=Clytia hemisphaerica|type=transcript|length=2899bp
tttaaactcaaatcaaccTCCTGACAAACTATTCAAAATCACAGCTGGCC
TACAATTTTAGCGTGACAGAcacaaaatatgaaattctTTTAGTATATCT
AGATTGTAACAAAAAAActcaatgaaaaattaaaaatggcaAGGCTTAGT
CTGAAGAGATGTTTGATCGGCTTTACAttgattttatgtttttggCTTGT
ATGGAAGGTCAAGTATAAAAATCAAGGATTCATGAAATATCTACCCAAAG
TAAATTTCTCATCTGTTGTCACACCATATGAATATCAAATGAAAGGGGAT
TTTCTACCTCCTCACTTACGTAAACAAAAACTTATCCTTTTCTTCACATC
ACATTTCTACAGTGACATCTGGAAAGGATTAGGTCCTGATGTATTACCTG
GGTACACCCAAAATGCACATTGTAACATTAAAGAATGTTCAATGACTTAT
GACAAAAAGAGAATAAACGAGGCAGATCTTGTGATATTTCATGGTGTAGA
TTTTGAATATAAGAATTATACTGATAAACATTTCCAAGCAATGTTAAAGA
AGAAACCATCTCATCAACGATGGGTGTTTTGGATGCATGAGACTCCTGTT
TACTATCCAGAACCTGGaaattatgataatttattCAATTGGACTATGAC
ATTCAGTCAAGGGTCTGATATCTACCACCCATATTACTCTTACAGAAGGC
TAACTGCTGATGATGACAGACCTGGAAAGTACATGAACTATGCTCTTGGA
AGAACAAAGAAAATAGCCTGGATGGTAAGTCATTGTGGTATGACAAGAGG
TGAATATGTTATGGAACTGCAAAAGTATACTGATGTTACTGTTTATGGTT
TGTGTGGGGCATCTTATGATAATATGGCAGGCATATGTTCTCGTGTTGAA
AGTGAGTGTATGGATCAATTGAATCAATATCGATTTTATCTTGCTTTTGA
AAACTCATTTTGTGAAGACTATGTGACAGAAAAGTATTATAAATTTGGCA
TAATGTATGGTGCTGTACCAATAGTGATGGGCGCTAGATACAATGCATTG
AATTCTATACCAGGGTCTTACATTGATGCTTCCACATTTCCTTCAGTACA
AGCTTTAGGAGAATACATTAATTTCCTCAGTGAAAATGATTATTATTACA
ATCAATATTTTGAGTGGAAAAATCACTTCAAAATGGACGATGGAATTGAT
AAGATTTGTTTACTTTGTCATGCAGCCCATGATGTAACTAGAAAGTCTAG
TTTCCATAAACATTTCCATGCTTTTTGGAGCAAACAAGCAATGTGTGATC
CCTATGAACCTGTCATTCAAAAGTTTGGTCACCAAATTGAACAGTCCAAA
CTTTCTAGAATAGGCGAAGGTACAAAATCATAGACCTAttttataatcaa
aacattatcttttttttataactCTTCCATTTTTACCTTTTGCactttat
tttttagatttagatttattttttaatcaatactAAATTTAatagtttta
tcaagtaaaattACACATCTAGAATTTCTGCCTTGTGTCTTCTTTTTCAC
TTTGCAGTAGTTTTCTTTAAGGTAGGCAATATTTCCAATTGGTCTTCTTG
ATAGTATTGTATTCTTTCCTCTTTAATAGATGAATAGTAAAGATAATTAA
atggatatttcaaaaataagaaatagtTTCCAGCTGAAATTTGGTTTGCA
TTTTATTTCAAGAACTATAGTAAAAGAATATTGCAGAAAAATGAGCAATT
ACATGAACTATTCTGAAGCTTCAAAGCTTTATGATGAAGCACGAGTTGCA
GCAGATGCTGAAAACATTTACAACATTTTCACTGGGCTTCTCAAGAAACC
AGCAAACAAAatcgaTCTTTTGGATATTGGATGTGGTACAGGCAACTACA
GTTATTCTTTCATGAAAAATGGTTTACAAAGCATTACCATTGCTGATGCT
TCTCAGGAGATGTTAGACTgtgccaaaatcaaaatgaaagtaTTTGAAGA
TAAAGTCACTGCACAAGATATCATTTTACCAAACTTACCATTTCCTGAGA
AAAGCTTTGATGTTATTTCTTGCATGCAGGTTTTACACCATATTGATTCT
GCTGCTTTAAAAGAATCAACCAAGGAACATCTTCAACGGGAAGACTATCC
AAACATGCTTGAAACCTTGAGTCAAGCTTACGATGTTTTAAAACCTGGTG
GGGTACTAGTTATTGATGTTATGTTTGAAGAAAATTGTGAAAGCTTTTGG
TGGACCAGATTATGTCCAATAGCTGCTAAGGCGTTCAAAAGACTAAGAAT
GAGCCAAAAGGACATGATTCAGTCCTTAGAAAAACTTAATTTCANTTGGT
GGACCAGATTATGTCCAATAGCTGCTAAGGCGTTCAAAAGACTAAGAATG
AGCCAAAAGGACATGATTCAGTCCTTAGAGAAACTTAATTTTGAGAATAT
TGTTTGCACATACTTTCCAGGCTCTCGCTTAGTTAAAAAGGAGATTTATG
ATGAAATTCAATGTATAGATGATCCTAAATGGAGATATTATCTTTCTCAG
TACAAATTGGTTGAAAAGTCTGGTGAATTAGATAACCTAATTAAAATTGT
AAAAGACGCAGAGACTTCTGGAAAACTGAAAGAGTATTTTGACGATTGGA
GTGAAAAGCTCTGGACACATGGGAATCATAGTGCTGTTTTTGCAATGAAG
CCTTTAGCAtagatttttgtttaatttttattaagtttgatttttcataa
atttttcaattgCTGGTAAAAGACTTATTTATAAATTATTAACTACGGTG
AGGGCTAGAAGGTTTATAAAGGTTTTTATAcgtttagaattttttataaa
gGTCATTTAAATACATACACATGTTTTTTCTGGGAAAAATCAATGTATC Run BLAST on NCBI transcript from alignment at sc0000080:432745..436170- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007916 ID=TCONS_00007916|Name=TCONS_00007916|organism=Clytia hemisphaerica|type=transcript|length=3426bp|location=Sequence derived from alignment at sc0000080:432745..436170- (Clytia hemisphaerica)
TTTAAACTCAAATCAACCTCCTGACAAACTATTCAAAATCACAGCTGGCC
TACAATTTTAGCGTGACAGACACAAAATATGAAATTCTTTTAGTATATCT
AGATTGTAACAAAAAAACTCAATGAAAAATTAAAAATGGCAAGGCTTAGT
CTGAAGAGATGTTTGATCGGCTTTACATTGATTTTATGTTTTTGGCTTGT
ATGGAAGGTCAAGTATAAAAATCAAGGATTCATGAAATATCTACCCAAAG
TAAATTTCTCATCTGTTGTCACACCATATGAATATCAAATGAAAGGGGAT
TTTCTACCTCCTCACTTACGTAAACAAAAACTTATCCTTTTCTTCACATC
ACATTTCTACAGTGACATCTGGAAAGGATTAGGTCCTGATGTATTACCTG
GGTACACCCAAAATGCACATTGTAACATTAAAGAATGTTCAATGACTTAT
GACAAAAAGAGAATAAACGAGGCAGATCTTGTGATATTTCATGGTGTAGA
TTTTGAATATAAGAATTATACTGATAAACATTTCCAAGCAATGTTAAAGA
AGAAACCATCTCATCAACGATGGGTGTTTTGGATGCATGAGACTCCTGTT
TACTATCCAGAACCTGGAAATTATGATAATTTATTCAATTGGACTATGAC
ATTCAGTCAAGGGTCTGATATCTACCACCCATATTACTCTTACAGAAGGC
TAACTGCTGATGATGACAGACCTGGAAAGTACATGAACTATGCTCTTGGA
AGAACAAAGAAAATAGCCTGGATGGTAAGTCATTGTGGTATGACAAGAGG
TGAATATGTTATGGAACTGCAAAAGTATACTGATGTTACTGTTTATGGTT
TGTGTGGGGCATCTTATGATAATATGGCAGGCATATGTTCTCGTGTTGAA
AGTGAGTGTATGGATCAATTGAATCAATATCGATTTTATCTTGCTTTTGA
AAACTCATTTTGTGAAGACTATGTGACAGAAAAGTATTATAAATTTGGCA
TAATGTATGGTGCTGTACCAATAGTGATGGGCGCTAGATACAATGCATTG
AATTCTATACCAGGGTCTTACATTGATGCTTCCACATTTCCTTCAGTACA
AGCTTTAGGAGAATACATTAATTTCCTCAGTGAAAATGATTATTATTACA
ATCAATATTTTGAGTGGAAAAATCACTTCAAAATGGACGATGGAATTGAT
AAGATTTGTTTACTTTGTCATGCAGCCCATGATGTAACTAGAAAGTCTAG
TTTCCATAAACATTTCCATGCTTTTTGGAGCAAACAAGCAATGTGTGATC
CCTATGAACCTGTCATTCAAAAGTTTGGTCACCAAATTGAACAGTCCAAA
CTTTCTAGAATAGGCGAAGGTACAAAATCATAGACCTATTTTATAATCAA
AACATTATCTTTTTTTTATAACTCTTCCATTTTTACCTTTTGCACTTTAT
TTTTTAGATTTAGATTTATTTTTTAATCAATACTAAATTTAATAGTTTTA
TCAAGTAAAATTACACATCTAGAATTTCTGCCTTGTGTCTTCTTTTTCAC
TTTGCAGTAGTTTTCTTTAAGGTAGGCAATATTTCCAATTGGTCTTCTTG
ATAGTATTGTATTCTTTCCTCTTTAATAGATGAATAGTAAAGATAATTAA
ATGGATATTTCAAAAATAAGAAATAGTTTCCAGCTGAAATTTGGTTTGCA
TTTTATTTCAAGAACTATAGTAAAAGGTAATACATTTCATTCAAAAATCA
TATTGCTTCAACCAGAATGCATTACGCAGCTAATACCTAAACTCGTTACA
CTGGTGGTGAAATGTATAATCTGTAAAAATCATAAAATTGTTAATAAAAA
TAGAATGTTTTAAAGAAAGTTACTTGAAACAGAAACCAAAGATTCATTCT
TACCTATGTATCCTATATACTTATTAAAGAGCTGTGAATTAACCATTCAA
TTGGAGTGTTTACTCTTTTGTTAGTACTGAACACAGTTGATGGTCATATT
TTCTTTATCAATAGAATATTGCAGAAAAATGAGCAATTACATGAACTATT
CTGAAGCTTCAAAGCTTTATGATGAAGCACGAGTTGCAGCAGATGCTGAA
AACATTTACAACATTTTCACTGGGCTTCTCAAGAAACCAGCAAACAAAGT
ATTTCATTTATCAATGATTTCTTATGTTTGTACATTGAGCCGGTTTGTTA
ACAACCTCGTTTCCTGCGTATTATCAGCTTTTTATGATTTTTTATCAAAG
TATTATTTTGCATGAGCCTACACCAGGGCATTCTCTGGCGTTCATCATTT
TTCTTCAAAAACTTTTTAAATAATTCAAAAATAAATATTATGGTGTATTT
TATTGTAATTTTATTGCAATTTTTCTTTAACTTTTAGATCGATCTTTTGG
ATATTGGATGTGGTACAGGCAACTACAGTTATTCTTTCATGAAAAATGGT
TTACAAAGCATTACCATTGCTGATGCTTCTCAGGAGATGTTAGACTGTGC
CAAAATCAAAATGAAAGTATTTGAAGATAAAGTCACTGCACAAGATATCA
TTTTACCAAACTTACCATTTCCTGAGAAAAGCTTTGATGTTATTTCTTGC
ATGCAGGTTTTACACCATATTGATTCTGCTGCTTTAAAAGAATCAACCAA
GGAACATCTTCAACGGGAAGACTATCCAAACATGCTTGAAACCTTGAGTC
AAGCTTACGATGTTTTAAAACCTGGTGGGGTACTAGTTATTGATGTTATG
TTTGAAGAAAATTGTGAAAGCTTTTGGTGGACCAGATTATGTCCAATAGC
TGCTAAGGCGTTCAAAAGACTAAGAATGAGCCAAAAGGACATGATTCAGT
CCTTAGAAAAACTTAATTTCANTTGGTGGACCAGATTATGTCCAATAGCT
GCTAAGGCGTTCAAAAGACTAAGAATGAGCCAAAAGGACATGATTCAGTC
CTTAGAGAAACTTAATTTTGAGAATATTGTTTGCACATACTTTCCAGGCT
CTCGCTTAGTTAAAAAGGAGATTTATGATGAAATTCAATGTATAGATGAT
CCTAAATGGAGATATTATCTTTCTCAGTACAAATTGGTTGAAAAGTCTGG
TGAATTAGATAACCTAATTAAAATTGTAAAAGACGCAGAGACTTCTGGAA
AACTGAAAGAGTATTTTGACGATTGGAGTGAAAAGCTCTGGACACATGGG
AATCATAGTGCTGTTTTTGCAATGAAGCCTTTAGCATAGATTTTTGTTTA
ATTTTTATTAAGTTTGATTTTTCATAAATTTTTCAATTGCTGGTAAAAGA
CTTATTTATAAATTATTAACTACGGTGAGGGCTAGAAGGTTTATAAAGGT
TTTTATACGTTTAGAATTTTTTATAAAGGTCATTTAAATACATACACATG
TTTTTTCTGGGAAAAATCAATGTATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007916-exon-sc0000080-1575043694:434445..436170 | TCONS_00007916-exon-sc0000080-1575043694:434445..436170 | Clytia hemisphaerica | exon |
| TCONS_00007916-exon-sc0000080-1575043694:434023..434156 | TCONS_00007916-exon-sc0000080-1575043694:434023..434156 | Clytia hemisphaerica | exon |
| TCONS_00007916-exon-sc0000080-1575043694:432745..433783 | TCONS_00007916-exon-sc0000080-1575043694:432745..433783 | Clytia hemisphaerica | exon |
| TCONS_00007916-exon-sc0000080-1510915933:434445..436170 | TCONS_00007916-exon-sc0000080-1510915933:434445..436170 | Clytia hemisphaerica | exon |
| TCONS_00007916-exon-sc0000080-1510915933:434023..434156 | TCONS_00007916-exon-sc0000080-1510915933:434023..434156 | Clytia hemisphaerica | exon |
| TCONS_00007916-exon-sc0000080-1510915933:432745..433783 | TCONS_00007916-exon-sc0000080-1510915933:432745..433783 | Clytia hemisphaerica | exon |
| TCONS_00007916-exon-sc0000080-1491911889:434445..436170 | TCONS_00007916-exon-sc0000080-1491911889:434445..436170 | Clytia hemisphaerica | exon |
| TCONS_00007916-exon-sc0000080-1491911889:434023..434156 | TCONS_00007916-exon-sc0000080-1491911889:434023..434156 | Clytia hemisphaerica | exon |
| TCONS_00007916-exon-sc0000080-1491911889:432745..433783 | TCONS_00007916-exon-sc0000080-1491911889:432745..433783 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000080 | supercontig | sc0000080:432745..436170 - |
Blast
BLAST of TCONS_00007916 vs. Swiss-Prot (Human)
Match: FUT4 (Alpha-(1,3)-fucosyltransferase 4 OS=Homo sapiens GN=FUT4 PE=2 SV=3) HSP 1 Score: 121.324 bits (303), Expect = 1.485e-28 Identity = 92/310 (29.68%), Postives = 138/310 (44.52%), Query Frame = 1
Query: 424 NIKECSMTYDKKRINEADLVIFH-----------------------GVDFEYKNYTDKHFQAML----KKKPSHQRWVFWMHETPVYYPEPGNY-DNLFNWTMTFSQGSDIYHPY-YSYRRLTADDDRPGKYMNYALGRTKK-IAWMVSHCG--MTRGEYVMELQKYTDVTVYGLCGASYDNMAGICSRVESECMDQLNQYRFYLAFENSFCEDYVTEKYYKFGIMYGAVPIVMGA-RYNALNSIP-GSYIDASTFPSVQALGEYINFLSENDYYYNQYFEWKNHFKM------DDGIDKICLLCHAAHD 1233
NI C + D+ EA V+FH VD +Y + A +P QRWV+ E+P + P + NLFNWT+++ SD++ PY Y Y R D P + L R + +AW+VSH R Y +L ++ V V+G G E + + +Y+FYLAFENS DY+TEK ++ ++ GAVP+V+G R N +P G++I FPS +L Y+ FL N Y +YF W+ + + D+ ++C A D
Sbjct: 216 NISGCRLLTDRASYGEAQAVLFHHRDLVKGPPDWPPPWGIQAHTAEEVDLRVLDYEEAAAAAEALATSSPRPPGQRWVWMNFESPSHSPGLRSLASNLFNWTLSYRADSDVFVPYGYLYPRSHPGD--PPSGLAPPLSRKQGLVAWVVSHWDERQARVRYYHQLSQHVTVDVFGRGGPGQPV-------PEIGLLHTVARYKFYLAFENSQHLDYITEKLWRNALLAGAVPVVLGPDRANYERFVPRGAFIHVDDFPSASSLASYLLFLDRNPAVYRRYFHWRRSYAVHITSFWDEPWCRVCQAVQRAGD 516
The following BLAST results are available for this feature:
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