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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007908 ID=TCONS_00007908|Name=TCONS_00007908|organism=Clytia hemisphaerica|type=transcript|length=5341bpRun BLAST on NCBI transcript from alignment at sc0000080:346656..368629- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00007908 ID=TCONS_00007908|Name=TCONS_00007908|organism=Clytia hemisphaerica|type=transcript|length=21974bp|location=Sequence derived from alignment at sc0000080:346656..368629- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00007908 vs. Swiss-Prot (Human)
Match: SHAN3 (SH3 and multiple ankyrin repeat domains protein 3 OS=Homo sapiens GN=SHANK3 PE=1 SV=3) HSP 1 Score: 360.918 bits (925), Expect = 3.364e-101 Identity = 175/341 (51.32%), Postives = 235/341 (68.91%), Query Frame = 3
Query: 282 KNFEFCTSEPIWNAKQKVLIEFASNKDLVDALNFGFYMPPSGGRAGKFLDEQRTFKDYP--MDRTSGSLEFRYKRRIFRHLHLQDEKKLQKINTKKYRKKFFEHIYARNLPEMEKLLKKGLDPNFQDEKSGETPLTATAMLDDCMEMLKILIQYGSYMDFRTKAGKTALHNVAIIGKDVALKNLLDLGASPNYRDSKGLTPLYQSIQFGSNPLICELLLKEKSLLGITDFHGCEEIHQACKLGYVQHVEHLVFYGANVNAKTASGNTPLHICALENQESCARVLLFRGADRSTANYAQQTAYDVAILSNNLDVALLLNDFDPRNVTPFKHKPDYVERKRLA 1298
K + P+W AKQ+VL A N L DALN+G + PPS GRAGKFLDE+R ++YP +D LEFRYKRR++ +L D+K+ K++TK KKF +++ + ++ +LL KGLDPNF D SGE PL+ A LD+ ++LK+L G+++DFRT+ G TA+H AL LLDLGASP+Y+DS+GLTPLY S G + L CELLL + + LGITD +G +EIHQAC+ G+VQH+EHL+FYGA++ A+ ASGNT LHICAL NQESCARVLLFRGA+R NY QTA+ VAI++ N ++A ++ +V PF+ P Y +R+RLA
Sbjct: 22 KCLRLDPAAPVWAAKQRVLC--ALNHSLQDALNYGLFQPPSRGRAGKFLDEERLLQEYPPNLDTPLPYLEFRYKRRVYAQ-NLIDDKQFAKLHTKANLKKFMDYVQLHSTDKVARLLDKGLDPNFHDPDSGECPLSLAAQLDNATDLLKVLKNGGAHLDFRTRDGLTAVHCATRQRNAAALTTLLDLGASPDYKDSRGLTPLYHSALGGGDALCCELLLHDHAQLGITDENGWQEIHQACRFGHVQHLEHLLFYGADMGAQNASGNTALHICALYNQESCARVLLFRGANRDVRNYNSQTAFQVAIIAGNFELAEVIKTHKDSDVVPFRETPSYAKRRRLA 359 HSP 2 Score: 161.384 bits (407), Expect = 2.180e-39 Identity = 88/213 (41.31%), Postives = 131/213 (61.50%), Query Frame = 3
Query: 1671 RTRLYASVPGRSFVAIKDYEAASQGELALKKGDSVEVLYVGEAGFWEGSVRGRAGWFPSACVQEV-----------KKGDSLRGKRTWLGGKKKSPVADIFAEGD-VPKPRVITLKKSDKQGFGFQMRGANSHLPHIDFQPSPQFPALQYIGEVDKGGVAEKAGLKPGDFVLELNHENVVNATHGYAVSLISGGGKSLTIKVITIAPVTSENG 2273
+ +LY++VPGR F+A+K + +GE+ L +G++V+VL +GE GFWEG+V+GR GWFP+ CV+EV ++ + R R + G S + + D V +V L+K D +GFGF +RGA + P +F P+P FPALQY+ VD GVA +AGL+ GDF++E+N NVV H V+LI GG L +KV+++ E+G
Sbjct: 464 KRKLYSAVPGRKFIAVKAHSPQGEGEIPLHRGEAVKVLSIGEGGFWEGTVKGRTGWFPADCVEEVQMRQHDTRPETREDRTKRLFRHYTVGSYDS----LTSHSDYVIDDKVAVLQKRDHEGFGFVLRGAKAETPIEEFTPTPAFPALQYLESVDVEGVAWRAGLRTGDFLIEVNGVNVVKVGHKQVVALIRQGGNRLVMKVVSVTRKPEEDG 672 The following BLAST results are available for this feature:
BLAST of TCONS_00007908 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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