TCONS_00007900 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007900
Unique NameTCONS_00007900
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length602

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007900 ID=TCONS_00007900|Name=TCONS_00007900|organism=Clytia hemisphaerica|type=transcript|length=602bp
GGCAACATAAAATTTTCGCTAGAAAATAAAATCGAACCAAAATTGTCAGC
GCCTTGAAAATGCAGCTTAGATTGATGTGGATAAGCATATTAGTAGCGGT
AAGTATTGTTTTATGCGAGGTTCATGGGAGCAATGGTGAAAATGAGGAAA
GACGGATCGACAAAGAAGCACAAAAAGCGTTGCGTGATTCGGCAACGCAG
AAATCTCATTGGGAATCATTCACGGAAAACGTGAAACGAagatatttcaa
acaaaagggAGGTGCTGTCATCGATCAAACAAATGGTCGCATCGTGAGTT
ATGATGAATACTATCAATCGCTGAAACTGAAATATACCGAGAAAGATTGG
GAGTTGAAAGAGGACCGAAAAGAGGACAATTATCcggaaaaattgaagaa
gaaattgCGGGATGGCGAAAGTATTACACAAGCAGAAGAAGCGGAATTTG
AAAACGAATACGGACAGTACAAAAGTCGTCCGGAAACCACTGTTTTCGAC
CTGGTGAACGTCATCAACAGAGGAAATGACATTAATTTAGACGAAGCAGA
CATTCAACACACTCCAGAGTCCATTGACATCAACAAATATGTAAAGGAAC
AC
Run BLAST on NCBI

transcript from alignment at sc0000080:299474..307373-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007900 ID=TCONS_00007900|Name=TCONS_00007900|organism=Clytia hemisphaerica|type=transcript|length=7900bp|location=Sequence derived from alignment at sc0000080:299474..307373- (Clytia hemisphaerica)
GGCAACATAAAATTTTCGCTAGAAAATAAAATCGAACCAAAATTGTCAGC
GCCTTGAAAATGCAGCTTAGATTGATGTGGATAAGCATATTAGTAGCGGT
AAGTATTGTTTTATGCGAGGTTCATGGGAGCAATGGTGAAAATGAGGAAA
GACGGATCGACAAAGAAGCACAAAAAGGTAAAGAATCTGTAAAGGCCAGA
TGAGATGGAGTTTTTATAAGATACTTTAATATAATTGGCCATTTGAAGTA
ATAAGATTGACGCGTTCTTTACAAAAAGTAACAAAATTGGTTTTTACTGG
TTAACGATCAACCAAATCAAATAAGAGCTTGTAAAAACTCCATCTCGGAG
TTAAGGCGTAATAATACGAGTCCCATTAACATGGGGGAATAGTCATCAGG
CCGTTGCCTGACATTGCCTTCATCAGTTTAAGGAAAAATACCCTAAAATT
TCAAGTCTATCGAGCTCTTACCCGTAAGAAACTGCATTTTTGATCGTTTA
GCTTGGGAACCGAAGTCTCTTTTTATTAGCTGTCTACATTACTCCACTTG
TTCTTGACCCATCTCTTTATAGCGTTGCGTGATTCGGCAACGCAGAAATC
TCATTGGGAATCATTCACGGAAAACGTGAAACGAAGATATTTCAAACAAA
AGGGAGGTGCTGTCATCGATCAAAGTAAGTAAAATAGAATTTCTGTTTAT
CGAAAAATTGTTCTGAAAAATTTGGGAGAAAGATAATTCTAGGCTCGATA
TTGAGTTTAAAACAATTCCTCATTAAAAAGAATAAGCACAATCCTTTCCT
AAACGGGCCTAGAATGACGCGAGAATTACACTTAAAGAAACGGATGTCGT
GCGGTTCAGACTTCTTAAAATGAACAATTCTCCTTTTACAGCAAATGGTC
GCATCGTGAGTTATGATGAATACTATCAATCGCTGAAACTGAAATATACC
GAGAAAGGTAAAAGAAACTATAAAGCGCTGAGTTATCTAATAGTAGGGGG
AAATTTGTAAAATCGCTCGATTTTTTTAGTCAAAGCACTAAATACATTTT
TTGGAAAGCTAAGGGTAAGGGAATCAAAATAACTTGGGTGTCAATTTTTT
TTCGGACACTTTGGTGTGATTTTCGGACAAATATGACGGTCTTAGGCAAA
AATTATAGGGTCGAAAATTAATGAAAATTGTAGCTTGAGAAAATAGAGAC
CTCTTGTATATTTTTGGAAAGCTCTCAAAAAATTAAGATGTGTATTAAAT
TTCGCGAAATTTGGCCTAAAAAATCGCGAAATTAAGTACCTGCGAAATTT
TGTAACACGCGAAATATAATACCAATAAGGTTGCGAGTATAGGTGATTTC
AGTACCTAACTCGAGATATAACAGGTCTCCGTTTACTCAAGCTAAAATTT
TCATTAATTTTTCACCCCATGATTTTTGCCCGAGACCGTCATATTTGTCC
GAAAATCACACCAAAGTGTCCGAAAAAAAATTAGCACCCAAGTTATTTTG
ATTCTCCTACCCTTAAGCTTTCCAAAAATGTATTACAAGTGCTTTGACTA
AAAAAATCGAGCGACCTCAAAAAAACGAACAAAAATCTCCCCCTTAAAGG
TTGAGACCTGGCTGTGATCCTTTTCTTGCCCAGCGCAATAATAATTTAAA
GAGGGGTAAGTGAAAACAAGGCTCAATAGTATCGATATTGGGAATCAATG
TTTAGAAGTATGTGGGTTAGTTAGACAATGTCTCAAACCTCGAATAGTTT
GCAATAAGTAAGGCGGACTTAAATCCTGATACTTTCTTTGGTTTTCATAA
AGGGTAACTGAATTCTAAACGCAAAAGAGAGTTGTTGATCCAATATTGTG
CTGACTGGTCTAATAGTCATTTACAGAATAGACTCGGATTTTAGATTGGG
AGTTGAAAGAGGACCGAAAAGAGGACAATTATCCGGAAAAATTGAAGAAG
AAATTGCGGGATGGCGAAAGTATTACACAAGCAGAAGAAGCGGAATTTGA
AAACGAATACGGACAGTACAAAAGTCGTCCGGAAACCACTGTTTTCGACC
TGGTGAACGTCATCAACAGAGGTTAGTTAACATCAAAAACATTAAACAAA
TTGAGCATACTACAATTGACTGATATCTAACGCTATCATACGAAATACAA
TTGCGTTTTATTGAGATCACCTAAAATGTAGAAAAGGCAGATCTGAGCCT
CAGATTTTCCCCAATCTTTCCCTAAGCCTAAGGGTTGAGGTTTTCGGTTT
TCTTTAACGTTATTATTTAAAGAATTGAAACGTTATAAATAGTTCCTAAA
CCTTACCCTTTGGCAATTGTCCGGATATCCAGGCTAGCATTTGCTTTGCT
ATCCTGTTTACTGTTTAATATAAATAGCAAGTGTTTCAAAATTTCAAAAT
AGTTTATTTAAAGTCTGCTCACGATAAGTGTGCACTCTTTTTTCTTTTAC
TTATAATTTTTGAAGGAATTCTTCAATCTTTATAAATTTGGTATCGTTGG
AGAGATATTTGTGAGTGGAACAATTTGAAATAAAAAAGTCTTCAATTAAA
TTCTAAAAACGAAGATGAAAATGAAGAAGAAAAAATGAAGATCTTGTAGA
GAAGTGCTATAACTTTCATTTTCACTGGAGAGATTCTTTGATCTTAGGAG
ATCATCACTGTGAAGAAATTTCACTAAAATATTTATTCAATATAAAGTTA
TGATACAAAGTTAATACACGTTTTTTCATTAGAACCTAGTTTATAAGAAC
ATATAGGCTGAAATTCGTCGAAAAATTAAGAACATCTTAAGAACATGCCC
AGCCTCAGTTTGGAAAAAAATGACAAGNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATATTGTCCAAATTTTG
CCAAATTTAAGTGCTCTTTATTTTGTATCATATTGTCGATTTAGAGTAGT
CTGAAAAATTAAGAACGCATTTAAGAACATTTTAGGGTGAAAATTGCTAA
AAAAATAAGCACATCCAGGCTCAGCCAAATTTTAGGTGTTCTAATAAAAA
AAAACGTGTAAGTGATTGACCCCAGAAAACAGCAGAAAACAGCGTTTTTA
GACGTATAACTTTGCTTGATATCTTTTGACTGAATGATTATTTTTGAGAA
ATTTTTTCACAGTGATGATGTTCGATAATCAAGGATTCACTTCAGTGAAA
ATGATAGTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATATCTC
TCCAACGATACCAAATTTATAAAGATTGAAGAATTCCTTCGAAAGTTATA
GGTAAATGAAAAAAGAGTGCACACTTATCGTGAATAGACTTTAATTAAGT
TTCTTTAAATAAATTTAAAAATACACCTGCGTACGTTTTTCTTACGAGCA
TATTTGCTACAAAAACTTTAGAATTCTTAAAAGTTGAATCATTCAGTGAA
AAACATCTCTAACAGAACCTCAAAACCAGGAGAAGGAGAATGTGGATGTT
TTGCCCCAAAGTTTAGTGTAAAATTCCGTTTTGAAACGATTGAAAATTAT
GAATTCCGAAAACGAATGGAAAATATTGTGAAAATATTTGGAAAAATAGA
TAGAAAAGTGTTTTGAGAAGTTGTTGGATTCTATTCATTTCTGATAAAGA
AATTTTCCGTAATGAAATCAATGGACCACTCCGAGATGTGGACGGCAGCA
TACATTATATATGGTTTAATTATCTCATGCTTTAACTTTCTACAAATCGT
TGTCATCTATAAAATCAACAAGAAAATCCCAAAATCCATGATCTTCATTT
TGAATCTATCCTGCTCCGATATGTTTGTTGGAACAGTCGTAGCTTTGTCC
GCCATTTTGAGCATAATTGCACCACCTCAAAATGAAGGTCTCTTTTTTCA
TACTTTGAGATATTGTGGAAATCGGATTGCACTTGTGATATCATTGGTAA
GTTTAGTGGTCATTTCTTTCGATCGCTTATTCAGTGTTTTGTATCCATTC
AAATATCGACTCATACATCGGAGAAGGTTCATTATTTTGATTATTATCAT
TTGGAGTATATCAATAGCTTTGCCTTTAACAATCTGGTTTGTTTTATCTG
AAAATGATGATGATGATTCAAAAGATCCCTTTAGGAGCAGCAGTATTTTA
TTTCCTATACTAACAATTGTGGTAATTCTCGAATTGAGTTTTTCTTACGC
CTTGATATGGCTCCTTATTCGTCGGCAAAACCGAAAATTCGTCATACAAA
ATACCGAAAACCGAGTATATTCAGCGGCCGAAAAACAACGCATATTGCAA
GAGAGGAAAATAGCGAAATTGACAACGACAATGGTTGTTTGCTTTAGTGT
TTTTGGTTTCCCATATGCGTTGGTGTCTTTACTGAGTGATGTAGGCTCGG
TTGAAGTTCATAGTTTTATACGACACTTTGTTACTTTATTATTTATAACT
AATTCGTTTGCCAACACAATATTTTATTTTGTGCACATTAAGAGCAAAAT
ATACCGATATTTTATCAGGATATTCAATGTCAAATCCAAATATAAAGCTT
AAACCTAAAATTCTTCGTTTTCTTGTCTTTTTCATTCTTGATATGCATAA
GTCATTTTTCTAACCGGAACATCCGAATAGTCCAGAATTTGACCCCTCTA
TGTTGCTAAATAAAGATAGAGACACGGTGGTCAAAAACCGGCTTTCTTCG
GATGCTTTTGTTAGAAAAATGACGTCATCTTGACTTACGCCAAGAATCCC
TGAAAGATTCAAAGGAAGCCGCAAAAAAGGATTATTTTTCCTATTATTTT
TTTCCAATTTAGGTGCGATCTTTGAATGTTTTCAAAATTAATAATTNTGT
AGCTTTGTCCGCCATTTTGAGCATAATTGCACCACCTCAAAATGAAGGTC
TCTTTTTTCATACTTTGAGATATTGTGGAAATCGGATTGCACTTGTGATA
TCATTGGTAAGTTTAGTGGTCATTTCTTTCGATCGCTTATTCAGTGTTTT
GTATCCATTCAAATATCGACTCATACATCGGAGAAGGTTCATTATTTTGA
TTATTATCATTTGGAGTATATCAATAGCTTTGCCTTTAACAATCTGGTTT
GTTTTATCTGAAAATGATGATGATGATTCAAAAGATCCCTTTAGGAGCAG
CAGTATTTTATTTCCTATACTAACAATTGTGGTAATTCTCGAATTGAGTT
TTTCTTACGCCTTGATATGGCTCCTTATTCGTCGGCAAAACCGAAAATTC
GTCATACAAAATACCGAAAACCGAGTATATTCAGCCGCCGAAAAACAACG
CATATTGCAAGAGAGGAAAATAGCGAAATTGACAACGACAATGGTTGTTT
GCTTTAGTGTTTTTGGTTTCCCATATGCGTTGGTGTCTTTACTGAGTGAT
GTAGGCTCGGTTGAAGTTCATAGTTTTATACGACACTTTGTTACTTTATT
ATTTATAACTAATTCGTTTGCCAACACAATATTTTATTTTGTGCACATTA
AGAGCAAAATATACCGATATTTTATCAGGATATTCAATGTCAAATCCAAA
TATAAAGCTTAAATCTAAAATTCTTCGTTTTCTTGTCTTTTTCATTCTTG
ATATGCATAAGTCATTTTTCTAACCGGAACATCCGAATAGTCCAGAATTT
TACCCCTCTATGTTGCTAAATAAAGATAGAAAAACGGTGGTCAAAATCCG
GCTTTCTTCGGATGATTTCGTTAGATATATGACGTCATCTTGACTTACGC
CAAGAATCCCTGAACTCCTCTTCCCGATGAAAGATTCAAAGGAAGCCGCA
AAAAAGGATTATTTTTCCTATTATTTTTTTCCAATTTAGGTGCGATCTTT
GAATGTTTTCAAAATTAATAATTTTAGTCCAATAAAAATACACCTGCATA
CATTTTTCTTATAAGCATATTTCCTAGAAAAATCTTGGAACCGCTAAATT
TTGGAAGAATGGAAGCTTAAAATGACAAAAGTGACATTGAGGCGGGAAAT
GAAAAGCAATACGGTGTAAAAATCCGCCTCACATTTGCGGCTGGTGCTGT
TCCTGAAAAGGAGTTTCTTTGTTTAATATTACTAAAAACAAATAATTTTA
TGGTTGTGAAACCAATTTAATTAAATTGATATAATTTATAAAAAAACATT
GGGATGAAAATGAAAACAAATTTCGAAATATGCGAAATATTAGAAGTACT
GTTTATATAATTTATAAAGGGTCGGTCTCATGGAATCGTTGGATGTAACA
AATAACTCCAAAATGTGGATGGAAACATATATCGTATTTGGTTTAATTAT
CTCATGCTTCAATATTCTACAAATCATAGTCATCTATAAAATCAACAAAA
AAATCCCAAAATCCATGATCTTCATTTTGAATCTATCCTGCTCCGATTTG
TTTGTTGGAGGAGTCGTAGCTTTGTCCGCCATTTTGAGAATAATTGTACC
ACCTCAAAATGAAGGTCTCTTTATCCAAACTTTGAGATATTGTGGATTGA
GGATTGGACTTGTGATATCTTTGGGAAACTTGGTGCTGATTGCTTTCGAT
CGCTTATTAAGTGTTGTTTACCCATTCAAATATCCACTCATACCTCGGAG
GAGGTTTATCATTTTTATTGTTATCATTTGGAGTATATCAATAGCTTCGC
CTTTAATCTGGTTTGTTGTTTTGTCAGAAGCAGATCCTGAGATATTCTTC
AGGAAAAGTAACATTGGATTTCCTATATTAACGATTTTCGCAATCTCGGA
AATGATTTTTTCGTACGTTTTTATATGGTTTCGTATTCGTCGACAAAACC
GAAAATTCGCTATACGAGATACCGAAAACCGAGAATATTCGGCGGCCGAG
AAAAAACGACTATTACAAGAGACGAAGATAGCGAAACTGGCAACGACAAT
TATTGTTTGTTTCAGCGTTTTTAGTTTACCCCATACCTTGGTATCGCTTT
TAAGCGAGGTAGCTTCAATTGAAATACACAGCTCTGTGCGATATCTTGTA
ACGTTATTGTTTATTACCAACTCTTTTGTCAACACACTATTATATTTTCT
GCACATCAAGAGTAAAGTTTACCGATATTTTATTAAAATATTCCATAAAA
AATCTTAATATACCACTATCAAAATTTAAATTTGTAGTTCCATCCTTTTT
ATCCTTTTTCTGTTCTTTTTCTCCATTACAATCTTGGATGAATCGACAAT
TATAGAGCGAGGATTGAAGAGCGCATTCTCTAACATCTGCTACTCCCGTC
TGATTATTACACTTTCTATAAAAAACCAGTATTCGAGGCTCGCCTGTTGT
AATCGATTGATTTTAAAGGAAAAATTGGATTATTTCTTACTTTATACCCC
ATCTTTAAAGCCGCTATCATTTCTGACAGCAAGCTGCGAAATAGCTAAGT
TTTTTTGCATTGTTGAGCCTCGTTGTTCTTATGAAATTGCTTTTGCAAAA
AACGTATATCAACTTTTTAGGAAATGACATTAATTTAGACGAAGCAGACA
TTCAACACACTCCAGAGTCCATTGACATCAACAAATATGTAAAGGAACAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004465XLOC_004465Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007900-exon-sc0000080-1575043694:307197..307373TCONS_00007900-exon-sc0000080-1575043694:307197..307373Clytia hemisphaericaexon
TCONS_00007900-exon-sc0000080-1575043694:306700..306801TCONS_00007900-exon-sc0000080-1575043694:306700..306801Clytia hemisphaericaexon
TCONS_00007900-exon-sc0000080-1575043694:306417..306482TCONS_00007900-exon-sc0000080-1575043694:306417..306482Clytia hemisphaericaexon
TCONS_00007900-exon-sc0000080-1575043694:305303..305479TCONS_00007900-exon-sc0000080-1575043694:305303..305479Clytia hemisphaericaexon
TCONS_00007900-exon-sc0000080-1575043694:299474..299553TCONS_00007900-exon-sc0000080-1575043694:299474..299553Clytia hemisphaericaexon
TCONS_00007900-exon-sc0000080-1510915933:307197..307373TCONS_00007900-exon-sc0000080-1510915933:307197..307373Clytia hemisphaericaexon
TCONS_00007900-exon-sc0000080-1510915933:306700..306801TCONS_00007900-exon-sc0000080-1510915933:306700..306801Clytia hemisphaericaexon
TCONS_00007900-exon-sc0000080-1510915933:306417..306482TCONS_00007900-exon-sc0000080-1510915933:306417..306482Clytia hemisphaericaexon
TCONS_00007900-exon-sc0000080-1510915933:305303..305479TCONS_00007900-exon-sc0000080-1510915933:305303..305479Clytia hemisphaericaexon
TCONS_00007900-exon-sc0000080-1510915933:299474..299553TCONS_00007900-exon-sc0000080-1510915933:299474..299553Clytia hemisphaericaexon
TCONS_00007900-exon-sc0000080-1491911889:307197..307373TCONS_00007900-exon-sc0000080-1491911889:307197..307373Clytia hemisphaericaexon
TCONS_00007900-exon-sc0000080-1491911889:306700..306801TCONS_00007900-exon-sc0000080-1491911889:306700..306801Clytia hemisphaericaexon
TCONS_00007900-exon-sc0000080-1491911889:306417..306482TCONS_00007900-exon-sc0000080-1491911889:306417..306482Clytia hemisphaericaexon
TCONS_00007900-exon-sc0000080-1491911889:305303..305479TCONS_00007900-exon-sc0000080-1491911889:305303..305479Clytia hemisphaericaexon
TCONS_00007900-exon-sc0000080-1491911889:299474..299553TCONS_00007900-exon-sc0000080-1491911889:299474..299553Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000080supercontigsc0000080:299474..307373 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	4.01839	2.4501	0	0	0	0	8.89009	17.6746	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007900 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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