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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007897 ID=TCONS_00007897|Name=TCONS_00007897|organism=Clytia hemisphaerica|type=transcript|length=2072bp
TCCTACTCCAACAACTAAACAAAAACACAAGGGAATTAACGTCAAAATGT
GCTAAATgtttcttgaaaaaaagtctTTGAATTTCTTATAGTGAGTTGTT
GAGAGTGTGTTCTGAATGGTGATTTATTCGTCATTGAGAACAAGTCTCAA
AAGAAGccgcaaaaaaagaaagaatgatATTTAGAGTGCAAAACATAAAA
CGAAGAACAGATTGTGAATCAAGTGGGATAACATATTGATAAATAATGCA
CGAGGAATTCTGGTCAACAactaaagaaaatgaggggAAATTAATGTTCC
AATTCCATTTCTCATTTAGATTTTGACAAATGAGGAAATAAATTAAACAA
ATGGCTTGGTTTTGAGGTTAAGAAAGCAACATTCAAACCAACCAAGAAAG
AATCATCAAAACTCAGACAGAAGAAATGCAGACACATCGTAGAACACGAA
AGTTGAGCACACGTTCACAACAATTGATCAATACACTTTATGAATCAGGC
GCAGACAGCGGATTGGACAGTTCAGGAGAAGAGAGCACTCATAGCAGCGA
GGAGATATCAGAGCTATATTTCATAACAGACTCAACAGTCAACATGAGGG
CCTTCAACGAGCTGGACACCAACATCGAGCAATTACGTAAAGAAATCATA
CGCGCTTGCGACAATTTGGTTCGAGCGGTCGAACAACGCAAGGAAGCATT
ACTACAACACgtagaaaacattcgaaatgaAAAAGCAGAAAATCTGAAAG
CTGAGAAAGACAATTTGAACTATTTGAAACCAAGTATGTTGGATATGGGA
AGTTGTTTAAGATTTGTTGTGGATGAAGCTAGAGAAGATACTTCCCTTTA
CAATATGATCCATGAGTATGGATGCATTGATGAAGGCAGAGCATCTGCTT
CAAAGTCAGGAGCCAAAGGGATCGGACTTCGATTCGCTATAGCAGACGAA
GCCACACAATTTGAACTTATTACACGCAATAATTGCGGTGAAACCAGTTG
GGTTGAACAAGACCAAGTTGATGTTACaatcaagaaagaaaatattcatC
AAAAGTGCGGTGTTAAAAATAACTGTAATGGTTCTTATAATGTCTTCTAT
GAATTACATGAACCAGGACTCTATGAAATCCATGTTAAAGTGAACGGATG
TCATGTTCCAGATTCTCCATTCCGCTGCAACGTCTTCGAGAAACACAACG
TCAGTTTCTTAGACGACACTCAAGATGAATGGACCTTTCAGAATGGTGAA
AAATCGGCTCTCTTTGAAAAGAATGAGCACCAGCATACTTCAAAATTATA
CTCCAAAGACAATACCTCAGCACGTGCGTGGAAAGTACGCGTCAATACCG
CTTGTccgaaaatcaaagtcaaattcGGATATTCAAATCACACTAAACTG
ATTCCGGACTTGacagaagaatatttttgtaaatttgatttgAACGATTT
ATTGGGCAATGATTATTCAACCAGTATTCCTAACCATCACACGTATGCGG
ATAGCCATTACCACAAGCACAACCGCCGTACAAAACACGGGAAGACGCGG
GAACGTAAGCAATCTACGTATCACCGTTCATCTCTCAATTTCGTCATTTT
CCAAGACACAACTGAAAAATTGATCCACGTTGCGGCCGAGGGGACTGAGC
ACGAGAAAACGACCTCTTTTAAAGGGGATTTACAAAAATTAGTGCCTTTC
ATTGGCATCAAGCACTTCTGTAAGAACTCTAACTGCCCAAGACCGCAACT
TGTTTTTGCGTAGGCTGTTGTCATCAAAATGaaccaaatcaaaacaattt
ttatataaatatttgtagataaaattttaatttttttttggatcatTGCC
GATCAGTAAATAGAAATTCTtatgaaaatttatgaaaagttcttttttaa
atagaaaGCCTCTACTTCATGCCGTAATATTGTactttatttagaaattt
tatgatGTAAATAAACTTGTATATATGAATAATCTAAAAAGTGAAGAATA
TTTGTAATATAAAAACCCATATCACATTATGAAAAGCATTTTAAAAGaat
tctgaaaaaataaaaataacga Run BLAST on NCBI transcript from alignment at sc0000080:272080..278207- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007897 ID=TCONS_00007897|Name=TCONS_00007897|organism=Clytia hemisphaerica|type=transcript|length=6128bp|location=Sequence derived from alignment at sc0000080:272080..278207- (Clytia hemisphaerica)
TCCTACTCCAACAACTAAACAAAAACACAAGGGAATTAACGTCAAAATGT
GCTAAATGTTTCTTGAAAAAAAGTCTTTGAATTTCTTATAGTGAGTTGTT
GAGAGTGTGTTCTGAATGGTGATTTATTCGTCATTGAGAACAAGTCTCAA
AAGAAGCCGCAAAAAAAGAAAGAATGATATTTAGAGTGCAAAACATAAAA
CGAAGAACAGATTGTGAATCAAGTGGGATAACATATTGATAAATAATGCA
CGAGGAATTCTGGTCAACAACTAAAGAAAATGAGGGGAAATTAATGTTCC
AATTCCATTTCTCATTTAGATTTTGACAAATGAGGAAATAAATTAAACAA
ATGGCTTGGTTTTGAGGTAAGTTCCAGTTTTGTTCTTAATGCTATTTCTG
GGAAACGAACTCTGACTAACGGTTTAGCTCATTCTGCAAGTCAGTGTGCC
ATCATATAACACTTATTCCACACTCCATAGTAGAGCCTGGGAATGAGATG
ATCATTTGCTGACGTAATAACCTAGTACATAACAAGGCCGCGAAAAATAA
TGTTTTGTCGCGACTCCAGGACTTCTTTTGATCAACTTTCGATTCGTCAC
ATGAAATTACACCGAGAAAAAGTTGGCATTTACCCAATTAGTTTGTAATG
CTGTCTTTTAATGAATTGATTAGGTGATTATCAAAGAATATTAGTAATTA
AAAGAGCTTATGTTAGCTAATGCTCCTTACGCAAGCAAGCAGAAGTAGGG
GAGATGCATGCTAAGATAAAGCCGTTTGTGACGTCATTCGTAATAAGCCA
AAGTATTCGAAGTTATCTACAATGCAAGTAATATAGCCGGAAAGTGGGGG
TAATTTGACATTTGGAATTTAAGAGAATGTTTAGGTTATCAATTCTTCCG
TTCTCGCTACACCTCTCTCATGAAGTGCAAATGCGCGAAATGCGTAATTA
CTGCAAAAACCACAGGAGGACGATTCACCTCTTGATTTCCCGTGCATCAA
ACACATCCGTTATCGCGCGTTCGTGTCAGTCAAGTCGTGTCATGAATTAA
AAATAGAAATGTGTGAAGGAGTAGAGAAAGTGAGTTGATCTCAAGTAGCA
AGCTCCGTTGCATGCTGTTTCCAAGTACGCGTTAAAATAACAAATAATAA
GCACACTTGACGTCAAGATTTAGGATGTAGCGGTTTTAAGAATCGTGCAC
TGAATGATTTTTGGAAAATGTACTTTCAATGGATTTACCAAAATAGGTAG
AGTGCCTGATTAGTATAGCTCATTAGCTGTCTCTTGAAATTAAAGAAACC
ATGAGTAATTTCATGGATACAAAACCAAGAGTTATAGCATCAATAAATGG
TTAGATCAAAACCAGTAGCAATCAAAGTAACGATTATGACCATATAAGGA
GATACTCATAAAGTTGTAATTGGCGAATGTCATCTTAAACAGAGGTTAGG
AAATAAGCAATTGAACTTTGACATTTTAACAAGAATATCGAGGATAATAA
TCTTTTGAATACGCTTCCCGTATCATTAGACAGGGAAATATTTCATACCT
CAGCATGGTAACAAGTTGAATCAGTGACATATATGCAAATTAGATGAACC
GGGTTTTTTTATTTAATAGTACGTTCGTTAATCTCAAATTTCAAGTTTGA
TATGAACTAAACTGAATCATTTTATCATCATTATACATGGATAATTATTG
AAGTGAGTTAGGCCATTCCTTTTAGTAGTAAAAATGGTCAAACTTACCTG
ATAACCACCGGATGTTACCATAGCAATAGGGATTTGTTGTTCTCTTGCTA
GCTTGAAGACGAACTCATCTCGCTGAATAACGCCCTAGAAACAAAATAAG
TGCACAATAAAAAAACTCTAATTCAGCTGATCAGACATATTCGATTTGCT
TCTTAGATACTAATCCTTAGCTTTGGCGAGCTGGCTTTGAAAATCGTTAC
TGGGGAATAGGAAGTGAATATTCATATGAATATACTGTAATTCATGAAAG
TAATACTTGTTACATTTATAAAAAGGTTGGCAAATGGCTAGCGTTATTTC
AAACTCCGACAATTTGCTATTGTACTACAACACGTTTTTTATAAGAACAA
ACCATATAAGAACATAGGGCTTCGATAACCAAAATCTTAAGAACAAGTTA
AGGGCATTTTAAGGCTTTGCGGACTCTAAAACACCAATTTCTTATGAAAA
TGGACCAAAATAGTGAAATAAAGAAAATTTTTAGGCTTAAAACTCAAAAA
GTTAAGAACATCCAAAGGCTTCAAAAATCTTGGATTTTCTTATAAAAAAC
GTGTATATTTTTTCACTAATCTATTGGGGTTGAAAGAATTTAAGGAGACT
TTGATTTTGAGCATCTGCTAAAAGTTTGTTAATTACAACCAAAAGTTATT
CTGGATTTCTACATGTTGTGAGTACATATTATGAATGAAGAAAACGAGCA
ATGCGTTCACAGGGAAGGCGGGCACGTATATTTAACATGAAGTAGGTTGT
TGGAACAGTTTTACTGGGTAGTCAGATGTTGAATGGCGCCTTGCACACAG
CAAGTCAGATTTATCAAAATAGAAAAGAGTAGAGCAGAGAATCTTATCAA
ACATTTCTAATTAAAACTGATTATTTTCCAAAACACTACAAGGCGAGATC
GTCCTTTTTATTACTGTAAGAATAAATTGGAGAGCTGTGTTTTTGTATTT
TGAACCAGCGCGAGTCTGACGTCAAAAACTGAGGTCGTGTAAGACGATCA
CTTCGAAAGCAAATAATAATTAGAGAAAGAACAGAAATAAGAAACGTTCA
AACGAGATTGAATAAATAACACCCTAGTGTCTTTTGCGTTTTACTGTTCA
ACATCTCGTTACGTTTCATTGGAAATTTTCTGCTGGAAAATATTCTATTA
GCAAACCAGCTTGAAGAAAAGAGAAGCTTTGAATTTCTTCTTCTTCTGAG
CGACTTTGTTTTGAGAGGCAGGTGGCTTAGACGTGAACAACATTCCCTTA
GCCTGTACTCGTTCGCCTACGTGTAAAGGTAAACACAAAAAGATTATTTT
GATAAAAAGATATGTCTTGTATGGTAAACAAGTAGTCGGTAGATAGCTTT
GAGGTCGTGATAAAGTGCACGGATTTTTCTTCTTTCATAATTGGAAGGCC
ATTATTTTGGCCTATGGTACTTCTAAAGGCAGGGTGATCTCTTATGCAAT
GAATTCGAACGAGGAAAATGCCTCTGGATATTGAAGGGAAAATACAACCA
CTATTAAGATTTTTATGAATTATGCTCTTTCGCAATACAAATGAAGTCAT
CACCTATTAATTTGACAGTCACGTGCTCTTAGCCAGTAAAATTTCCTCTT
CTAGCTAATAATGGAGAGAAAAGAGAAAAATGGCGGTATCACTATAAGCG
ATGTTGATTAGCATTGTTACTTTTTTTAATAAGAAACTTTAATAATCAAT
TCTATTGTTGTTTGACGGAAGCGACTGATTGTTTGATTATAATAGGGGGT
TGTCATCACTCACTGTGTGGAGATAAATAGAGTTGTAAGAGAAAAATTCA
TCACCATTTATAATCTCAATCACCTCTTGTAGGTTAAGAAAGCAACATTC
AAACCAACCAAGAAAGAATCATCAAAACTCAGACAGAAGAAATGCAGACA
CATCGTAGAACACGAAAGTTGAGCACACGTTCACAACAATTGATCAATAC
ACTTTATGAATCAGGCGCAGACAGCGGATTGGACAGTTCAGGAGAAGAGA
GCACTCATAGCAGGTAAGAGAAAAAAAGATGAAATTGCTTTGTTTTGCGG
AACAATAATGAATAGGCCCTCACTGTTAAGCTTAAGTTGCATAACCTGTC
TCGAATTCGTTCCAAAAAATTGATGTGAATTTCGCGGTAGGGGGAATAAG
GCAAGGACTTTCCATGTTTCAAATATACACCTCTGCTAAGTAGCAAATTA
TATCAGGGCAATAATAAAAACGATTTATAGCTGGATTAAACAATTATGTA
TTCTACTTATCAAATAAGGATAAATTGTGAAACATAGTATTCATTCTTGG
ATGAGGAAGGGCTAAAAATAGCCTGATATAAACAAAAATATGATTATCTA
ACAGTTTTTGTTTGCAAAAATATGTTGGTCACGAGTCATATAAAGTCTAA
TTAGGGGATCAAGGCGAAAATTATGGTTGTTATGAATCCCGACCAATCAC
ATTACTCAGGTCCATGGAATGCAAGATAAAATGTTTGAAGGCATATAAAA
GATCTTATTTCGTCAATTTTTTGTGGCAAGGATGACAATAAGGGGATATT
GATTTGTCCTATATACAAATAATCAAAAAAATTGTCATCATTTTTGTGCC
TAGTTCTGACTGTATAACAGTTTATTTGAAATCTGATACTGTACACAAGT
ATCAATTTGTAGAAGATCTGAAGCAACAAGAATATTACATCTCACTAGTA
ATGAAAAAGGGTTTTAAGGAAAGTCCTTGTTTTTAATATCCAACAATAGC
CTGTGGTTTGTTTTAATTTATGCAGCTCAATAATCTATTGTGAAGATGTT
TGCATAAATTAACATGAATTAACCATTCCATTTTCTTTTTACTTTCGTTT
TAGCGAGGAGATATCAGAGCTATATTTCATAACAGACTCAACAGTCAACA
TGAGGGCCTTCAACGAGCTGGACACCAACATCGAGCAATTACGTAAAGAA
ATCATACGCGCTTGCGACAATTTGGTTCGAGCGGTCGAACAACGCAAGGA
AGCATTACTACAACACGTAGAAAACATTCGAAATGAAAAAGCAGAAAATC
TGAAAGCTGAGAAAGACAATTTGAACTATTTGAAACCAAGTATGTTGGAT
ATGGGAAGTTGTTTAAGATTTGTTGTGGATGAAGCTAGAGAAGATACTTC
CCTTTACAATATGATCCATGAGTATGGATGCATTGATGAAGGCAGAGCAT
CTGCTTCAAAGTCAGGAGCCAAAGGGATCGGACTTCGATTCGCTATAGCA
GACGAAGCCACACAATTTGAACTTATTACACGCAATAATTGCGGTGAAAC
CAGTTGGGTTGAACAAGACCAAGTTGATGTTACAATCAAGAAAGAAAATA
TTCATCAAAAGTGCGGTGTTAAAAATAACTGTAATGGTTCTTATAATGTC
TTCTATGAATTACATGAACCAGGACTCTATGAAATCCATGTTAAAGTGAA
CGGATGTCATGTTCCAGATTCTCCATTCCGCTGCAACGTCTTCGAGAAAC
ACAACGTCAGTTTCTTAGACGACACTCAAGATGAATGGACCTTTCAGAAT
GGTGAAAAATCGGCTCTCTTTGAAAAGAATGAGCACCAGCATACTTCAAA
ATTATACTCCAAAGACAATACCTCAGCACGTGCGTGGAAAGTACGCGTCA
ATACCGCTTGTCCGAAAATCAAAGTCAAATTCGGATATTCAAATCACACT
AAACTGATTCCGGACTTGACAGAAGAATATTTTTGTAAATTTGATTTGAA
CGATTTATTGGGCAATGATTATTCAACCAGTATTCCTAACCATCACACGT
ATGCGGATAGCCATTACCACAAGCACAACCGCCGTACAAAACACGGGAAG
ACGCGGGAACGTAAGCAATCTACGTATCACCGTTCATCTCTCAATTTCGT
CATTTTCCAAGACACAACTGAAAAATTGATCCACGTTGCGGCCGAGGGGA
CTGAGCACGAGAAAACGACCTCTTTTAAAGGGGATTTACAAAAATTAGTG
CCTTTCATTGGCATCAAGCACTTCTGTAAGAACTCTAACTGCCCAAGACC
GCAACTTGTTTTTGCGTAGGCTGTTGTCATCAAAATGAACCAAATCAAAA
CAATTTTTATATAAATATTTGTAGATAAAATTTTAATTTTTTTTTGGATC
ATTGCCGATCAGTAAATAGAAATTCTTATGAAAATTTATGAAAAGTTCTT
TTTTAAATAGAAAGCCTCTACTTCATGCCGTAATATTGTACTTTATTTAG
AAATTTTATGATGTAAATAAACTTGTATATATGAATAATCTAAAAAGTGA
AGAATATTTGTAATATAAAAACCCATATCACATTATGAAAAGCATTTTAA
AAGAATTCTGAAAAAATAAAAATAACGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007897-exon-sc0000080-1575043694:277842..278207 | TCONS_00007897-exon-sc0000080-1575043694:277842..278207 | Clytia hemisphaerica | exon |
| TCONS_00007897-exon-sc0000080-1575043694:274445..274625 | TCONS_00007897-exon-sc0000080-1575043694:274445..274625 | Clytia hemisphaerica | exon |
| TCONS_00007897-exon-sc0000080-1575043694:272080..273604 | TCONS_00007897-exon-sc0000080-1575043694:272080..273604 | Clytia hemisphaerica | exon |
| TCONS_00007897-exon-sc0000080-1510915933:277842..278207 | TCONS_00007897-exon-sc0000080-1510915933:277842..278207 | Clytia hemisphaerica | exon |
| TCONS_00007897-exon-sc0000080-1510915933:274445..274625 | TCONS_00007897-exon-sc0000080-1510915933:274445..274625 | Clytia hemisphaerica | exon |
| TCONS_00007897-exon-sc0000080-1510915933:272080..273604 | TCONS_00007897-exon-sc0000080-1510915933:272080..273604 | Clytia hemisphaerica | exon |
| TCONS_00007897-exon-sc0000080-1491911889:277842..278207 | TCONS_00007897-exon-sc0000080-1491911889:277842..278207 | Clytia hemisphaerica | exon |
| TCONS_00007897-exon-sc0000080-1491911889:274445..274625 | TCONS_00007897-exon-sc0000080-1491911889:274445..274625 | Clytia hemisphaerica | exon |
| TCONS_00007897-exon-sc0000080-1491911889:272080..273604 | TCONS_00007897-exon-sc0000080-1491911889:272080..273604 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000080 | supercontig | sc0000080:272080..278207 - |
Blast
The following BLAST results are available for this feature:
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