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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007896 ID=TCONS_00007896|Name=TCONS_00007896|organism=Clytia hemisphaerica|type=transcript|length=1960bp
GAAAGAACAGAAATAAGAAACGTTCAAACGAGATTGAATAAATAACACCC
TAGTGTCTTTTGCGTTTTACTGTTCAACATCTCGTTACGTTTCATTGGAA
ATTTTCTGCTGGAAAATATTCTATTAGCAAACCAGCTTGAAGAAAAGAGA
agctttgaatttcttcttcttctgagCGACTTTGTTTTGAGAGGCAGGTG
GCTTAGACGTGAACAACATTCCCTTAGCCTGTACTCGTTCGCCTACGTgt
aaagGTTAAGAAAGCAACATTCAAACCAACCAAGAAAGAATCATCAAAAC
TCAGACAGAAGAAATGCAGACACATCGTAGAACACGAAAGTTGAGCACAC
GTTCACAACAATTGATCAATACACTTTATGAATCAGGCGCAGACAGCGGA
TTGGACAGTTCAGGAGAAGAGAGCACTCATAGCAGCGAGGAGATATCAGA
GCTATATTTCATAACAGACTCAACAGTCAACATGAGGGCCTTCAACGAGC
TGGACACCAACATCGAGCAATTACGTAAAGAAATCATACGCGCTTGCGAC
AATTTGGTTCGAGCGGTCGAACAACGCAAGGAAGCATTACTACAACACgt
agaaaacattcgaaatgaAAAAGCAGAAAATCTGAAAGCTGAGAAAGACA
ATTTGAACTATTTGAAACCAAGTATGTTGGATATGGGAAGTTGTTTAAGA
TTTGTTGTGGATGAAGCTAGAGAAGATACTTCCCTTTACAATATGATCCA
TGAGTATGGATGCATTGATGAAGGCAGAGCATCTGCTTCAAAGTCAGGAG
CCAAAGGGATCGGACTTCGATTCGCTATAGCAGACGAAGCCACACAATTT
GAACTTATTACACGCAATAATTGCGGTGAAACCAGTTGGGTTGAACAAGA
CCAAGTTGATGTTACaatcaagaaagaaaatattcatCAAAAGTGCGGTG
TTAAAAATAACTGTAATGGTTCTTATAATGTCTTCTATGAATTACATGAA
CCAGGACTCTATGAAATCCATGTTAAAGTGAACGGATGTCATGTTCCAGA
TTCTCCATTCCGCTGCAACGTCTTCGAGAAACACAACGTCAGTTTCTTAG
ACGACACTCAAGATGAATGGACCTTTCAGAATGGTGAAAAATCGGCTCTC
TTTGAAAAGAATGAGCACCAGCATACTTCAAAATTATACTCCAAAGACAA
TACCTCAGCACGTGCGTGGAAAGTACGCGTCAATACCGCTTGTccgaaaa
tcaaagtcaaattcGGATATTCAAATCACACTAAACTGATTCCGGACTTG
acagaagaatatttttgtaaatttgatttgAACGATTTATTGGGCAATGA
TTATTCAACCAGTATTCCTAACCATCACACGTATGCGGATAGCCATTACC
ACAAGCACAACCGCCGTACAAAACACGGGAAGACGCGGGAACGTAAGCAA
TCTACGTATCACCGTTCATCTCTCAATTTCGTCATTTTCCAAGACACAAC
TGAAAAATTGATCCACGTTGCGGCCGAGGGGACTGAGCACGAGAAAACGA
CCTCTTTTAAAGGGGATTTACAAAAATTAGTGCCTTTCATTGGCATCAAG
CACTTCTGTAAGAACTCTAACTGCCCAAGACCGCAACTTGTTTTTGCGTA
GGCTGTTGTCATCAAAATGaaccaaatcaaaacaatttttatataaatat
ttgtagataaaattttaatttttttttggatcatTGCCGATCAGTAAATA
GAAATTCTtatgaaaatttatgaaaagttcttttttaaatagaaaGCCTC
TACTTCATGCCGTAATATTGTactttatttagaaattttatgatGTAAAT
AAACTTGTATATATGAATAATCTAAAAAGTGAAGAATATTTGTAATATAA
AAACCCATATCACATTATGAAAAGCATTTTAAAAGaattctgaaaaaata
aaaataacga Run BLAST on NCBI protein sequence of Tripartite motif containing protein >TCONS_00007896-protein ID=TCONS_00007896-protein|Name=Tripartite motif containing protein|organism=Clytia hemisphaerica|type=polypeptide|length=445bp
MQTHRRTRKLSTRSQQLINTLYESGADSGLDSSGEESTHSSEEISELYFI
TDSTVNMRAFNELDTNIEQLRKEIIRACDNLVRAVEQRKEALLQHVENIR
NEKAENLKAEKDNLNYLKPSMLDMGSCLRFVVDEAREDTSLYNMIHEYGC
IDEGRASASKSGAKGIGLRFAIADEATQFELITRNNCGETSWVEQDQVDV
TIKKENIHQKCGVKNNCNGSYNVFYELHEPGLYEIHVKVNGCHVPDSPFR
CNVFEKHNVSFLDDTQDEWTFQNGEKSALFEKNEHQHTSKLYSKDNTSAR
AWKVRVNTACPKIKVKFGYSNHTKLIPDLTEEYFCKFDLNDLLGNDYSTS
IPNHHTYADSHYHKHNRRTKHGKTRERKQSTYHRSSLNFVIFQDTTEKLI
HVAAEGTEHEKTTSFKGDLQKLVPFIGIKHFCKNSNCPRPQLVFA Run BLAST on NCBI transcript from alignment at sc0000080:272080..275433- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007896 ID=TCONS_00007896|Name=TCONS_00007896|organism=Clytia hemisphaerica|type=transcript|length=3354bp|location=Sequence derived from alignment at sc0000080:272080..275433- (Clytia hemisphaerica)
GAAAGAACAGAAATAAGAAACGTTCAAACGAGATTGAATAAATAACACCC
TAGTGTCTTTTGCGTTTTACTGTTCAACATCTCGTTACGTTTCATTGGAA
ATTTTCTGCTGGAAAATATTCTATTAGCAAACCAGCTTGAAGAAAAGAGA
AGCTTTGAATTTCTTCTTCTTCTGAGCGACTTTGTTTTGAGAGGCAGGTG
GCTTAGACGTGAACAACATTCCCTTAGCCTGTACTCGTTCGCCTACGTGT
AAAGGTAAACACAAAAAGATTATTTTGATAAAAAGATATGTCTTGTATGG
TAAACAAGTAGTCGGTAGATAGCTTTGAGGTCGTGATAAAGTGCACGGAT
TTTTCTTCTTTCATAATTGGAAGGCCATTATTTTGGCCTATGGTACTTCT
AAAGGCAGGGTGATCTCTTATGCAATGAATTCGAACGAGGAAAATGCCTC
TGGATATTGAAGGGAAAATACAACCACTATTAAGATTTTTATGAATTATG
CTCTTTCGCAATACAAATGAAGTCATCACCTATTAATTTGACAGTCACGT
GCTCTTAGCCAGTAAAATTTCCTCTTCTAGCTAATAATGGAGAGAAAAGA
GAAAAATGGCGGTATCACTATAAGCGATGTTGATTAGCATTGTTACTTTT
TTTAATAAGAAACTTTAATAATCAATTCTATTGTTGTTTGACGGAAGCGA
CTGATTGTTTGATTATAATAGGGGGTTGTCATCACTCACTGTGTGGAGAT
AAATAGAGTTGTAAGAGAAAAATTCATCACCATTTATAATCTCAATCACC
TCTTGTAGGTTAAGAAAGCAACATTCAAACCAACCAAGAAAGAATCATCA
AAACTCAGACAGAAGAAATGCAGACACATCGTAGAACACGAAAGTTGAGC
ACACGTTCACAACAATTGATCAATACACTTTATGAATCAGGCGCAGACAG
CGGATTGGACAGTTCAGGAGAAGAGAGCACTCATAGCAGGTAAGAGAAAA
AAAGATGAAATTGCTTTGTTTTGCGGAACAATAATGAATAGGCCCTCACT
GTTAAGCTTAAGTTGCATAACCTGTCTCGAATTCGTTCCAAAAAATTGAT
GTGAATTTCGCGGTAGGGGGAATAAGGCAAGGACTTTCCATGTTTCAAAT
ATACACCTCTGCTAAGTAGCAAATTATATCAGGGCAATAATAAAAACGAT
TTATAGCTGGATTAAACAATTATGTATTCTACTTATCAAATAAGGATAAA
TTGTGAAACATAGTATTCATTCTTGGATGAGGAAGGGCTAAAAATAGCCT
GATATAAACAAAAATATGATTATCTAACAGTTTTTGTTTGCAAAAATATG
TTGGTCACGAGTCATATAAAGTCTAATTAGGGGATCAAGGCGAAAATTAT
GGTTGTTATGAATCCCGACCAATCACATTACTCAGGTCCATGGAATGCAA
GATAAAATGTTTGAAGGCATATAAAAGATCTTATTTCGTCAATTTTTTGT
GGCAAGGATGACAATAAGGGGATATTGATTTGTCCTATATACAAATAATC
AAAAAAATTGTCATCATTTTTGTGCCTAGTTCTGACTGTATAACAGTTTA
TTTGAAATCTGATACTGTACACAAGTATCAATTTGTAGAAGATCTGAAGC
AACAAGAATATTACATCTCACTAGTAATGAAAAAGGGTTTTAAGGAAAGT
CCTTGTTTTTAATATCCAACAATAGCCTGTGGTTTGTTTTAATTTATGCA
GCTCAATAATCTATTGTGAAGATGTTTGCATAAATTAACATGAATTAACC
ATTCCATTTTCTTTTTACTTTCGTTTTAGCGAGGAGATATCAGAGCTATA
TTTCATAACAGACTCAACAGTCAACATGAGGGCCTTCAACGAGCTGGACA
CCAACATCGAGCAATTACGTAAAGAAATCATACGCGCTTGCGACAATTTG
GTTCGAGCGGTCGAACAACGCAAGGAAGCATTACTACAACACGTAGAAAA
CATTCGAAATGAAAAAGCAGAAAATCTGAAAGCTGAGAAAGACAATTTGA
ACTATTTGAAACCAAGTATGTTGGATATGGGAAGTTGTTTAAGATTTGTT
GTGGATGAAGCTAGAGAAGATACTTCCCTTTACAATATGATCCATGAGTA
TGGATGCATTGATGAAGGCAGAGCATCTGCTTCAAAGTCAGGAGCCAAAG
GGATCGGACTTCGATTCGCTATAGCAGACGAAGCCACACAATTTGAACTT
ATTACACGCAATAATTGCGGTGAAACCAGTTGGGTTGAACAAGACCAAGT
TGATGTTACAATCAAGAAAGAAAATATTCATCAAAAGTGCGGTGTTAAAA
ATAACTGTAATGGTTCTTATAATGTCTTCTATGAATTACATGAACCAGGA
CTCTATGAAATCCATGTTAAAGTGAACGGATGTCATGTTCCAGATTCTCC
ATTCCGCTGCAACGTCTTCGAGAAACACAACGTCAGTTTCTTAGACGACA
CTCAAGATGAATGGACCTTTCAGAATGGTGAAAAATCGGCTCTCTTTGAA
AAGAATGAGCACCAGCATACTTCAAAATTATACTCCAAAGACAATACCTC
AGCACGTGCGTGGAAAGTACGCGTCAATACCGCTTGTCCGAAAATCAAAG
TCAAATTCGGATATTCAAATCACACTAAACTGATTCCGGACTTGACAGAA
GAATATTTTTGTAAATTTGATTTGAACGATTTATTGGGCAATGATTATTC
AACCAGTATTCCTAACCATCACACGTATGCGGATAGCCATTACCACAAGC
ACAACCGCCGTACAAAACACGGGAAGACGCGGGAACGTAAGCAATCTACG
TATCACCGTTCATCTCTCAATTTCGTCATTTTCCAAGACACAACTGAAAA
ATTGATCCACGTTGCGGCCGAGGGGACTGAGCACGAGAAAACGACCTCTT
TTAAAGGGGATTTACAAAAATTAGTGCCTTTCATTGGCATCAAGCACTTC
TGTAAGAACTCTAACTGCCCAAGACCGCAACTTGTTTTTGCGTAGGCTGT
TGTCATCAAAATGAACCAAATCAAAACAATTTTTATATAAATATTTGTAG
ATAAAATTTTAATTTTTTTTTGGATCATTGCCGATCAGTAAATAGAAATT
CTTATGAAAATTTATGAAAAGTTCTTTTTTAAATAGAAAGCCTCTACTTC
ATGCCGTAATATTGTACTTTATTTAGAAATTTTATGATGTAAATAAACTT
GTATATATGAATAATCTAAAAAGTGAAGAATATTTGTAATATAAAAACCC
ATATCACATTATGAAAAGCATTTTAAAAGAATTCTGAAAAAATAAAAATA
ACGA Coding sequence (CDS) from alignment at sc0000080:272080..275433- >TCONS_00007896 ID=TCONS_00007896|Name=TCONS_00007896|organism=Clytia hemisphaerica|type=CDS|length=2676bp|location=Sequence derived from alignment at sc0000080:272080..275433- (Clytia hemisphaerica)
CGAGGAGATATCAGAGCTATATTTCATAACAGACTCAACAGTCAACATGA
GGGCCTTCAACGAGCTGGACACCAACATCGAGCAATTACGTAAAGAAATC
ATACGCGCTTGCGACAATTTGGTTCGAGCGGTCGAACAACGCAAGGAAGC
ATTACTACAACACGTAGAAAACATTCGAAATGAAAAAGCAGAAAATCTGA
AAGCTGAGAAAGACAATTTGAACTATTTGAAACCAAGTATGTTGGATATG
GGAAGTTGTTTAAGATTTGTTGTGGATGAAGCTAGAGAAGATACTTCCCT
TTACAATATGATCCATGAGTATGGATGCATTGATGAAGGCAGAGCATCTG
CTTCAAAGTCAGGAGCCAAAGGGATCGGACTTCGATTCGCTATAGCAGAC
GAAGCCACACAATTTGAACTTATTACACGCAATAATTGCGGTGAAACCAG
TTGGGTTGAACAAGACCAAGTTGATGTTACAATCAAGAAAGAAAATATTC
ATCAAAAGTGCGGTGTTAAAAATAACTGTAATGGTTCTTATAATGTCTTC
TATGAATTACATGAACCAGGACTCTATGAAATCCATGTTAAAGTGAACGG
ATGTCATGTTCCAGATTCTCCATTCCGCTGCAACGTCTTCGAGAAACACA
ACGTCAGTTTCTTAGACGACACTCAAGATGAATGGACCTTTCAGAATGGT
GAAAAATCGGCTCTCTTTGAAAAGAATGAGCACCAGCATACTTCAAAATT
ATACTCCAAAGACAATACCTCAGCACGTGCGTGGAAAGTACGCGTCAATA
CCGCTTGTCCGAAAATCAAAGTCAAATTCGGATATTCAAATCACACTAAA
CTGATTCCGGACTTGACAGAAGAATATTTTTGTAAATTTGATTTGAACGA
TTTATTGGGCAATGATTATTCAACCAGTATTCCTAACCATCACACGTATG
CGGATAGCCATTACCACAAGCACAACCGCCGTACAAAACACGGGAAGACG
CGGGAACGTAAGCAATCTACGTATCACCGTTCATCTCTCAATTTCGTCAT
TTTCCAAGACACAACTGAAAAATTGATCCACGTTGCGGCCGAGGGGACTG
AGCACGAGAAAACGACCTCTTTTAAAGGGGATTTACAAAAATTAGTGCCT
TTCATTGGCATCAAGCACTTCTGTAAGAACTCTAACTGCCCAAGACCGCA
ACTTGTTTTTGCGTAGATGCAGACACATCGTAGAACACGAAAGTTGAGCA
CACGTTCACAACAATTGATCAATACACTTTATGAATCAGGCGCAGACAGC
GGATTGGACAGTTCAGGAGAAGAGAGCACTCATAGCAGCGAGGAGATATC
AGAGCTATATTTCATAACAGACTCAACAGTCAACATGAGGGCCTTCAACG
AGCTGGACACCAACATCGAGCAATTACGTAAAGAAATCATACGCGCTTGC
GACAATTTGGTTCGAGCGGTCGAACAACGCAAGGAAGCATTACTACAACA
CGTAGAAAACATTCGAAATGAAAAAGCAGAAAATCTGAAAGCTGAGAAAG
ACAATTTGAACTATTTGAAACCAAGTATGTTGGATATGGGAAGTTGTTTA
AGATTTGTTGTGGATGAAGCTAGAGAAGATACTTCCCTTTACAATATGAT
CCATGAGTATGGATGCATTGATGAAGGCAGAGCATCTGCTTCAAAGTCAG
GAGCCAAAGGGATCGGACTTCGATTCGCTATAGCAGACGAAGCCACACAA
TTTGAACTTATTACACGCAATAATTGCGGTGAAACCAGTTGGGTTGAACA
AGACCAAGTTGATGTTACAATCAAGAAAGAAAATATTCATCAAAAGTGCG
GTGTTAAAAATAACTGTAATGGTTCTTATAATGTCTTCTATGAATTACAT
GAACCAGGACTCTATGAAATCCATGTTAAAGTGAACGGATGTCATGTTCC
AGATTCTCCATTCCGCTGCAACGTCTTCGAGAAACACAACGTCAGTTTCT
TAGACGACACTCAAGATGAATGGACCTTTCAGAATGGTGAAAAATCGGCT
CTCTTTGAAAAGAATGAGCACCAGCATACTTCAAAATTATACTCCAAAGA
CAATACCTCAGCACGTGCGTGGAAAGTACGCGTCAATACCGCTTGTCCGA
AAATCAAAGTCAAATTCGGATATTCAAATCACACTAAACTGATTCCGGAC
TTGACAGAAGAATATTTTTGTAAATTTGATTTGAACGATTTATTGGGCAA
TGATTATTCAACCAGTATTCCTAACCATCACACGTATGCGGATAGCCATT
ACCACAAGCACAACCGCCGTACAAAACACGGGAAGACGCGGGAACGTAAG
CAATCTACGTATCACCGTTCATCTCTCAATTTCGTCATTTTCCAAGACAC
AACTGAAAAATTGATCCACGTTGCGGCCGAGGGGACTGAGCACGAGAAAA
CGACCTCTTTTAAAGGGGATTTACAAAAATTAGTGCCTTTCATTGGCATC
AAGCACTTCTGTAAGAACTCTAACTGCCCAAGACCGCAACTTGTTTTTGC
GTAGATGCAGACACATCGTAGAACACGAAAGTTGAGCACACGTTCACAAC
AATTGATCAATACACTTTATGAATCAGGCGCAGACAGCGGATTGGACAGT
TCAGGAGAAGAGAGCACTCATAGCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007896-exon-sc0000080-1575043694:275180..275433 | TCONS_00007896-exon-sc0000080-1575043694:275180..275433 | Clytia hemisphaerica | exon |
| TCONS_00007896-exon-sc0000080-1575043694:274445..274625 | TCONS_00007896-exon-sc0000080-1575043694:274445..274625 | Clytia hemisphaerica | exon |
| TCONS_00007896-exon-sc0000080-1575043694:272080..273604 | TCONS_00007896-exon-sc0000080-1575043694:272080..273604 | Clytia hemisphaerica | exon |
| TCONS_00007896-exon-sc0000080-1510915933:275180..275433 | TCONS_00007896-exon-sc0000080-1510915933:275180..275433 | Clytia hemisphaerica | exon |
| TCONS_00007896-exon-sc0000080-1510915933:274445..274625 | TCONS_00007896-exon-sc0000080-1510915933:274445..274625 | Clytia hemisphaerica | exon |
| TCONS_00007896-exon-sc0000080-1510915933:272080..273604 | TCONS_00007896-exon-sc0000080-1510915933:272080..273604 | Clytia hemisphaerica | exon |
| TCONS_00007896-exon-sc0000080-1491911889:275180..275433 | TCONS_00007896-exon-sc0000080-1491911889:275180..275433 | Clytia hemisphaerica | exon |
| TCONS_00007896-exon-sc0000080-1491911889:274445..274625 | TCONS_00007896-exon-sc0000080-1491911889:274445..274625 | Clytia hemisphaerica | exon |
| TCONS_00007896-exon-sc0000080-1491911889:272080..273604 | TCONS_00007896-exon-sc0000080-1491911889:272080..273604 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000080 | supercontig | sc0000080:272080..275433 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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