TCONS_00007892 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007892
Unique NameTCONS_00007892
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2343

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007892 ID=TCONS_00007892|Name=TCONS_00007892|organism=Clytia hemisphaerica|type=transcript|length=2343bp
AAGAGATTAAATCCATGCCATGGATATCATGATTGTCGCACAGAAAGGgg
atttaacatttaacatatATATTTTTATGCTCAATAAGAGTATGTTTCTC
TTGTTTCCCTCAGTTTCATTTTCGAacgcaaaaatatcaaaaagaaaaaa
atcaaaatggcggaaaAAGCGATGATTTATTTTGCTTTTAGTGTTTTGCT
TTCCTTTCCAGCACCAAGCTCCCAGatGGCTAAAAGTCTCTTCATGCCAC
TATCAAGTCTACAAGATTTGGGATTCATTATCAAACCTCACAAAGATAAT
GTCTACAACGACATCCATAAAAGGATGGACATCAATTCGAACTCCAACAT
CGAAGTACCAATCGAGATAGCCAAACAGTTGGGACTTCTAAAACCTCCTG
GAGCAGGAGGATGCCCACCGTGTCCCAATCCTCCTTGTACTGGAGGTCCT
GCAGGATGTGATGTCAAAGCTAAGTCCATCTCAGAAGTGCAGATCAATGG
TAAAGGTGATTACAGTGCACCAGTGGGGCCAGTTTTCAGTGTTGGTGATG
CTCCACCTCCGGGTATTGTGCATCCAGAATTGTTAACACTGAATTTGAAA
GGTAAAGATGGACGCATTGGAAAACCAGGACCCAAGGGACCACCAGGAGA
TGCTGGCCCACCAGGCTCACAAGGTCCAATGGGTCCCAAAGGAGAACAAG
GTGATGAATGTATTGCATCCAAGATGCCAAAAGATAAACAATGTTCACCA
GACATCGTGAGCAACCTTCGTGCAAGATTGGAGAAAGTGGAGAAATGTGC
AACCaATACAACCTTGTTAGCAGCCATAACATTGAACGTATTGAGTACAC
TTGCAAATCAAAGACACGAAAAACCTAAGTCCATTCTCGTCAAACAAAAA
CGCCCTCCACCTCCACCACCGCCCGCTGCACCAGCCCCTCCTCCGCCTCC
TGCTCAACCTGCCGCTCCACCAGCACCCGCTAGTCCACCTTCACCTCCAT
CGCCACCCTCGGGACAGCCAGCACCTGCTGCACCACCTTGTCCTGCAGGA
CCAGGGAAATGTGACGGAAACCAAGGCAATGCCAATGTCCAATCAGATGT
CAAGATCGACCTGACAGGAGGCGCTGACAAACAACAACCAGCTTGTAAAC
GATCTGGCACATGCGCAACCGATCCGTCTAAAACAGCCAATGCATTGCAA
ACACTACAACAGCTTCTAAACCAAGCTAAagcacaacaacaacaaaatcc
tGTGGCCAAAGATTCTGCAACTGTCTTGGTGAATGGTGTACCGGTTAAAA
TACCGCTCGGGAAATAAATTGAAAGCAATGCAACTGTCATTCATTGGGCA
TCTTTCATTTGTGCTGTCTGTCTATCTAAGTAGTAAATACATTACAATAA
ATTTGTTAAATAAAAATAGCGTCTAATCgatataaaatttttattataat
tttgatatttctcaaTTCTTATGactaatcagatggtttgagatgttttt
gtttgttgaaCCTTTCTGTGAGCCCTGAGTAAAACCAAGAAATGCAAGTA
GCAAGAATTCCAGTGTAAAAAGCGTGTAAGTACCCAACTTAAAAAATTGT
GATTGAAAAAAGTGAGGTAAATTGTTTTCGGATGTTTTGCTCAGCGTCAT
GAAAGGATTCtgcagaagaaaaaaatctcaaacaatCTTTTTTATGAGTT
ATTTGACCTATACACATCACATGTAcataaatttcattttatttaaaaat
actaaatagaaaatagaaaataatgatttaaaaaatgcaaatcaaaaaag
ttttcgtAGCTTCGTTTATGTCCAAAAAGTAAACCAATGTGGTAAAACAT
ACAGCGGATACCTACCCTGTCCCAACAATATTTCAGCAGCTCAATTGTTC
GTTTGTCCGTTCAACAAGCAAGGAGCTGTCATAATTCATAATAACACCTT
ACTCTTTTGTCATGTAATCACAAAAATGAAGCAAGAAAGCAAACAACAAC
ATACAGGTATGCCTGATAGTCCATACTTGAAACAGCTATCTAAGTGAGAT
ACATTCTTCATTCCTCAtctttttcatgctctttctcACAATGTTCCTTA
GATGAGATGAAGGCTAAAGGCGCCATACCAATGATACAACCTATCACGAT
GCCAATCGCACGACCCTGAGTTGTGAAAAAATCCAACAAacaattaaagg
ttttatttttacataagtgttcccgtttcatatcaggcacatattttata
tcaggacagtgtgttgccattgttatattatgctgatataagcaaaaaat
gttgttttttcctctttctgatcaatcttgctccacatccgtg
Run BLAST on NCBI

transcript from alignment at sc0000080:239496..244685-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007892 ID=TCONS_00007892|Name=TCONS_00007892|organism=Clytia hemisphaerica|type=transcript|length=5190bp|location=Sequence derived from alignment at sc0000080:239496..244685- (Clytia hemisphaerica)
AAGAGATTAAATCCATGCCATGGATATCATGATTGTCGCACAGAAAGGGG
ATTTAACATTTAACATATATATTTTTATGCTCAATAAGAGTATGTTTCTC
TTGTTTCCCTCAGTTTCATTTTCGAACGCAAAAATATCAAAAAGAAAAAA
ATCAAAATGGCGGAAAAAGCGATGATTTATTTTGCTTTTAGTGTTTTGCT
TTCCTTTCCAGCACCAAGCTCCCAGGTAAATATATTAATCAAATTAGTTA
GAACCTCTAGAGTGTGTACCACGTCTTTAGACTTTTGTCCATAGCTCATT
GTTATAGATGGCACAACACATTATCAATTGAAAACCTTTTGAAACAAACC
ACACAAGCCCAAACCAACTAATCTTCCAAAACCATCCCATCAAATCAACT
TTTTGATTTTTCAGATGGCTAAAAGTCTCTTCATGCCACTATCAAGTCTA
CAAGATTTGGGATTCATTATCAAACCTCACAAAGATAATGTCTACAACGA
CATCCATAAAAGGATGGTAAGTTATTTATCCACAACTCCTTGGTAATCAT
AGATTGAACTTTTATCGATGTCATGCTAGGATCTCCTTATCTAGAATGTA
AAGATCTGAGATCAAACTGGCATAAAACAAGCTAATATAAATAACACTGT
TATTTTGGCATCGGATAGTGCAGACACACTGTATATATTGTGAATGTTAA
TATACTGTAATCTCCACCAAATCTAGACTTAGCTAGAGACATATCATACG
AGCTGTATTCCTTATTGAAATTACAGGACATCAATTCGAACTCCAACATC
GAAGTACCAATCGAGATAGCCAAACAGTTGGGACTTCTAAAACCTCCTGG
AGCAGGAGGATGCCCACCGTGTCCCAATCCTCCTTGTACTGGAGGTCCTG
CAGGATGTGATGTCAAAGCTAAGTCCATCTCAGAAGTGCAGATCAATGGT
AAAGGTGATTACAGTGCACCAGTGGGGCCAGTTTTCAGTGTTGGTGATGC
TCCACCTCCGGGTATTGTGCATCCAGTAAGTTCTTTTGTTCTTAATCATC
GTGAAAAAGTTAAAAAGCCATACAATGTTGGAAAATAATATCCGAGGAAA
TTAATCTACTCAGATCTTTGAAATGAAGAAAATCAAGATGTAAAATGAAA
AAAAAAATAAGAATAGGGTCAATATACTTTTTTTCATACTACACTTTAGG
AATTGTTAACACTGAATTTGAAAGGTAAAGATGGACGCATTGGAAAACCA
GGACCCAAGGGACCACCAGGAGATGCTGGNCAAGTCTACAAGATTTGGGA
TTCATTATCAAACCTCACAAAGATAATGTCTACAACGACATCCATAAAAG
GATGGTAAGTTATTTATCCACAACTCCTTGGTAATCATAGATTGAACTTT
TATCGATGTCATGCTAGGATCTCCTTATCTAGAATGTAAAGATCTGAGAT
CAAACTGGCATAAAACAAGCTAATATAAATAACACTGTTATTTTGGCATC
GGATAGTGCAGACACACTGTATATATTGTGAATGTTAATATACTGTAATC
TCCACCAAATCTAGACTTAGCTAGAGACATATCATACGAGCTGTATTCCT
TATTGAAATTACAGGACATCAATTCGAACTCCAACATCGAAGTACCAATC
GAGATAGCCAAACAGTTGGGACTTCTAAAACCTCCTGGAGCAGGAGGATG
CCCACCGTGTCCCAATCCTCCTTGTACTGGAGGTCCTGCAGGATGTGATG
TCAAAGCTAAGTCCATCTCAGAAGTGCAGATCAATGGTAAAGGTGATTAC
AGTGCACCAGTGGGGCCAGTTTTCAGTGTTGGTGATGCTCCACCTCCGGG
TATTGTGCATCCAGTAAGTTCTTTTGTTCTTAATCATCGTGAAAAAGTTA
AAAAGCCATACAATGTTGGAAAATAATATCCGAGGAAATTAATCTACTCA
GATCTTTGAAATGAAGAAAATCAAGATGTAAAATGAAAAAAAAAATAAGA
ATAGGGTCAATATACTTTTTTTCATACTACACTTTAGGAATTGTTAACAC
TGAATTTGAAAGGTAAAGATGGACGCATTGGAAAACCAGGACCCAAGGGA
CCACCAGGAGATGCTGGCCCACCAGGCTCACAAGGTCCAATGGGTCCCAA
AGGAGAACAAGGTGATGAATGTATTGCATCCAAGATGCCAAAAGATGTGA
GTTATATTTAGTGCATTCAATAAATTCCAATATTAAATTAGGCTTGCAAT
TAAGGCGATGCTATTCTGTAATGAATGTCATACTTGACATTGAAATCAAT
AAGAAGCTCAAAGGAAAGCACTGATATATACTAAAACATTTCCTTGCAGA
AACAATGTTCACCAGACATCGTGAGCAACCTTCGTGCAAGATTGGAGAAA
GTGGAGAAATGTGCAACCGTAAGTATTCATCAAGATATGTCTTCTCCTCA
AATATGGTCAGTCAAGAACCTTTTATAAAATATCCCCATTTAATCATCAA
AATTCATTGAATTAAATATAACTTTACTGCAATCGACAAGTATTTTAACT
CATACCCATATGTAATAATCACGACATTGAAGACATCATATAAAATTCAA
TTTAATCATTTTTAGAATACAACCTTGTTAGCAGCCATAACATTGAACGT
ATTGAGTACACTTGCAAATCAAAGACACGAAAAACCTAAGTCCATTCTCG
TCAAACAAAAACGCCCTCCACCTCCACCACCGCCCGCTGCACCAGCCCCT
CCTCCGCCTCCTGCTCAACCTGCCGCTCCACCAGCACCCGCTAGTCCACC
TTCACCTCCATCGCCACCCTCGGGACAGCCAGCACCTGCTGCACCACCTT
GTCCTGCAGGACCAGGGAAATGTGACGGAAACCAAGGCAGTAAGTATTAA
ATCAAGAAATATTTGTAGAAATCAAAACATAAAATTATTTCACTGTGAGT
CAAAAGGTAACCTTGTCTCCATAAAGTCTAGTCTTAAATAATAAAGCTGT
TGAAATGAATGAAGGAATAAATCCTACTACGAACCTCAGTTATATCAACT
CTCTTGAAAATGTATATCATATATTCTTTAGATGCCAATGTCCAATCAGA
TGTCAAGATCGACCTGACAGGAGGCGCTGACAAACAACAACCAGCTTGTA
AACGATCTGGCACGTGCGCAACCGATCCGTCTAAAACAGCCAATGCATTG
CAAACACTACAACAGCTTCTAAACCAAGCTAAAGCACAACAACAACAAAA
TCCTGTGGCCAAAGATTCTGCAACTGTCTTGGTGAATGGTGTACCGGTTA
AAATACCGCTCGGGAAATAAATTGAAAGCAATGCAACTGTCATTCATTGG
GCATCTTTCATTTGTGCTATCTGTCTATCTAAGTAGTAAATACATTACAA
TAAATTTGTTAAATAAAAATAGCGTCTAATCGATATAAAATTTTTATTAT
AATTTTGATATTTCTCAATTCTTATGAATAATCAGATGGTTTGAGATGTT
TTTGTTTGTTGAACCTTTCTGTGAGCCCTGAGTAAAACCAAGAAATGCAA
GTAGCAAGAATTCCAGTGTAAAAAGCGTGTAAGTACCCAACTTAAAAAAT
TGTGATTGAAAAAAGTGAGGTAAATTGTTTTCGGATGTTTTGCTCAGCGT
CATGAAAGGATTCTGCAGAAGAAAAAANACTGCTGCACCACCTTGTCCTG
CAGGACCAGGGAAATGTGACGGAAATCAAGGCAGTAAGTATTAAATCAGG
AAATATTTGTAGAAATCAAAACATAAAATTATTTCACTGTGAGTCAAAAG
GTAACCTTTTCTCCATAAAGTCTAGTCTTAAATAAGAAAGCTATTGAAAT
GAATGAAGGAATAAATCCTACTACGGACCTCAGTTATATCAACTCTCTTG
AAAATGTATATCATATATTCTTTAGATGCCAATGTCCAATCAGATGTCAA
GATCGACCTGACAGGAGGCGCTGACAAACAACAACCAGCTTGTAAACGAT
CTGGCACATGCGCAACCGATCCGTCTAAAACAGCCAATGCATTGCAAACA
CTACAACAGCTTCTAAACCAAGCTAAAGCACAACAACAACAAAATCCTGT
GGCCAAAGATTCTGCAACTGTCTTGGTGAATGGTGTACCGGTTAAAATAC
CGCTCGGGAAATAAATTGAAAGCAATGCAACTGTCATTCATTGGGCATCT
TTCATTTGTGCTGTCTGTCTATCTAAGTAGTAAATACATTACAATAAATT
TGTTAAATAAAAATAGCGTCTAATCGATATAAAATTTTTATTATAATTTT
GATATTTCTCAATTCTTATGACTAATCAGATGGTTTGAGATGTTTTTGTT
TGTTGAACCTTTCTGTGAGCCCTGAGTAAAACCAAGAAATGCAAGTAGCA
AGAATTCCAGTGTAAAAAGCGTGTAAGTACCCAACTTAAAAAATTGTGAT
TGAAAAAAGTGAGGTAAATTGTTTTCGGATGTTTTGCTCAGCGTCATGAA
AGGATTCTGCAGAAGAAAAAAATCTCAAACAATCTTTTTTATGAGTTATT
TGACCTATACACATCACATGTACATAAATTTCATTTTATTTAAAAATACT
AAATAGAAAATAGAAAATAATGATTTAAAAAATGCAAATCAAAAAAGTTT
TCGTAGCTTCGTTTATGTCCAAAAAGTAAACCAATGTGGTAAAACATACA
GCGGATACCTACCCTGTCCCAACAATATTTCAGCAGCTCAATTGTTCGTT
TGTCCGTTCAACAAGCAAGGAGCTGTCATAATTCATAATAACACCTTACT
CTTTTGTCATGTAATCACAAAAATGAAGCAAGAAAGCAAACAACAACATA
CAGGTATGCCTGATAGTCCATACTTGAAACAGCTATCTAAGTGAGATACA
TTCTTCATTCCTCATCTTTTTCATGCTCTTTCTCACAATGTTCCTTAGAT
GAGATGAAGGCTAAAGGCGCCATACCAATGATACAACCTATCACGATGCC
AATCGCACGACCCTGAGTTGTGAAAAAATCCAACAAACAATTAAAGGTTT
TATTTTTACATAAGTGTTCCCGTTTCATATCAGGCACATATTTTATATCA
GGACAGTGTGTTGCCATTGTTATATTATGCTGATATAAGCAAAAAATGTT
GTTTTTTCCTCTTTCTGATCAATCTTGCTCCACATCCGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004463XLOC_004463Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007892-exon-sc0000080-1575043694:244461..244685TCONS_00007892-exon-sc0000080-1575043694:244461..244685Clytia hemisphaericaexon
TCONS_00007892-exon-sc0000080-1575043694:244170..244271TCONS_00007892-exon-sc0000080-1575043694:244170..244271Clytia hemisphaericaexon
TCONS_00007892-exon-sc0000080-1575043694:243661..243909TCONS_00007892-exon-sc0000080-1575043694:243661..243909Clytia hemisphaericaexon
TCONS_00007892-exon-sc0000080-1575043694:242490..242648TCONS_00007892-exon-sc0000080-1575043694:242490..242648Clytia hemisphaericaexon
TCONS_00007892-exon-sc0000080-1575043694:242268..242336TCONS_00007892-exon-sc0000080-1575043694:242268..242336Clytia hemisphaericaexon
TCONS_00007892-exon-sc0000080-1575043694:241797..242070TCONS_00007892-exon-sc0000080-1575043694:241797..242070Clytia hemisphaericaexon
TCONS_00007892-exon-sc0000080-1575043694:239496..240760TCONS_00007892-exon-sc0000080-1575043694:239496..240760Clytia hemisphaericaexon
TCONS_00007892-exon-sc0000080-1510915933:244461..244685TCONS_00007892-exon-sc0000080-1510915933:244461..244685Clytia hemisphaericaexon
TCONS_00007892-exon-sc0000080-1510915933:244170..244271TCONS_00007892-exon-sc0000080-1510915933:244170..244271Clytia hemisphaericaexon
TCONS_00007892-exon-sc0000080-1510915933:243661..243909TCONS_00007892-exon-sc0000080-1510915933:243661..243909Clytia hemisphaericaexon
TCONS_00007892-exon-sc0000080-1510915933:242490..242648TCONS_00007892-exon-sc0000080-1510915933:242490..242648Clytia hemisphaericaexon
TCONS_00007892-exon-sc0000080-1510915933:242268..242336TCONS_00007892-exon-sc0000080-1510915933:242268..242336Clytia hemisphaericaexon
TCONS_00007892-exon-sc0000080-1510915933:241797..242070TCONS_00007892-exon-sc0000080-1510915933:241797..242070Clytia hemisphaericaexon
TCONS_00007892-exon-sc0000080-1510915933:239496..240760TCONS_00007892-exon-sc0000080-1510915933:239496..240760Clytia hemisphaericaexon
TCONS_00007892-exon-sc0000080-1491911889:244461..244685TCONS_00007892-exon-sc0000080-1491911889:244461..244685Clytia hemisphaericaexon
TCONS_00007892-exon-sc0000080-1491911889:244170..244271TCONS_00007892-exon-sc0000080-1491911889:244170..244271Clytia hemisphaericaexon
TCONS_00007892-exon-sc0000080-1491911889:243661..243909TCONS_00007892-exon-sc0000080-1491911889:243661..243909Clytia hemisphaericaexon
TCONS_00007892-exon-sc0000080-1491911889:242490..242648TCONS_00007892-exon-sc0000080-1491911889:242490..242648Clytia hemisphaericaexon
TCONS_00007892-exon-sc0000080-1491911889:242268..242336TCONS_00007892-exon-sc0000080-1491911889:242268..242336Clytia hemisphaericaexon
TCONS_00007892-exon-sc0000080-1491911889:241797..242070TCONS_00007892-exon-sc0000080-1491911889:241797..242070Clytia hemisphaericaexon
TCONS_00007892-exon-sc0000080-1491911889:239496..240760TCONS_00007892-exon-sc0000080-1491911889:239496..240760Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000080supercontigsc0000080:239496..244685 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0.470784	0	6.4145e-10	2.26673e-09	0.472421	4.46301e-05	0	0	0	0	0	0	0	0	0	0	0	1.47857	2.5473	0.180166	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007892 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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