TCONS_00007890 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007890
Unique NameTCONS_00007890
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2555

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007890 ID=TCONS_00007890|Name=TCONS_00007890|organism=Clytia hemisphaerica|type=transcript|length=2555bp
GTTTTGCTTTCCTTTCCAGCACCAAGCTCCCAGatGGCTAAAAGTCTCTT
CATGCCACTATCAAGTCTACAAGATTTGGGATTCATTATCAAACCTCACA
AAGATAATGTCTACAACGACATCCATAAAAGGATGGACATCAATTCGAAC
TCCAACATCGAAGTACCAATCGAGATAGCCAAACAGTTGGGACTTCTAAA
ACCTCCTGGAGCAGGAGGATGCCCACCGTGTCCCAATCCTCCTTGTACTG
GAGGTCCTGCAGGATGTGATGTCAAAGCTAAGTCCATCTCAGAAGTGCAG
ATCAATGGTAAAGGTGATTACAGTGCACCAGTGGGGCCAGTTTTCAGTGT
TGGTGATGCTCCACCTCCGGGTATTGTGCATCCAGAATTGTTAACACTGA
ATTTGAAAGGTAAAGATGGACGCATTGGAAAACCAGGACCCAAGGGACCA
CCAGGAGATGCTGGNCAAGTCTACAAGATTTGGGATTCATTATCAAACCT
CACAAAGATAATGTCTACAACGACATCCATAAAAGGATGGACATCAATTC
GAACTCCAACATCGAAGTACCAATCGAGATAGCCAAACAGTTGGGACTTC
TAAAACCTCCTGGAGCAGGAGGATGCCCACCGTGTCCCAATCCTCCTTGT
ACTGGAGGTCCTGCAGGATGTGATGTCAAAGCTAAGTCCATCTCAGAAGT
GCAGATCAATGGTAAAGGTGATTACAGTGCACCAGTGGGGCCAGTTTTCA
GTGTTGGTGATGCTCCACCTCCGGGTATTGTGCATCCAGAATTGTTAACA
CTGAATTTGAAAGGTAAAGATGGACGCATTGGAAAACCAGGACCCAAGGG
ACCACCAGGAGATGCTGGCCCACCAGGCTCACAAGGTCCAATGGGTCCCA
AAGGAGAACAAGGTGATGAATGTATTGCATCCAAGATGCCAAAAGATAAA
CAATGTTCACCAGACATCGTGAGCAACCTTCGTGCAAGATTGGAGAAAGT
GGAGAAATGTGCAACCaATACAACCTTGTTAGCAGCCATAACATTGAACG
TATTGAGTACACTTGCAAATCAAAGACACGAAAAACCTAAGTCCATTCTC
GTCAAACAAAAACGCCCTCCACCTCCACCACCGCCCGCTGCACCAGCCCC
TCCTCCGCCTCCTGCTCAACCTGCCGCTCCACCAGCACCCGCTAGTCCAC
CTTCACCTCCATCGCCACCCTCGGGACAGCCAGCACCTGCTGCACCACCT
TGTCCTGCAGGACCAGGGAAATGTGACGGAAACCAAGGCAATGCCAATGT
CCAATCAGATGTCAAGATCGACCTGACAGGAGGCGCTGACAAACAACAAC
CAGCTTGTAAACGATCTGGCACATGCGCAACCGATCCGTCTAAAACAGCC
AATGCATTGCAAACACTACAACAGCTTCTAAACCAAGCTAAagcacaaca
acaacaaaatcctGTGGCCAAAGATTCTGCAACTGTCTTGGTGAATGGTG
TACCGGTTAAAATACCGCTCGGGAAATAAATTGAAAGCAATGCAACTGTC
ATTCATTGGGCATCTTTCATTTGTGCTGTCTGTCTATCTAAGTAGTAAAT
ACATTACAATAAATTTGTTAAATAAAAATAGCGTCTAATCgatataaaat
ttttattataattttgatatttctcaaTTCTTATGactaatcagatggtt
tgagatgtttttgtttgttgaaCCTTTCTGTGAGCCCTGAGTAAAACCAA
GAAATGCAAGTAGCAAGAATTCCAGTGTAAAAAGCGTGTAAGTACCCAAC
TTAAAAAATTGTGATTGAAAAAAGTGAGGTAAATTGTTTTCGGATGTTTT
GCTCAGCGTCATGAAAGGATTCtgcagaagaaaaaaatctcaaacaatCT
TTTTTATGAGTTATTTGACCTATACACATCACATGTAcataaatttcatt
ttatttaaaaatactaaatagaaaatagaaaataatgatttaaaaaatgc
aaatcaaaaaagttttcgtAGCTTCGTTTATGTCCAAAAAGTAAACCAAT
GTGGTAAAACATACAGCGGATACCTACCCTGTCCCAACAATATTTCAGCA
GCTCAATTGTTCGTTTGTCCGTTCAACAAGCAAGGAGCTGTCATAATTCA
TAATAACACCTTACTCTTTTGTCATGTAATCACAAAAATGAAGCAAGAAA
GCAAACAACAACATACAGGTATGCCTGATAGTCCATACTTGAAACAGCTA
TCTAAGTGAGATACATTCTTCATTCCTCAtctttttcatgctctttctcA
CAATGTTCCTTAGATGAGATGAAGGCTAAAGGCGCCATACCAATGATACA
ACCTATCACGATGCCAATCGCACGACCCTGAGTTGTGAAAAAATCCAACA
Aacaattaaaggttttatttttacataagtgttcccgtttcatatcaggc
acatattttatatcaggacagtgtgttgccattgttatattatgctgata
taagcaaaaaatgttgttttttcctctttctgatcaatcttgctccacat
ccgtg
Run BLAST on NCBI

transcript from alignment at sc0000080:239496..244493-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007890 ID=TCONS_00007890|Name=TCONS_00007890|organism=Clytia hemisphaerica|type=transcript|length=4998bp|location=Sequence derived from alignment at sc0000080:239496..244493- (Clytia hemisphaerica)
GTTTTGCTTTCCTTTCCAGCACCAAGCTCCCAGGTAAATATATTAATCAA
ATTAGTTAGAACCTCTAGAGTGTGTACCACGTCTTTAGACTTTTGTCCAT
AGCTCATTGTTATAGATGGCACAACACATTATCAATTGAAAACCTTTTGA
AACAAACCACACAAGCCCAAACCAACTAATCTTCCAAAACCATCCCATCA
AATCAACTTTTTGATTTTTCAGATGGCTAAAAGTCTCTTCATGCCACTAT
CAAGTCTACAAGATTTGGGATTCATTATCAAACCTCACAAAGATAATGTC
TACAACGACATCCATAAAAGGATGGTAAGTTATTTATCCACAACTCCTTG
GTAATCATAGATTGAACTTTTATCGATGTCATGCTAGGATCTCCTTATCT
AGAATGTAAAGATCTGAGATCAAACTGGCATAAAACAAGCTAATATAAAT
AACACTGTTATTTTGGCATCGGATAGTGCAGACACACTGTATATATTGTG
AATGTTAATATACTGTAATCTCCACCAAATCTAGACTTAGCTAGAGACAT
ATCATACGAGCTGTATTCCTTATTGAAATTACAGGACATCAATTCGAACT
CCAACATCGAAGTACCAATCGAGATAGCCAAACAGTTGGGACTTCTAAAA
CCTCCTGGAGCAGGAGGATGCCCACCGTGTCCCAATCCTCCTTGTACTGG
AGGTCCTGCAGGATGTGATGTCAAAGCTAAGTCCATCTCAGAAGTGCAGA
TCAATGGTAAAGGTGATTACAGTGCACCAGTGGGGCCAGTTTTCAGTGTT
GGTGATGCTCCACCTCCGGGTATTGTGCATCCAGTAAGTTCTTTTGTTCT
TAATCATCGTGAAAAAGTTAAAAAGCCATACAATGTTGGAAAATAATATC
CGAGGAAATTAATCTACTCAGATCTTTGAAATGAAGAAAATCAAGATGTA
AAATGAAAAAAAAAATAAGAATAGGGTCAATATACTTTTTTTCATACTAC
ACTTTAGGAATTGTTAACACTGAATTTGAAAGGTAAAGATGGACGCATTG
GAAAACCAGGACCCAAGGGACCACCAGGAGATGCTGGNCAAGTCTACAAG
ATTTGGGATTCATTATCAAACCTCACAAAGATAATGTCTACAACGACATC
CATAAAAGGATGGTAAGTTATTTATCCACAACTCCTTGGTAATCATAGAT
TGAACTTTTATCGATGTCATGCTAGGATCTCCTTATCTAGAATGTAAAGA
TCTGAGATCAAACTGGCATAAAACAAGCTAATATAAATAACACTGTTATT
TTGGCATCGGATAGTGCAGACACACTGTATATATTGTGAATGTTAATATA
CTGTAATCTCCACCAAATCTAGACTTAGCTAGAGACATATCATACGAGCT
GTATTCCTTATTGAAATTACAGGACATCAATTCGAACTCCAACATCGAAG
TACCAATCGAGATAGCCAAACAGTTGGGACTTCTAAAACCTCCTGGAGCA
GGAGGATGCCCACCGTGTCCCAATCCTCCTTGTACTGGAGGTCCTGCAGG
ATGTGATGTCAAAGCTAAGTCCATCTCAGAAGTGCAGATCAATGGTAAAG
GTGATTACAGTGCACCAGTGGGGCCAGTTTTCAGTGTTGGTGATGCTCCA
CCTCCGGGTATTGTGCATCCAGTAAGTTCTTTTGTTCTTAATCATCGTGA
AAAAGTTAAAAAGCCATACAATGTTGGAAAATAATATCCGAGGAAATTAA
TCTACTCAGATCTTTGAAATGAAGAAAATCAAGATGTAAAATGAAAAAAA
AAATAAGAATAGGGTCAATATACTTTTTTTCATACTACACTTTAGGAATT
GTTAACACTGAATTTGAAAGGTAAAGATGGACGCATTGGAAAACCAGGAC
CCAAGGGACCACCAGGAGATGCTGGCCCACCAGGCTCACAAGGTCCAATG
GGTCCCAAAGGAGAACAAGGTGATGAATGTATTGCATCCAAGATGCCAAA
AGATGTGAGTTATATTTAGTGCATTCAATAAATTCCAATATTAAATTAGG
CTTGCAATTAAGGCGATGCTATTCTGTAATGAATGTCATACTTGACATTG
AAATCAATAAGAAGCTCAAAGGAAAGCACTGATATATACTAAAACATTTC
CTTGCAGAAACAATGTTCACCAGACATCGTGAGCAACCTTCGTGCAAGAT
TGGAGAAAGTGGAGAAATGTGCAACCGTAAGTATTCATCAAGATATGTCT
TCTCCTCAAATATGGTCAGTCAAGAACCTTTTATAAAATATCCCCATTTA
ATCATCAAAATTCATTGAATTAAATATAACTTTACTGCAATCGACAAGTA
TTTTAACTCATACCCATATGTAATAATCACGACATTGAAGACATCATATA
AAATTCAATTTAATCATTTTTAGAATACAACCTTGTTAGCAGCCATAACA
TTGAACGTATTGAGTACACTTGCAAATCAAAGACACGAAAAACCTAAGTC
CATTCTCGTCAAACAAAAACGCCCTCCACCTCCACCACCGCCCGCTGCAC
CAGCCCCTCCTCCGCCTCCTGCTCAACCTGCCGCTCCACCAGCACCCGCT
AGTCCACCTTCACCTCCATCGCCACCCTCGGGACAGCCAGCACCTGCTGC
ACCACCTTGTCCTGCAGGACCAGGGAAATGTGACGGAAACCAAGGCAGTA
AGTATTAAATCAAGAAATATTTGTAGAAATCAAAACATAAAATTATTTCA
CTGTGAGTCAAAAGGTAACCTTGTCTCCATAAAGTCTAGTCTTAAATAAT
AAAGCTGTTGAAATGAATGAAGGAATAAATCCTACTACGAACCTCAGTTA
TATCAACTCTCTTGAAAATGTATATCATATATTCTTTAGATGCCAATGTC
CAATCAGATGTCAAGATCGACCTGACAGGAGGCGCTGACAAACAACAACC
AGCTTGTAAACGATCTGGCACGTGCGCAACCGATCCGTCTAAAACAGCCA
ATGCATTGCAAACACTACAACAGCTTCTAAACCAAGCTAAAGCACAACAA
CAACAAAATCCTGTGGCCAAAGATTCTGCAACTGTCTTGGTGAATGGTGT
ACCGGTTAAAATACCGCTCGGGAAATAAATTGAAAGCAATGCAACTGTCA
TTCATTGGGCATCTTTCATTTGTGCTATCTGTCTATCTAAGTAGTAAATA
CATTACAATAAATTTGTTAAATAAAAATAGCGTCTAATCGATATAAAATT
TTTATTATAATTTTGATATTTCTCAATTCTTATGAATAATCAGATGGTTT
GAGATGTTTTTGTTTGTTGAACCTTTCTGTGAGCCCTGAGTAAAACCAAG
AAATGCAAGTAGCAAGAATTCCAGTGTAAAAAGCGTGTAAGTACCCAACT
TAAAAAATTGTGATTGAAAAAAGTGAGGTAAATTGTTTTCGGATGTTTTG
CTCAGCGTCATGAAAGGATTCTGCAGAAGAAAAAANACTGCTGCACCACC
TTGTCCTGCAGGACCAGGGAAATGTGACGGAAATCAAGGCAGTAAGTATT
AAATCAGGAAATATTTGTAGAAATCAAAACATAAAATTATTTCACTGTGA
GTCAAAAGGTAACCTTTTCTCCATAAAGTCTAGTCTTAAATAAGAAAGCT
ATTGAAATGAATGAAGGAATAAATCCTACTACGGACCTCAGTTATATCAA
CTCTCTTGAAAATGTATATCATATATTCTTTAGATGCCAATGTCCAATCA
GATGTCAAGATCGACCTGACAGGAGGCGCTGACAAACAACAACCAGCTTG
TAAACGATCTGGCACATGCGCAACCGATCCGTCTAAAACAGCCAATGCAT
TGCAAACACTACAACAGCTTCTAAACCAAGCTAAAGCACAACAACAACAA
AATCCTGTGGCCAAAGATTCTGCAACTGTCTTGGTGAATGGTGTACCGGT
TAAAATACCGCTCGGGAAATAAATTGAAAGCAATGCAACTGTCATTCATT
GGGCATCTTTCATTTGTGCTGTCTGTCTATCTAAGTAGTAAATACATTAC
AATAAATTTGTTAAATAAAAATAGCGTCTAATCGATATAAAATTTTTATT
ATAATTTTGATATTTCTCAATTCTTATGACTAATCAGATGGTTTGAGATG
TTTTTGTTTGTTGAACCTTTCTGTGAGCCCTGAGTAAAACCAAGAAATGC
AAGTAGCAAGAATTCCAGTGTAAAAAGCGTGTAAGTACCCAACTTAAAAA
ATTGTGATTGAAAAAAGTGAGGTAAATTGTTTTCGGATGTTTTGCTCAGC
GTCATGAAAGGATTCTGCAGAAGAAAAAAATCTCAAACAATCTTTTTTAT
GAGTTATTTGACCTATACACATCACATGTACATAAATTTCATTTTATTTA
AAAATACTAAATAGAAAATAGAAAATAATGATTTAAAAAATGCAAATCAA
AAAAGTTTTCGTAGCTTCGTTTATGTCCAAAAAGTAAACCAATGTGGTAA
AACATACAGCGGATACCTACCCTGTCCCAACAATATTTCAGCAGCTCAAT
TGTTCGTTTGTCCGTTCAACAAGCAAGGAGCTGTCATAATTCATAATAAC
ACCTTACTCTTTTGTCATGTAATCACAAAAATGAAGCAAGAAAGCAAACA
ACAACATACAGGTATGCCTGATAGTCCATACTTGAAACAGCTATCTAAGT
GAGATACATTCTTCATTCCTCATCTTTTTCATGCTCTTTCTCACAATGTT
CCTTAGATGAGATGAAGGCTAAAGGCGCCATACCAATGATACAACCTATC
ACGATGCCAATCGCACGACCCTGAGTTGTGAAAAAATCCAACAAACAATT
AAAGGTTTTATTTTTACATAAGTGTTCCCGTTTCATATCAGGCACATATT
TTATATCAGGACAGTGTGTTGCCATTGTTATATTATGCTGATATAAGCAA
AAAATGTTGTTTTTTCCTCTTTCTGATCAATCTTGCTCCACATCCGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004463XLOC_004463Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007890-exon-sc0000080-1575043694:244461..244493TCONS_00007890-exon-sc0000080-1575043694:244461..244493Clytia hemisphaericaexon
TCONS_00007890-exon-sc0000080-1575043694:244170..244271TCONS_00007890-exon-sc0000080-1575043694:244170..244271Clytia hemisphaericaexon
TCONS_00007890-exon-sc0000080-1575043694:243661..243909TCONS_00007890-exon-sc0000080-1575043694:243661..243909Clytia hemisphaericaexon
TCONS_00007890-exon-sc0000080-1575043694:243332..243486TCONS_00007890-exon-sc0000080-1575043694:243332..243486Clytia hemisphaericaexon
TCONS_00007890-exon-sc0000080-1575043694:242823..243071TCONS_00007890-exon-sc0000080-1575043694:242823..243071Clytia hemisphaericaexon
TCONS_00007890-exon-sc0000080-1575043694:242490..242648TCONS_00007890-exon-sc0000080-1575043694:242490..242648Clytia hemisphaericaexon
TCONS_00007890-exon-sc0000080-1575043694:242268..242336TCONS_00007890-exon-sc0000080-1575043694:242268..242336Clytia hemisphaericaexon
TCONS_00007890-exon-sc0000080-1575043694:241797..242070TCONS_00007890-exon-sc0000080-1575043694:241797..242070Clytia hemisphaericaexon
TCONS_00007890-exon-sc0000080-1575043694:239496..240760TCONS_00007890-exon-sc0000080-1575043694:239496..240760Clytia hemisphaericaexon
TCONS_00007890-exon-sc0000080-1510915933:244461..244493TCONS_00007890-exon-sc0000080-1510915933:244461..244493Clytia hemisphaericaexon
TCONS_00007890-exon-sc0000080-1510915933:244170..244271TCONS_00007890-exon-sc0000080-1510915933:244170..244271Clytia hemisphaericaexon
TCONS_00007890-exon-sc0000080-1510915933:243661..243909TCONS_00007890-exon-sc0000080-1510915933:243661..243909Clytia hemisphaericaexon
TCONS_00007890-exon-sc0000080-1510915933:243332..243486TCONS_00007890-exon-sc0000080-1510915933:243332..243486Clytia hemisphaericaexon
TCONS_00007890-exon-sc0000080-1510915933:242823..243071TCONS_00007890-exon-sc0000080-1510915933:242823..243071Clytia hemisphaericaexon
TCONS_00007890-exon-sc0000080-1510915933:242490..242648TCONS_00007890-exon-sc0000080-1510915933:242490..242648Clytia hemisphaericaexon
TCONS_00007890-exon-sc0000080-1510915933:242268..242336TCONS_00007890-exon-sc0000080-1510915933:242268..242336Clytia hemisphaericaexon
TCONS_00007890-exon-sc0000080-1510915933:241797..242070TCONS_00007890-exon-sc0000080-1510915933:241797..242070Clytia hemisphaericaexon
TCONS_00007890-exon-sc0000080-1510915933:239496..240760TCONS_00007890-exon-sc0000080-1510915933:239496..240760Clytia hemisphaericaexon
TCONS_00007890-exon-sc0000080-1491911889:244461..244493TCONS_00007890-exon-sc0000080-1491911889:244461..244493Clytia hemisphaericaexon
TCONS_00007890-exon-sc0000080-1491911889:244170..244271TCONS_00007890-exon-sc0000080-1491911889:244170..244271Clytia hemisphaericaexon
TCONS_00007890-exon-sc0000080-1491911889:243661..243909TCONS_00007890-exon-sc0000080-1491911889:243661..243909Clytia hemisphaericaexon
TCONS_00007890-exon-sc0000080-1491911889:243332..243486TCONS_00007890-exon-sc0000080-1491911889:243332..243486Clytia hemisphaericaexon
TCONS_00007890-exon-sc0000080-1491911889:242823..243071TCONS_00007890-exon-sc0000080-1491911889:242823..243071Clytia hemisphaericaexon
TCONS_00007890-exon-sc0000080-1491911889:242490..242648TCONS_00007890-exon-sc0000080-1491911889:242490..242648Clytia hemisphaericaexon
TCONS_00007890-exon-sc0000080-1491911889:242268..242336TCONS_00007890-exon-sc0000080-1491911889:242268..242336Clytia hemisphaericaexon
TCONS_00007890-exon-sc0000080-1491911889:241797..242070TCONS_00007890-exon-sc0000080-1491911889:241797..242070Clytia hemisphaericaexon
TCONS_00007890-exon-sc0000080-1491911889:239496..240760TCONS_00007890-exon-sc0000080-1491911889:239496..240760Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000080supercontigsc0000080:239496..244493 -
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007890 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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