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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007878 ID=TCONS_00007878|Name=TCONS_00007878|organism=Clytia hemisphaerica|type=transcript|length=3008bpRun BLAST on NCBI protein sequence of TCONS_00007878-protein >TCONS_00007878-protein ID=TCONS_00007878-protein|Name=TCONS_00007878-protein|organism=Clytia hemisphaerica|type=polypeptide|length=440bp MQYLLTYFLFFPRGDNDLNDNFTKEKYAIEMLKKQPPRPAVKGARAKFKKRun BLAST on NCBI transcript from alignment at sc0000080:172808..186346- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00007878 ID=TCONS_00007878|Name=TCONS_00007878|organism=Clytia hemisphaerica|type=transcript|length=13539bp|location=Sequence derived from alignment at sc0000080:172808..186346- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000080:172808..186346- >TCONS_00007878 ID=TCONS_00007878|Name=TCONS_00007878|organism=Clytia hemisphaerica|type=CDS|length=10584bp|location=Sequence derived from alignment at sc0000080:172808..186346- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00007878 vs. Swiss-Prot (Human)
Match: MYPT1 (Protein phosphatase 1 regulatory subunit 12A OS=Homo sapiens GN=PPP1R12A PE=1 SV=1) HSP 1 Score: 264.233 bits (674), Expect = 1.226e-73 Identity = 138/286 (48.25%), Postives = 194/286 (67.83%), Query Frame = 3
Query: 450 RIVKALEDRSKSIKRWMQSDTAKQQPERTDEQFTIKFDKGTVFLSAVASSDIDEVKKLLDRGVDIDTTNNDGLTALHQACIDENDEMVELLIDRGANIEAVDNEGWTPLHAAASAGNIDIARILVESGANLAAVNNEGEVPLDLADEDDMDEFLSDEIDAQELEVEDARNEEERLMIEHATSWLNKKKIDDNLDWQEAG-ALHVAAAKGYNKVISTILQVSNADVNMRDADGWTPLHAAIHWGNQTATELLTEAGADFDLKNSNSQTPCDLAEADFLKAAENCRKR 1304
++ A + R++ +KRW+ S+T + P ++ +KFD G VFL+A +S D DEV KLL RG DI+ N DGLTALHQACID+N +MV+ L++ GANI DNEGW PLHAAAS G +DIA L+ GA++ AVN+EG+ PLD+A+E+ M+E L +E++ Q +++E AR EEER+M+ A WLN I+D + G ALHVAAAKGY +V+ ++Q + DVN++D DGWTPLHAA HWG + A +L + D ++ N QT D+A+ D L E +K+
Sbjct: 2 KMADAKQKRNEQLKRWIGSETDLEPPVVKRQKTKVKFDDGAVFLAACSSGDTDEVLKLLHRGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEFLIGQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQ-AGYDVNIKDYDGWTPLHAAAHWGKEEACRILVDNLCDMEMVNKVGQTAFDVADEDILGYLEELQKK 286 The following BLAST results are available for this feature:
BLAST of TCONS_00007878 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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