TCONS_00007874 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007874
Unique NameTCONS_00007874
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1796

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007874 ID=TCONS_00007874|Name=TCONS_00007874|organism=Clytia hemisphaerica|type=transcript|length=1796bp
ttgttcttttgtttttgatggaGGAGAGAATAATGATTGCAAGCAGGCTG
TTTTTGTGTTGTTGATGATGATGGAATGATAAACCGGTTTGTGTGTGTAT
ACACAGAGAAAGAAATATGGCTGATGTCTTCTTACTTAGGAAATAAATAA
TTCCCTAGCCTTTTTTGTTGTTCTCTTGTTTTATATATGGAAAATTTTTA
CTTGCTTTGATTATTTTGCTGGGATTCTATTATTTATCAATGGTTTTTAC
ATGTACATAAAATTCACCTACTACAACTACcaaaaaaaatgttacaaaat
agATATAGACGACGCTATAGGGACGAAGATAACCAAGAAACAGAGACACA
GCCTTCGACGAGGCGAACGACACGAACTTACGATACTGGGGGTAGCACCA
CTGATACAACCTCCACACGAAGAACCAATCGTACATCCACTGATGACGAT
TCAAGCTCTCGCATGAGTATCGCCGAAAGGCTACATAAAAAGAATCAAGA
ACTGCTTGCAACAACTTCAGATAATAACAATTCATCGGGCAGATCATGGC
AACGCTCTTCAAACCCTTCGACGACCTCTTCAACTTCATCTTCGGACACG
GGGGATACAAAAGATCTACAACGAAAACTCGACCAAGCTGTCAAAGAAGT
AGAAGAATACAAATCCAagtatgaaaaaatgaaaaaggaaaaagaagaat
tagAAAAACAACTTAGTCAATATAAAGAAGATATCGATaaAGTGCAAGAT
CTAAAGAGCGACAATATACGTCTGAAAGATGAGAATGGGGCGCTTATCAG
AGTTATTAGTAAATTATCACGTACCCCTGCTTCATCTTCTTCGTGAGTCG
TGGATCGTCCGCTGCTTCCTTGtgaattattatattattattattgctGA
GGTGCTGCTGGTGCTACCGAGGAGAGATGAGCCGctgattaaattttttt
aaataagaaagaGAGAACTTTTTATACTACCTTTCATAGAACAGTTGTTT
taataaatgaagaagaagaaggatataaacaacaaaatacaaCGTCCCAA
CAAATTCCAGTGAATATTCACGCTCACCCTCGTTCGATGAATTGTGTCCG
GGCTCACGATATTGGACATGATCGCAGTGCGTGTTTCCATAACAGTAATG
AGATATCTGTGAAACACGAATATACCGACTGACATGCTCTGTCGCTCAAT
GGTCAACGCAGTTAATGTtttctgaaatctttttttatgaataaacTTAT
TGAAGAAGTGCAGGTATTTTGGTGGTGAAAAAGTGATATTAAGAAACAGC
TTTTTGAAAAGGATTGGATTCCTTAGAGATTGATTCtctttgattatttt
atttacaaaaagaaaagacaaaTTCTCCTTCTTTTTCGTACCTATGAATT
CGATTGACTTCTGCACTGAAGcgttttgttgtctttttatgCTAGTGAGA
AATGAGACGACTCATCAGACGAATTgatcattatcatcatcatcaacatt
ttcacactttttcatcaaatttgagaTTAGAATTCCACAGTAACGTTGTT
TGTATTATCAAAAGATAttaataattatatttttctattagTCCAACATG
AtttgctaaaaaaaatttttgagtcCGTTTGTAGGTTGAaacgaaaagaa
gaaaaaaagattaatttGACAACGTTAAAAAATTATTcgtttgaaacatt
cttcttcCTTTCTTTCAAACGCGTCCCATGTCAAGTTTATAAGCATAAGA
CTTGTGAAAGCAAATTCAGGTTTAGATTTAAGTCCTGACCTCGTGA
Run BLAST on NCBI

transcript from alignment at sc0000080:170998..175540-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007874 ID=TCONS_00007874|Name=TCONS_00007874|organism=Clytia hemisphaerica|type=transcript|length=4543bp|location=Sequence derived from alignment at sc0000080:170998..175540- (Clytia hemisphaerica)
TTGTTCTTTTGTTTTTGATGGAGGAGAGAATAATGATTGCAAGCAGGCTG
TTTTTGTGTTGTTGATGATGATGGAATGATAAACCGGTTTGTGTGTGTAT
ACACAGAGAAAGAAATATGGCTGATGTCTTCTTACTTAGGAAATAAATAA
TTCCCTAGCCTTTTTTGTTGTTCTCTTGTTTTATATATGGAAAATTTTTA
CTTGCTTTGATTATTTTGCTGGGATTCTATTATTTATCAATGGTTTTTAC
ATGTACATAAAATTCACCTACTACAACTACCAAAAAAAATGTTACAAAAT
AGATATAGACGACGCTATAGGGTATGTTGTTGATCTTTACAGGGGTTGGT
TGGTAATTGAGCTTTATTATTTTCTTGTGGTTGCAATCGTAGTGTCTTTT
ATTATCAAGGCTGGATGATTGAAAATCTCTTTAGTTTGTTTTAATACTTT
GATGTAGAGTTTCGAACATTAAGTTTGTAAGCTGAATGTTAAAATTGTTC
GAATTTTACCTTATAATCAATTTTGGTTTTAGCTTCGAGAAAGTTTTCAT
AACTAGTAAAGTTTCAAGGATCTTTGGTTGTGCAGTATGGAATGCAATGG
ATTGATTTTAGTCACAAATTGTTTAATATTACATCGTTTTTCATGATTTT
TTGTTTGTTTCCTCAGGACGAAGATAACCAAGAAACAGAGACACAGCCTT
CGACGAGGCGAACGACACGAACTTACGATACTGGGGGTAGCACCACTGAT
ACAACCTCCACACGAAGAACCAATCGTACATCCACTGATGACGATTCAAG
CTCTCGCATGGTAAGCAGTAACGTTTTTGTTGGGAAGATAATTGAGAGAA
AGTAAAGTTAAGCTATTTTTTCAGGTTCCTCGTTTTATTGAGTTCGAGTC
TTTGAACAATCTTTTAGAGAGAGATGAAATAATTTTCATGAAAGTGTTCA
ACGAAAGCATGCACTTGATCAAACCATTTCTCTTCCTCACGTTTAAAAGC
AGGGAGTATCTCTTTCTCCCTTTTCTTCAAAGGAATGTCAGGGATAAAGT
TTCTGTTTTATTTGCTTTGACGTTTGTTGAAAATATCTCAAATTTCTTGC
TGCCATTTTGATTCCTGTTGTTTCTTCAACCGACTGTTTTCTCCTTGCTT
CTTTACAGAGTATCGCCGAAAGGCTACATAAAAAGAATCAAGAACTGCTT
GCAACAACTTCAGATAATAACAATTCATCGGGCAGATCATGGCAACGCTC
TTCAAACCCTTCGACGACCTCTTCAACTGTAAGCATTTCCTAAATTCTTT
TAGTACCAAAGGGAATGTAGTTGTTATTTCTTAGCAATAACTTTTTTCAC
AAATGATCCCCCTTTCTCTTTGATAAGAGGCAAACCTATTTTCTCTCTGA
TTATTAAAAGGAGGACATACAGAGCGCAAGCATCATACAATATTATCATT
ATTCAGTAATCCCTGCTGTGCAGTGGCAAAACTAATAGCTCCAGTTCAAT
TCCATAGGAGACTGAAGCTTTTACAATGTATGAGGTTTTTCAGATAGGAT
GATTGTGTCTTGTTTTATACTTTCCAAATCTTTGGTCTAGTAGGAGTTTG
AAACTTAATATTTCTTAATTATCACTGATGATAGGCCTGACGGACATAAT
GACCAGTTCTTCTCTTCACTTTCAGTCATCTTCGGACACGGGGGATACAA
AAGATCTACAACGAAAACTCGACCAAGCTGTCAAAGAAGTAGAAGAATAC
AAATCCAAGTATGAAAAAATGAAAAAGGTAAGCATATTTTCTTTCATGTG
AAATTCCATTACACCATGTTTTTTTTAAATCAATCATTGATCAGTACATG
TTTCTTTTTACAAGAACATCCAAAATTTTTGAAGCCTTCGGATGTTCTTA
TTCTCACCATTTGTGCTACAATTTCCTAAGAAATGGGGTGTTTTAGAGCC
CACTAAGCCATCGAAGCCTTATGATCTTATATTATTTGTTCTTATAAAAA
CGTGTGGTTTGGCTATTTCATTGGCACTTCAATTTCTCATGAGTCAATTT
TTTTGGACTTTTAAATTATTTGTTTTTATTTGTTTTCAGGAAAAAGAAGA
ATTAGAAAAACAACTTAGTCAATATAAAGAAGATATCGATGTAAGTATTG
ATTGATTGATTGATTGATTGATTGATTGATTGATTGATTGATTGATTGAT
CATTGATTGATCATTGATTGATTGATTGATTTTGTAAGTTTTTGAGCAAT
CCAGAAATGTATGGGCCTAGAGTATTAGGGTTTACACTTGCCTTTTTTTC
AAACGTTATCTTGATGATTGCCTTCCCGAATCAATATAATTGGCAGCAAC
ACTGCAATATGCAATATTTCTTAACATGCATTGCTCTGTCTAAATCAATT
TTTTGTTTTTATATTTTGTAGAAAGTGCAAGATCTAAAGAGCGACAATAT
ACGTCTGAAAGATGAGAATGGGGCGCTTATCAGAGTTATTAGTAAATTAT
CACGTACCCCTGCTTCATCTTCTTCGTGAGTCGTGGATCGTCCGCTGCTT
CCTTGTGAATTATTATATTATTATTATTGCTGAGGTGCTGCTGGTGCTAC
CGAGGAGAGATGAGCCGCTGATTAAATTTTTTTAAATAAGAAAGAGAGAA
CTTTTTATACTACCTTTCATAGAACAGTTGTTTTAATAAATGAAGAAGAA
GAAGGATATAAACAACAAAATACAACGTCCCANNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNATTGATTGATTGATTGATTTTGTA
AGTTTTTGAGCAATCCAGAAATGTATGGGCCTAGAGTATTAGGGTTTACA
CTTGCCTTTTTTTCAAACGTTATCTTGATGATTGCCTTCCCGAATCAATA
TAATTGGCAGCAACACTGCAATATGCAATATTTCTTAACATGCATTGCTC
TGTCTAAATCAATTTTTTGTTTTTATATTTTGTAGAAAGTGCAAGATCTA
AAGAGCGACAATATACGTCTGAAAGATGAGAATGGGGCGCTTATCAGAGT
TATTAGTAAATTATCACGTACCCCTGCTTCATCTTCTTCGTGAGTCGTGG
ATCGTCCGCTGCTTCCTTGTGAATTATTATATTATTATTATTGCTGAGGT
GCTGCTGGTGCTACCGAGGAGAGATGAGCCGCTGATTAAATTTTTTTAAA
TAAGAAAGAGAGAACTTTTTATACTACCTTTCATAGAACAGTTGTTTTAA
TAAATGAAGAAGAAGAAGGATATAAACAACAAAATACAACGTCCCAACAA
ATTCCAGTGAATATTCACGCTCACCCTCGTTCGATGAATTGTGTCCGGGC
TCACGATATTGGACATGATCGCAGTGCGTGTTTCCATAACAGTAATGAGA
TATCTGTGAAACACGAATATACCGACTGACATGCTCTGTCGCTCAATGGT
CAACGCAGTTAATGTTTTCTGAAATCTTTTTTTATGAATAAACTTATTGA
AGAAGTGCAGGTATTTTGGTGGTGAAAAAGTGATATTAAGAAACAGCTTT
TTGAAAAGGATTGGATTCCTTAGAGATTGATTCTCTTTGATTATTTTATT
TACAAAAAGAAAAGACAAATTCTCCTTCTTTTTCGTACCTATGAATTCGA
TTGACTTCTGCACTGAAGCGTTTTGTTGTCTTTTTATGCTAGTGAGAAAT
GAGACGACTCATCAGACGAATTGATCATTATCATCATCATCAACATTTTC
ACACTTTTTCATCAAATTTGAGATTAGAATTCCACAGTAACGTTGTTTGT
ATTATCAAAAGATATTAATAATTATATTTTTCTATTAGTCCAACATGATT
TGCTAAAAAAAATTTTTGAGTCCGTTTGTAGGTTGAAACGAAAAGAAGAA
AAAAAGATTAATTTGACAACGTTAAAAAATTATTCGTTTGAAACATTCTT
CTTCCTTTCTTTCAAACGCGTCCCATGTCAAGTTTATAAGCATAAGACTT
GTGAAAGCAAATTCAGGTTTAGATTTAAGTCCTGACCTCGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004461XLOC_004461Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007874-exon-sc0000080-1575043694:175220..175540TCONS_00007874-exon-sc0000080-1575043694:175220..175540Clytia hemisphaericaexon
TCONS_00007874-exon-sc0000080-1575043694:174731..174874TCONS_00007874-exon-sc0000080-1575043694:174731..174874Clytia hemisphaericaexon
TCONS_00007874-exon-sc0000080-1575043694:174263..174382TCONS_00007874-exon-sc0000080-1575043694:174263..174382Clytia hemisphaericaexon
TCONS_00007874-exon-sc0000080-1575043694:173764..173865TCONS_00007874-exon-sc0000080-1575043694:173764..173865Clytia hemisphaericaexon
TCONS_00007874-exon-sc0000080-1575043694:173401..173451TCONS_00007874-exon-sc0000080-1575043694:173401..173451Clytia hemisphaericaexon
TCONS_00007874-exon-sc0000080-1575043694:170998..172055TCONS_00007874-exon-sc0000080-1575043694:170998..172055Clytia hemisphaericaexon
TCONS_00007874-exon-sc0000080-1510915933:175220..175540TCONS_00007874-exon-sc0000080-1510915933:175220..175540Clytia hemisphaericaexon
TCONS_00007874-exon-sc0000080-1510915933:174731..174874TCONS_00007874-exon-sc0000080-1510915933:174731..174874Clytia hemisphaericaexon
TCONS_00007874-exon-sc0000080-1510915933:174263..174382TCONS_00007874-exon-sc0000080-1510915933:174263..174382Clytia hemisphaericaexon
TCONS_00007874-exon-sc0000080-1510915933:173764..173865TCONS_00007874-exon-sc0000080-1510915933:173764..173865Clytia hemisphaericaexon
TCONS_00007874-exon-sc0000080-1510915933:173401..173451TCONS_00007874-exon-sc0000080-1510915933:173401..173451Clytia hemisphaericaexon
TCONS_00007874-exon-sc0000080-1510915933:170998..172055TCONS_00007874-exon-sc0000080-1510915933:170998..172055Clytia hemisphaericaexon
TCONS_00007874-exon-sc0000080-1491911889:175220..175540TCONS_00007874-exon-sc0000080-1491911889:175220..175540Clytia hemisphaericaexon
TCONS_00007874-exon-sc0000080-1491911889:174731..174874TCONS_00007874-exon-sc0000080-1491911889:174731..174874Clytia hemisphaericaexon
TCONS_00007874-exon-sc0000080-1491911889:174263..174382TCONS_00007874-exon-sc0000080-1491911889:174263..174382Clytia hemisphaericaexon
TCONS_00007874-exon-sc0000080-1491911889:173764..173865TCONS_00007874-exon-sc0000080-1491911889:173764..173865Clytia hemisphaericaexon
TCONS_00007874-exon-sc0000080-1491911889:173401..173451TCONS_00007874-exon-sc0000080-1491911889:173401..173451Clytia hemisphaericaexon
TCONS_00007874-exon-sc0000080-1491911889:170998..172055TCONS_00007874-exon-sc0000080-1491911889:170998..172055Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000080supercontigsc0000080:170998..175540 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.241571	0.434899	1.74407e-06	4.31697e-05	133.803	72.3602	131.226	133.167	66.0662	70.8226	29.1848	54.5685	72.2651	81.6493	58.8663	45.4599	51.9261	51.4743	111.277	99.6973	81.6716	78.6869	32.1616	38.6892	1.72743	22.9538	85.0835	85.1274	50.5024	55.6426
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007874 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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