|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007872 ID=TCONS_00007872|Name=TCONS_00007872|organism=Clytia hemisphaerica|type=transcript|length=2307bpRun BLAST on NCBI protein sequence of TCONS_00007872-protein >TCONS_00007872-protein ID=TCONS_00007872-protein|Name=TCONS_00007872-protein|organism=Clytia hemisphaerica|type=polypeptide|length=752bp MYNWPSNVLLLLALQVGTAQLQTEIVPLVTSSSCLVYIKSVDYPRQFWYARun BLAST on NCBI transcript from alignment at sc0000080:128004..138407- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00007872 ID=TCONS_00007872|Name=TCONS_00007872|organism=Clytia hemisphaerica|type=transcript|length=10404bp|location=Sequence derived from alignment at sc0000080:128004..138407- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000080:128004..138407- >TCONS_00007872 ID=TCONS_00007872|Name=TCONS_00007872|organism=Clytia hemisphaerica|type=CDS|length=42864bp|location=Sequence derived from alignment at sc0000080:128004..138407- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00007872 vs. Swiss-Prot (Human)
Match: AGRL3 (Adhesion G protein-coupled receptor L3 OS=Homo sapiens GN=ADGRL3 PE=1 SV=2) HSP 1 Score: 236.113 bits (601), Expect = 1.151e-64 Identity = 146/453 (32.23%), Postives = 240/453 (52.98%), Query Frame = 2
Query: 965 VESIGMAIAKKLNTNDSVSITTGNLEL----LAKQQRLP-FKFPENDNATSFIEVQS----LSGDDEKVPVVGVLHRDIHENLQTNVQLQIDLDEESKGDEEEYTVNSQLISASVGNG-----TLISNVLVTLDHLKKIKDFNSTICAFWLESSDT-EGRWDTQGCVKIKSTQDATQCSCSHLTNFA-LLTNIREFEIPVIHRTILSMMSLVCCWISIVFLLIGILLFSMLFMGGKRHTRHIIHTNLMVALCASQLIFVFGIEATENKIVCQTVAYLLHFFLMASFTWMLVEGLYLYYAIIKVFSDGKIYLSWYIIFAWGAPAVVVGITGGLRHHWYGTPEYCWLSTEGHAIWGFLGPVAAIIIVNTWILVLIIRQI----VALAKSTGIADDVKTGFRSSLILLPILGVTWIFGFLSFNTHTIAFQYIFAISNSLQGFLVTLFHVFLNSEVR 2263
VE +A L D V T N++L L+ + L KFPEN S I++ + +G + ++ V VL+ ++ L T + L E+ VNS +I+A++ L V+ T+ H+K+ ++ + C+FW S T G W TQGC + + + T CSC+HLTNFA L+ ++ +H +L +++ V +S+V LLI I F+ F G + R+ IH NL ++L ++L+F+ GI T+ I C A LLHFF +A+FTWM +EG+ LY +++VF ++ + +G PA++V ++ + + YGT + CWL + + IW F+GP II++N L + + ++ L +G D++K+ ++ LL +LG+TW FG + N T+ Y+F I NSLQG + +FH L +VR
Sbjct: 660 VEESAFVLADNLLKTDIVRENTDNIKLEVARLSTEGNLEDLKFPENMGHGSTIQLSANTLKQNGRNGEIRVAFVLYNNLGPYLSTE-NASMKLGTEALSTNHSVIVNSPVITAAINKEFSNKVYLADPVVFTVKHIKQSEENFNPNCSFWSYSKRTMTGYWSTQGCRLLTTNKTHTTCSCNHLTNFAVLMAHVEVKHSDAVHDLLLDVITWVGILLSLVCLLICI--FTFCFFRGLQSDRNTIHKNLCISLFVAELLFLIGINRTDQPIACAVFAALLHFFFLAAFTWMFLEGVQLYIMLVEVFESEHSRRKYFYLVGYGMPALIVAVSAAVDYRSYGTDKVCWLRLDTYFIWSFIGPATLIIMLNVIFLGIALYKMFHHTAILKPESGCLDNIKSWVIGAIALLCLLGLTWAFGLMYINESTVIMAYLFTIFNSLQGMFIFIFHCVLQKKVR 1109 The following BLAST results are available for this feature:
BLAST of TCONS_00007872 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.