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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007865 ID=TCONS_00007865|Name=TCONS_00007865|organism=Clytia hemisphaerica|type=transcript|length=3336bp
GTCAAATGGAAAGAATCTCAAATGAGCTGTGTCCATCGTAAGGGAATCTA
TATGGTGGAGGGGCTACATATTCAGGTGGTGACTCGCTTGGAGCTTTGTA
GAAACTGTCAAGCGAATCATCATCCGAGCTTATACTCGATGCTTTTGCAC
CTCGCGCTCCGTAATCCGGGATATCAAGACTAGTGTTATCATACGGTCCG
TCATAAGCACCCAAACGCAAGTCCTCTTCAGGTGGATGTCTCTTCTTAGG
AGGAGCTTGTAGTTCAAGTTCGTCTGGAAATAAAACAGGCTGGCCTTTCT
CATAGCGCCGACTACCGACGTAAAAGGTCCGCTTGTTCCGTTGACGTCGA
AAGACAATACAAACAATGATAATGACAATAATGAGGATGATAATTAAAAC
GATTATTGGTATCAAGTATTCCAAGTATTTATTGTCGTCAACACCCGTTC
CAATTGGGGCGGGAGTGGGCGAAGTGATACAAACGCCTGAATATTTCAAA
TCCATATCAACGATAGGGAACTCGGGTGCTAAAGAATCTTTGAAACTTTT
CTGTGCACTGTTCGTGTTGGGCTGCTTGACGACTTCCACATTTTGGTCAA
TCAACGTTCTGTCACATGTATTCCTTGTTGCTATGGACGCATTATTGAAT
TCCAAAATGGTAGACCCATTTGTTACAGAGTGAAAGTACAGAGAACTATC
AGTAACACCCTCACCGTAAAACTGCAAGACTTGATTCATCAAATCGAACC
TCATTGAGTGTGAATTAACAAACGTTTCGAAATCCAGTAAGAGTTTCATT
GAGATGAGATATGAAACAGACTTCAGAGGAGCCGTTATAGCCACACGAAA
CTGTGTTGTTGTATGTAGCCCATTACTATCGTATGCGCGGACGTGTATCA
ATTGAGATTGGTCTTGATTATCATAGTCATAGGATAAAGGAAATGCTGAT
AAAGTCTGGGTGGTCGAGTTGAATTCAAGCCAAATAATGTTGAATGAATT
CTCGGTCTCGGTAAAACAGCTCAAGGTTAGATTTCTCGTACCCCCGTCTT
GTGagtcaaagaaaatgttttcggGAATTTCAAACAATGTCATTTTGCCG
GAATCGAAGAAAAGGGTGTCAATAATATTTGTAACAATAGGTggagagtt
tggtacaggcgtCGTTGTTGTAAATATGTTTGAAGAAGAGATCTGATTGG
CCGAGGAGCTTGTTGGTTTGATCACGCGCTCTGTGGACGAAATTTGATTG
GCCAAAGGGGTCGAGGTTTCTATCACGCGGTTAGAGGATGAAACCAGATT
GGCTAACGAATTCGAAGGACTGATGATTTCGTCTGTTGATGAGTGTTCAA
TTAATGAGGTTGAAGGCTCGATCACATGATCAGACGAAGATATCTGATTG
GTAGATCGTTCTATgatattgcttgaaaatgcaatCTGATCGGCTAATGA
AGAAGATGGTTGGAGCAAGTGACTTAATGACGTTTCAGATTCGATTGCAT
TGGAAGTTATCAGTGATGAGAAAAAGTTTTCTGTTGATAAAAGATCTGGC
AGATGACTTGTCGAAGGAGTGATTTGGTGAACGTTCGATGAAGCATTACT
CAAATAATTGACAATGGAAGTCCTACTTTCTTTACCGGTGCTTGATTGAA
TATAAGTTGAACTAATTGCTGTTGAATACACTGATGTCAATAGTAATAGT
GTTTCTAGATTGTCTGATGTCTGGAAAATGTTTGTTGTTTCTGGAGCTGA
ATTTGAAGTGAGGTTTTCTGATATAATAAATGATGAAAGCTGGAGTAACG
TTGTGTTGGATGAGAAAATGAATGATGTTTCGATTGTGGAGAATAAAGTG
TCTGTTAATATCATCAATGAATGTGTGTGGCTTGTGGAGAAAGTTTCGgt
aaaaatggttgaaaagtCTGTTGCCGAGTAGCTGATGTTGCTATGAATAC
TTGATAATGAATTGATTGTTGATGAAAATGGACTGGTGATTGAGTTATCA
TTGATACTTTCAAGACttgaagaaaacgaagaagtTGAATCAAATTCTGA
TGAAACAATCCCAGTAGATATACTTGACGATACTACTGCAGAGGATACAA
GGGTTGTTGGAGGTTCGGATTTGTAAGTGCTTGTATTGATTTGGATGTTT
GATATTGGCTTTGAAAATTGTGAAGAAAAACTGAAGTTCAACGTTGACAT
CGTATTTATCGGAGAAGAAAGGAAGTCAGAATGCATGCTTGGCGATATTG
ATGACGATGTATCAAGTGTGAAGTCTGTGGAAATCGTTTGTGTTGTAGAA
AAGCGAAAAGATGAATCAGATATAATGTCAGTTGATGGATTTTTGGATAA
CACACTTGTTGGCATTGATGTGAATGAAGGCTCTATGCTTGTGGTAAAGT
CTGTGATGATTGTTGGGTCTGGTTCTTTCCCACTGTTAACCACAACAGTG
TCTAGCAACAACGAGCTAATACTGATCTCAGAGGGCGAAAGATGTTCAGA
AGTAAGAGCCATTATTGATGAATCCATAGAGAGTGTTTGTGATGGAATAC
TATCAGAATTTAAGAAGCTCGATGTCATATAAAGAGATGTCTGTACGCTT
GATTCAGAAGGTGGCGGAAGGGTGGATGATTCAATGGGTGTTCCAACAAG
GGCGGAGATAgaaccaaagaaaatttctcGTTTCACGCGAATATGTCCTC
GCACTAAATGCCATTGAAAGTTGCTACCTATATCTCGACGTTTCCGATGA
TTTTGTTGAGAGTGCTTcagttttttcaatatttctgtATGATTATAAAC
ATTTGTTGGTATAACCCATGAGAAGAGTGTCTTGTTGTTTAGTGAAATTT
CTGACACATCCGAAGAAACAACTTCTAATGAATGTAATTGTTTATAAAAG
ACATGAGGATGATCTTCTGGTAGCACTTGTAATGAATGAAGTGGTAATCC
AATGTTTCTGGATAAGCCTTCACCGATATCTAACAAATCATCTCGTTTGT
CTGTTGGTAATATTACAGTCAGAATGTGAAACCTGGCATCTTCATCTTTC
TTGGTCAGATTCGAAGCACTGGTGTAGGATTGAATGCTTTTTGAAGATAC
TTTCAGTATTCTCAATTCATATTGTATGGAATGACAGAGTTTAATATAGT
TGCCAAAAGGAGCACCAAAAATGAGAATGATAAAAAGATATCTGTCCTCG
GTGGGTGGCAGTCCATGTATAATGTCATCATTTATTTGCAACCAAGTTGA
TGCATCCCCAATCTGGTCGATTATCTGAAGTAAGTGAAATAAAGACAGAA
AATTGTGAgacttttaaaaagaattttcaaaatttc Run BLAST on NCBI transcript from alignment at sc0000080:650743..654438+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007865 ID=TCONS_00007865|Name=TCONS_00007865|organism=Clytia hemisphaerica|type=transcript|length=3696bp|location=Sequence derived from alignment at sc0000080:650743..654438+ (Clytia hemisphaerica)
GTCAAATGGAAAGAATCTCAAATGGTTAGGCTCGATATTGAATTCTATTC
GAGGATTTTCAGGGCGTGGCTgaataaagaaaatacttttcAATTTGCAG
AAGAATCGTTAATGACTAAAGATGAAGTAAACAGAAACAGATCATTTTCG
TTTCGTTTTAATTGACGAcacaaataataaaaaaaactgacagagaaaag
aaaattgagCAAAGTTTAATCTAATGGCTGTCGCGAAATCGATAattgaa
attgattttaataaatTGAAGCGAAAATTGACAGTCTAACtaagtatttt
caaaatgtttatatTTCAGAGCTGTGTCCATCGTAAGGGAATCTATATGG
TGGAGGGGCTACATATTCAGGTGGTGACTCGCTTGGAGCTTTGTAGAAAC
TGTCAAGCGAATCATCATCCGAGCTTATACTCGATGCTTTTGCACCTCGC
GCTCCGTAATCCGGGATATCAAGACTAGTGTTATCATACGGTCCGTCATA
AGCACCCAAACGCAAGTCCTCTTCAGGTGGATGTCTCTTCTTAGGAGGAG
CTTGTAGTTCAAGTTCGTCTGGAAATAAAACAGGCTGGCCTTTCTCATAG
CGCCGACTACCGACGTAAAAGGTCCGCTTGTTCCGTTGACGTCGAAAGAC
AATACAAACAATGATAATGACAATAATGAGGATGATAATTAAAACGATTA
TTGGTATCAAGTATTCCAAGTATTTATTGTCGTCAACACCCGTTCCAATT
GGGGCGGGAGTGGGCGAAGTGATACAAACGCCTGAATATTTCAAATCCAT
ATCAACGATAGGGAACTCGGGTGCTAAAGAATCTTTGAAACTTTTCTGTG
CACTGTTCGTGTTGGGCTGCTTGACGACTTCCACATTTTGGTCAATCAAC
GTTCTGTCACATGTATTCCTTGTTGCTATGGACGCATTATTGAATTCCAA
AATGGTAGACCCATTTGTTACAGAGTGAAAGTACAGAGAACTATCAGTAA
CACCCTCACCGTAAAACTGCAAGACTTGATTCATCAAATCGAACCTCATT
GAGTGTGAATTAACAAACGTTTCGAAATCCAGTAAGAGTTTCATTGAGAT
GAGATATGAAACAGACTTCAGAGGAGCCGTTATAGCCACACGAAACTGTG
TTGTTGTATGTAGCCCATTACTATCGTATGCGCGGACGTGTATCAATTGA
GATTGGTCTTGATTATCATAGTCATAGGATAAAGGAAATGCTGATAAAGT
CTGGGTGGTCGAGTTGAATTCAAGCCAAATAATGTTGAATGAATTCTCGG
TCTCGGTAAAACAGCTCAAGGTTAGATTTCTCGTACCCCCGTCTTGTGag
tcaaagaaaatgttttcggGAATTTCAAACAATGTCATTTTGCCGGAATC
GAAGAAAAGGGTGTCAATAATATTTGTAACAATAGGTggagagtttggta
caggcgtCGTTGTTGTAAATATGTTTGAAGAAGAGATCTGATTGGCCGAG
GAGCTTGTTGGTTTGATCACGCGCTCTGTGGACGAAATTTGATTGGCCAA
AGGGGTCGAGGTTTCTATCACGCGGTTAGAGGATGAAACCAGATTGGCTA
ACGAATTCGAAGGACTGATGATTTCGTCTGTTGATGAGTGTTCAATTAAT
GAGGTTGAAGGCTCGATCACATGATCAGACGAAGATATCTGATTGGTAGA
TCGTTCTATgatattgcttgaaaatgcaatCTGATCGGCTAATGAAGAAG
ATGGTTGGAGCAAGTGACTTAATGACGTTTCAGATTCGATTGCATTGGAA
GTTATCAGTGATGAGAAAAAGTTTTCTGTTGATAAAAGATCTGGCAGATG
ACTTGTCGAAGGAGTGATTTGGTGAACGTTCGATGAAGCATTACTCAAAT
AATTGACAATGGAAGTCCTACTTTCTTTACCGGTGCTTGATTGAATATAA
GTTGAACTAATTGCTGTTGAATACACTGATGTCAATAGTAATAGTGTTTC
TAGATTGTCTGATGTCTGGAAAATGTTTGTTGTTTCTGGAGCTGAATTTG
AAGTGAGGTTTTCTGATATAATAAATGATGAAAGCTGGAGTAACGTTGTG
TTGGATGAGAAAATGAATGATGTTTCGATTGTGGAGAATAAAGTGTCTGT
TAATATCATCAATGAATGTGTGTGGCTTGTGGAGAAAGTTTCGgtaaaaa
tggttgaaaagtCTGTTGCCGAGTAGCTGATGTTGCTATGAATACTTGAT
AATGAATTGATTGTTGATGAAAATGGACTGGTGATTGAGTTATCATTGAT
ACTTTCAAGACttgaagaaaacgaagaagtTGAATCAAATTCTGATGAAA
CAATCCCAGTAGATATACTTGACGATACTACTGCAGAGGATACAAGGGTT
GTTGGAGGTTCGGATTTGTAAGTGCTTGTATTGATTTGGATGTTTGATAT
TGGCTTTGAAAATTGTGAAGAAAAACTGAAGTTCAACGTTGACATCGTAT
TTATCGGAGAAGAAAGGAAGTCAGAATGCATGCTTGGCGATATTGATGAC
GATGTATCAAGTGTGAAGTCTGTGGAAATCGTTTGTGTTGTAGAAAAGCG
AAAAGATGAATCAGATATAATGTCAGTTGATGGATTTTTGGATAACACAC
TTGTTGGCATTGATGTGAATGAAGGCTCTATGCTTGTGGTAAAGTCTGTG
ATGATTGTTGGGTCTGGTTCTTTCCCACTGTTAACCACAACAGTGTCTAG
CAACAACGAGCTAATACTGATCTCAGAGGGCGAAAGATGTTCAGAAGTAA
GAGCCATTATTGATGAATCCATAGAGAGTGTTTGTGATGGAATACTATCA
GAATTTAAGAAGCTCGATGTCATATAAAGAGATGTCTGTACGCTTGATTC
AGAAGGTGGCGGAAGGGTGGATGATTCAATGGGTGTTCCAACAAGGGCGG
AGATAgaaccaaagaaaatttctcGTTTCACGCGAATATGTCCTCGCACT
AAATGCCATTGAAAGTTGCTACCTATATCTCGACGTTTCCGATGATTTTG
TTGAGAGTGCTTcagttttttcaatatttctgtATGATTATAAACATTTG
TTGGTATAACCCATGAGAAGAGTGTCTTGTTGTTTAGTGAAATTTCTGAC
ACATCCGAANTTTTGTTGGTATAACCCATGAAAAGAGTGTCTTGTTGTTG
CGTGAATTTTCTGACACATCCGAAGAAACAACTTCTAATGAATGTAATTG
TTTATAAAAGACATGAGGATGATCTTCTGGTAGCACTTGTAATGAATGAA
GTGGTAATCCAATGTTTCTGGATAAGCCTTCACCGATATCTAACAAATCA
TCTCGTTTGTCTGTTGGTAATATTACAGTCAGAATGTGAAACCTGGCATC
TTCATCTTTCTTGGTCAGATTCGAAGCACTGGTGTAGGATTGAATGCTTT
TTGAAGATACTTTCAGTATTCTCAATTCATATTGTATGGAATGACAGAGT
TTAATATAGTTGCCAAAAGGAGCACCAAAAATGAGAATGATAAAAAGATA
TCTGTCCTCGGTGGGTGGCAGTCCATGTATAATGTCATCATTTATTTGCA
ACCAAGTTGATGCATCCCCAATCTGGTCGATTATCTGAAGTAAGTGAAAT
AAAGACAGAAAATTGTGAgacttttaaaaagaattttcaaaatttc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007865-exon-sc0000080-1491911889:650743..650766 | TCONS_00007865-exon-sc0000080-1491911889:650743..650766 | Clytia hemisphaerica | exon |
| TCONS_00007865-exon-sc0000080-1510915933:650743..650766 | TCONS_00007865-exon-sc0000080-1510915933:650743..650766 | Clytia hemisphaerica | exon |
| TCONS_00007865-exon-sc0000080-1575043694:650743..650766 | TCONS_00007865-exon-sc0000080-1575043694:650743..650766 | Clytia hemisphaerica | exon |
| TCONS_00007865-exon-sc0000080-1491911889:651062..653894 | TCONS_00007865-exon-sc0000080-1491911889:651062..653894 | Clytia hemisphaerica | exon |
| TCONS_00007865-exon-sc0000080-1510915933:651062..653894 | TCONS_00007865-exon-sc0000080-1510915933:651062..653894 | Clytia hemisphaerica | exon |
| TCONS_00007865-exon-sc0000080-1575043694:651062..653894 | TCONS_00007865-exon-sc0000080-1575043694:651062..653894 | Clytia hemisphaerica | exon |
| TCONS_00007865-exon-sc0000080-1491911889:653960..654438 | TCONS_00007865-exon-sc0000080-1491911889:653960..654438 | Clytia hemisphaerica | exon |
| TCONS_00007865-exon-sc0000080-1510915933:653960..654438 | TCONS_00007865-exon-sc0000080-1510915933:653960..654438 | Clytia hemisphaerica | exon |
| TCONS_00007865-exon-sc0000080-1575043694:653960..654438 | TCONS_00007865-exon-sc0000080-1575043694:653960..654438 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000080 | supercontig | sc0000080:650743..654438 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016010 | dystrophin-associated glycoprotein complex |
| GO:0016020 | membrane |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007016 | cytoskeletal anchoring at plasma membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005509 | calcium ion binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007016 |
cytoskeletal anchoring at plasma membrane |
| cellular_component |
GO:0016010 |
dystrophin-associated glycoprotein complex |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0005509 |
calcium ion binding |
Blast
The following BLAST results are available for this feature:
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