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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007863 ID=TCONS_00007863|Name=TCONS_00007863|organism=Clytia hemisphaerica|type=transcript|length=1682bp
ATTGAATTTTATGATTCTTTTTTGGAACAACTTTATGAATTTTGTCAAAT
ACCTTTGTTTGGGGTTTCATACGCAGGTCACAACATAGCTGAGCACGAAA
GCGCACTGGTCAATCGTCTGGCACGTCAGATATTTCCACGAATCGAAACG
AACAAAGAGAAAGCATACACACTGGAAGAGCAGATCAACCACAAAGTACA
ATTCATCGAACAATATCTTCACAAAACACAGAATATCATCCTCATGGCGC
ACTCCCTTGGTTCTTATATGAGTTTATCTCTTCTCCAAAGGATTTCAAAA
GAATACAATATAGTTCGCGTCATTCTATTGTTCCCAGTCTTCGAACGAAC
AATGGAGACAACGAAAGGCAAAAGTTTTGTTCCACGTTTCCAAAATTTCA
GACATTCGTTAATACGGACAGGTCACGTTATTGAGAATTTACCGAACATT
TTGCGACAATCGATTTATTCGATAGCAGAACAGAGATATAAAGCTGATAA
TGCACAAGCCATGAAGAAAGCATTGAAAGCCTTGCTAACACCAACTTGTG
CACGAAACATCGCTCAAATGTTGGACGATTTATCACAGTTCGGTGATCAT
TCGAAATTCTCCGATATATTTGCAGAATTCGGTGAACGATTAACACTCTA
TTATGGTTCTAATGACGCATGGACACCTTTGGCTTATGGTCAGCGGCTGT
CCGAAAATTACCCTTTTGTCGATGTCCGGGTTGATGAGTATGTTATCCAA
CATTGTCTTGTTTTAGAAAGTTGTTTCAAATTATCGAAAATTGTTGCTTC
GTTGattgatttaagaaaaattgacTACACTGTCCGAGTGATCAAAGTTC
GAAGTAAAGATGAGaatgaaaatttgattactgaGAGATCTCAGAGCAGT
CATTCATTCAGCTCACATACCAGTGAGAAAGATGGCAGTTTACCAACCAT
ATGTCTTTAATCTCTATGgtaaaaattttgttgatttgcTCAACAATGTG
CATCTCAACAATATATGTCGATGTCCTAGCATATGTCTTTAACACGCAAT
ACTTGATGAGTATGTTATCACCAAAGTTACATTTCCAGAAAAGCAGGGAA
ACAACAAGTAGAAGAGACGGCTCACAAGCTACACACGTTGTTTTCATGGA
TATAAAGAACACACAATGTTCATGACACGTTACGAATACAATTCACCAGA
AATTCCAGACACAAAACCAAAGTGACAAATCCAATAGAAGCTCCGGTAAA
GACGAAAAGTCCACCGAAATATCGCCACGTGAAAGAACTGACGTCGTTCT
CCGTTTGTTCACAAGCTGTGTACCACAACCAACGATCTAGCAGTTCCGCC
ATTTTGCCCGTCTCAAAAGTGTTCAGGATTTCCTGCGAGAATGGCTCTTT
CCAGGGCGAGTTCTTCGGTACAATGAAAGCACTGAATATGGATTTCCGTT
TCTCTTTGTAAAGTCTTAGTTTATGGCAGAATTGTGGGAGTTGTGAGAGA
TATTTCAAGAATTTGTAATCTCCAATATAACCATCCAATGATCTGATAAA
GGACGAAAAAACAATAATCAAAACCAAATCagcatttttttatcaaacga
TTCCCAACAGTTCCAATTTCAATCTAAAcagccctgtctcacagccctag
tgaaactttttccaacaGTAAaaatttccatc Run BLAST on NCBI protein sequence of TCONS_00007863-protein >TCONS_00007863-protein ID=TCONS_00007863-protein|Name=TCONS_00007863-protein|organism=Clytia hemisphaerica|type=polypeptide|length=319bp
IEFYDSFLEQLYEFCQIPLFGVSYAGHNIAEHESALVNRLARQIFPRIET
NKEKAYTLEEQINHKVQFIEQYLHKTQNIILMAHSLGSYMSLSLLQRISK
EYNIVRVILLFPVFERTMETTKGKSFVPRFQNFRHSLIRTGHVIENLPNI
LRQSIYSIAEQRYKADNAQAMKKALKALLTPTCARNIAQMLDDLSQFGDH
SKFSDIFAEFGERLTLYYGSNDAWTPLAYGQRLSENYPFVDVRVDEYVIQ
HCLVLESCFKLSKIVASLIDLRKIDYTVRVIKVRSKDENENLITERSQSS
HSFSSHTSEKDGSLPTICL Run BLAST on NCBI transcript from alignment at sc0000080:641310..644195+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007863 ID=TCONS_00007863|Name=TCONS_00007863|organism=Clytia hemisphaerica|type=transcript|length=2886bp|location=Sequence derived from alignment at sc0000080:641310..644195+ (Clytia hemisphaerica)
ATTGAATTTTATGATTCTTTTTTGGAACAACTTTATGAATTTTGTCAAAT
ACCTTTGTTTGGGGTTTCATACGCAGGTAAGAGTGTCCGAAAGATAAAGG
ATTTTGTCCGAGCACCGGTATTGTTAGTCATTTCAAACGTTTAAATCGAG
GTTTAAATGATATGATAAAAAGTTGTTTAGGGATATGGTCTTTTAAAATC
TATAAGGCGAGCCCATTtcgattagttgttttacggatccgaccgaccct
gaaattccaaaaattaaaattaaaatcaaatttattttggtaataaattt
ttatttcattgctttacagactccCAAATTTTGACCGACCGAcactcttt
tttgggtagcttggcccgaaaagcaacaaattaaattgtCCTCGCCtaag
agagaaaaaaacaataaagttTGAATATCAAATATAGCTTCAACATCCTA
GCTAAGAGCGCTATAATGCGACGGACGATGTAACTCGAATCTCACACTCT
TAACACCTTGCATTTTTTTCCAGGTCACAACATAGCTGAGCACGAAAGCG
CACTGGTCAATCGTCTGGCACGTCAGATATTTCCACGAATCGAAACGAAC
AAAGAGAAAGCATACACACTGGAAGAGCAGATCAACCACAAAGTACAATT
CATCGAACAATATCTTCACAAAACACAGAATATCATCCTCATGGCGCACT
CCCTTGGTTCTTATATGAGTTTATCTCTTCTCCAAAGGATTTCAAAAGAA
TACAATATAGTTCGCGTCATTCTATTGTTCCCAGTCTTCGAACGAACAAT
GGAGACAACGAAAGGCAAAAGTTTTGTTCCACGTTTCCAAAATTTCAGAC
ATTCGTTAATACGGACAGGTCACGTTATTGAGAATTTACCGAACATTTTG
CGACAATCGATTTATTCGATAGCAGAACAGAGATATAAAGCTGATAATGC
ACAAGCCATGAAGAAAGCATTGAAAGCCTTGCTAACACCAACTTGTGCAC
GAAACATCGCTCAAATGTTGGACGATTTATCACAGTTCGGTGATCATTCG
AAATTCTCCGATATATTTGCAGAATTCGGTGAACGATTAACACTCTATTA
TGGTTCTAATGACGCATGGACACCTTTGGCTTATGGTCAGCGGCTGTCCG
AAAATTACCCTTTTGTCGATGTCCGGGTTGATGAGTATGTTATCCAACAT
TGTCTTGTTTTAGAAAGTTGTTTCAAATTATCGAAAATTGTTGCTTCGTT
GattgatttaagaaaaattgacTACACTGTCCGAGTGATCAAAGTTCGAA
GTAAAGATGAGaatgaaaatttgattactgaGAGATCTCAGAGCAGGTCA
GTATTCATTTCACAATAAGAATATGTAAAttgttactcttaggttccaaa
taaactgGGGGAGGGGTtagaataaacgggggggggggggaaaattttcg
aaatttagggggacctaattgccggggggggggaaattgtacttctgaaa
acccaaaaataaggtaaatataggctaaaatcaggctttttggagcaaaa
taagggaaaatattcttaaaaatcctAACAAAGTCCGGGGGGGGTGGAAA
ATATTCGAAATTtagggggacctaattgccgggggttggaaattgtactt
ctgaaaacccaaaaataaggtaaatataggctaaaatcaggctttttgga
gcaaaataagggaaaatattcttaaaaatcctAACAaagtccgggggggt
tggaaaactttcgaaaaattagCAAAcgggagggggcgtttatttggaac
ctaagagtaaacgAATTTTCCCGTGAGTATCACAGTTTATCTCTCTTTAA
GTTCGACCTTTGACGACAGACTGTAAAATAGTTTTAATAGAAAAATAAGG
TTGTCATGGTTACTTTCGTTCTCTCAAAATGCTTACATAATGAAATTGCG
ATAATCTGCGATTTTCATGGTACACAAAGTTTACTTTCACAATaacgaaa
tttaaaaatgtctaaaaatacAAATCGTAGTATAGTAAAAATGAGTATTA
AATATCATCGTCCCCTCAGTTATAAAGACTTCATACATAAATTTCTTTTA
TAGTCATTCATTCAGCTCACATACCAGTGAGAAAGATGGCAGTTTACCAA
CCATATGTCTTTAATCTCTATGgtaaaaattttgttgatttgcTCAACAA
TGTGCATCTCAACAATATATGTCGATGTCCTAGCATATGTCTTTAACACG
CAATACTTGATGAGTATGTTATCACCAAAGTTACATTTCCAGAAAAGCAG
GGAAACAACAAGTAGAAGAGACGGCTCACAAGCTACACACGTTGTTTTCA
TGGATATAAAGAACACACAATGTTCATGACACGTTACGAATACAATTCAC
CAGAAATTCCAGACACAAAACCAAAGTGACAAATCCAATAGAAGCTCCGG
TAAAGACGAAAAGTCCACCGAAATATCGCCACGTGAAAGAACTGACGTCG
TTCTCCGTTTGTTCACAAGCTGTGTACCACAACCAACGATCTAGCAGTTC
CGCCATTTTGCCCGTCTCAAAAGTGTTCAGGATTTCCTGCGAGAATGGCT
CTTTCCAGGGCGAGTTCTTCGGTACAATGAAAGCACTGAATATGGATTTC
CGTTTCTCTTTGTAAAGTCTTAGTTTATGGCAGAATTGTGGGAGTTGTGA
GAGATATTTCAAGAATTTGTAATCTCCAATATAACCATCCAATGATCTGA
TAAAGGACGAAAAAACAATAATCAAAACCAAATCagcatttttttatcaa
acgaTTCCCAACAGTTCCAATTTCAATCTAAAcagccctgtctcacagcc
ctagtgaaactttttccaacaGTAAaaatttccatc Coding sequence (CDS) from alignment at sc0000080:641310..644195+ >TCONS_00007863 ID=TCONS_00007863|Name=TCONS_00007863|organism=Clytia hemisphaerica|type=CDS|length=2880bp|location=Sequence derived from alignment at sc0000080:641310..644195+ (Clytia hemisphaerica)
ATTGAATTTTATGATTCTTTTTTGGAACAACTTTATGAATTTTGTCAAAT
ACCTTTGTTTGGGGTTTCATACGCAGGTCACAACATAGCTGAGCACGAAA
GCGCACTGGTCAATCGTCTGGCACGTCAGATATTTCCACGAATCGAAACG
AACAAAGAGAAAGCATACACACTGGAAGAGCAGATCAACCACAAAGTACA
ATTCATCGAACAATATCTTCACAAAACACAGAATATCATCCTCATGGCGC
ACTCCCTTGGTTCTTATATGAGTTTATCTCTTCTCCAAAGGATTTCAAAA
GAATACAATATAGTTCGCGTCATTCTATTGTTCCCAGTCTTCGAACGAAC
AATGGAGACAACGAAAGGCAAAAGTTTTGTTCCACGTTTCCAAAATTTCA
GACATTCGTTAATACGGACAGGTCACGTTATTGAGAATTTACCGAACATT
TTGCGACAATCGATTTATTCGATAGCAGAACAGAGATATAAAGCTGATAA
TGCACAAGCCATGAAGAAAGCATTGAAAGCCTTGCTAACACCAACTTGTG
CACGAAACATCGCTCAAATGTTGGACGATTTATCACAGTTCGGTGATCAT
TCGAAATTCTCCGATATATTTGCAGAATTCGGTGAACGATTAACACTCTA
TTATGGTTCTAATGACGCATGGACACCTTTGGCTTATGGTCAGCGGCTGT
CCGAAAATTACCCTTTTGTCGATGTCCGGGTTGATGAGTATGTTATCCAA
CATTGTCTTGTTTTAGAAAGTTGTTTCAAATTATCGAAAATTGTTGCTTC
GTTGattgatttaagaaaaattgacTACACTGTCCGAGTGATCAAAGTTC
GAAGTAAAGATGAGaatgaaaatttgattactgaGAGATCTCAGAGCAGT
CATTCATTCAGCTCACATACCAGTGAGAAAGATGGCAGTTTACCAACCAT
ATGTCTTTAAATTGAATTTTATGATTCTTTTTTGGAACAACTTTATGAAT
TTTGTCAAATACCTTTGTTTGGGGTTTCATACGCAGGTCACAACATAGCT
GAGCACGAAAGCGCACTGGTCAATCGTCTGGCACGTCAGATATTTCCACG
AATCGAAACGAACAAAGAGAAAGCATACACACTGGAAGAGCAGATCAACC
ACAAAGTACAATTCATCGAACAATATCTTCACAAAACACAGAATATCATC
CTCATGGCGCACTCCCTTGGTTCTTATATGAGTTTATCTCTTCTCCAAAG
GATTTCAAAAGAATACAATATAGTTCGCGTCATTCTATTGTTCCCAGTCT
TCGAACGAACAATGGAGACAACGAAAGGCAAAAGTTTTGTTCCACGTTTC
CAAAATTTCAGACATTCGTTAATACGGACAGGTCACGTTATTGAGAATTT
ACCGAACATTTTGCGACAATCGATTTATTCGATAGCAGAACAGAGATATA
AAGCTGATAATGCACAAGCCATGAAGAAAGCATTGAAAGCCTTGCTAACA
CCAACTTGTGCACGAAACATCGCTCAAATGTTGGACGATTTATCACAGTT
CGGTGATCATTCGAAATTCTCCGATATATTTGCAGAATTCGGTGAACGAT
TAACACTCTATTATGGTTCTAATGACGCATGGACACCTTTGGCTTATGGT
CAGCGGCTGTCCGAAAATTACCCTTTTGTCGATGTCCGGGTTGATGAGTA
TGTTATCCAACATTGTCTTGTTTTAGAAAGTTGTTTCAAATTATCGAAAA
TTGTTGCTTCGTTGattgatttaagaaaaattgacTACACTGTCCGAGTG
ATCAAAGTTCGAAGTAAAGATGAGaatgaaaatttgattactgaGAGATC
TCAGAGCAGTCATTCATTCAGCTCACATACCAGTGAGAAAGATGGCAGTT
TACCAACCATATGTCTTTAAATTGAATTTTATGATTCTTTTTTGGAACAA
CTTTATGAATTTTGTCAAATACCTTTGTTTGGGGTTTCATACGCAGGTCA
CAACATAGCTGAGCACGAAAGCGCACTGGTCAATCGTCTGGCACGTCAGA
TATTTCCACGAATCGAAACGAACAAAGAGAAAGCATACACACTGGAAGAG
CAGATCAACCACAAAGTACAATTCATCGAACAATATCTTCACAAAACACA
GAATATCATCCTCATGGCGCACTCCCTTGGTTCTTATATGAGTTTATCTC
TTCTCCAAAGGATTTCAAAAGAATACAATATAGTTCGCGTCATTCTATTG
TTCCCAGTCTTCGAACGAACAATGGAGACAACGAAAGGCAAAAGTTTTGT
TCCACGTTTCCAAAATTTCAGACATTCGTTAATACGGACAGGTCACGTTA
TTGAGAATTTACCGAACATTTTGCGACAATCGATTTATTCGATAGCAGAA
CAGAGATATAAAGCTGATAATGCACAAGCCATGAAGAAAGCATTGAAAGC
CTTGCTAACACCAACTTGTGCACGAAACATCGCTCAAATGTTGGACGATT
TATCACAGTTCGGTGATCATTCGAAATTCTCCGATATATTTGCAGAATTC
GGTGAACGATTAACACTCTATTATGGTTCTAATGACGCATGGACACCTTT
GGCTTATGGTCAGCGGCTGTCCGAAAATTACCCTTTTGTCGATGTCCGGG
TTGATGAGTATGTTATCCAACATTGTCTTGTTTTAGAAAGTTGTTTCAAA
TTATCGAAAATTGTTGCTTCGTTGattgatttaagaaaaattgacTACAC
TGTCCGAGTGATCAAAGTTCGAAGTAAAGATGAGaatgaaaatttgatta
ctgaGAGATCTCAGAGCAGTCATTCATTCAGCTCACATACCAGTGAGAAA
GATGGCAGTTTACCAACCATATGTCTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007863-exon-sc0000080-1491911889:641310..641385 | TCONS_00007863-exon-sc0000080-1491911889:641310..641385 | Clytia hemisphaerica | exon |
| TCONS_00007863-exon-sc0000080-1510915933:641310..641385 | TCONS_00007863-exon-sc0000080-1510915933:641310..641385 | Clytia hemisphaerica | exon |
| TCONS_00007863-exon-sc0000080-1575043694:641310..641385 | TCONS_00007863-exon-sc0000080-1575043694:641310..641385 | Clytia hemisphaerica | exon |
| TCONS_00007863-exon-sc0000080-1491911889:641833..642655 | TCONS_00007863-exon-sc0000080-1491911889:641833..642655 | Clytia hemisphaerica | exon |
| TCONS_00007863-exon-sc0000080-1510915933:641833..642655 | TCONS_00007863-exon-sc0000080-1510915933:641833..642655 | Clytia hemisphaerica | exon |
| TCONS_00007863-exon-sc0000080-1575043694:641833..642655 | TCONS_00007863-exon-sc0000080-1575043694:641833..642655 | Clytia hemisphaerica | exon |
| TCONS_00007863-exon-sc0000080-1491911889:643413..644195 | TCONS_00007863-exon-sc0000080-1491911889:643413..644195 | Clytia hemisphaerica | exon |
| TCONS_00007863-exon-sc0000080-1510915933:643413..644195 | TCONS_00007863-exon-sc0000080-1510915933:643413..644195 | Clytia hemisphaerica | exon |
| TCONS_00007863-exon-sc0000080-1575043694:643413..644195 | TCONS_00007863-exon-sc0000080-1575043694:643413..644195 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000080 | supercontig | sc0000080:641310..644195 + |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00007863 vs. Swiss-Prot (Human)
Match: LDAH (Lipid droplet-associated hydrolase OS=Homo sapiens GN=LDAH PE=1 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 1.121e-23 Identity = 75/281 (26.69%), Postives = 135/281 (48.04%), Query Frame = 1
Query: 7 FYDSFLEQLYEFC--QIPLFGVSYAGHNIAEHESALV----NRLARQIFPRIETNKEKAYTLEEQINHKVQFIEQYLHKTQNIILMAHSLGSYMSLSLLQRISKEYNIVRVILLFPVFERTMETTKGKSFVPRFQNFRHSLIRTGH-VIENLPNILRQSIYSIAEQRYKADNAQXXXXXXXXXXTPTCARNIAQMLDDLSQFGDHSKFSDIFAEFGERLTLYYGSNDAWTPLAYGQRLSENYPFVDVRVDEYVIQHCLVLESCFKLSKIVASLI--DLRKI 822
FY F + LY + P++ +S+AGH +A + ++ + A++I + Y L QI HK+ F+ ++ K ++L+ HS+GSY +L +L+R+ E ++R LLFP ER E+ G+ P FR+ L TG+ +++ P ++ + Q +N + +L P C N A L + + E +LT YYG+ D W P Y + + +++P D+R+ E I H + +++ ++A + DL K+
Sbjct: 59 FYVPFAKALYSLTNRRFPVWTISHAGHALAPKDKKILTTSEDSNAQEI--------KDIYGLNGQIEHKLAFLRTHVPKDMKLVLIGHSIGSYFTLQMLKRVP-ELPVIRAFLLFPTIERMSESPNGRIATPLLCWFRYVLYVTGYLLLKPCPETIKSLLIRRGLQVMNLENE----FSPLNILEPFCLAN-AAYLGGQEMMEVVKRDDETIKEHLCKLTFYYGTIDPWCPKEYYEDIKKDFPEGDIRLCEKNIPHAFITHFNQEMADMIADSLKDDLSKM 325
The following BLAST results are available for this feature:
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