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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007859 ID=TCONS_00007859|Name=TCONS_00007859|organism=Clytia hemisphaerica|type=transcript|length=2424bp
AACAAAGTGTCTGATTAATTTCTCCTGAGATTCCATGCTGTTATTTCGTC
ATCCTTCTGcgatgacaaagaaaaaaagtgctCTCTATACAAAAGCTTGT
TAGATTGAAATTGTAAAAGATTGAAATTGGTTGTTAGCCTTTGcaagttc
aatattttttactCTTTGAAAGATTTGTATGGTTGATAATTTTCTACCGG
ACGATTGatagatatttttttctttcgacTTTTTTCTGAGGAGTTTATCC
AGCAGCCGTTGATTCAATCACTCTACAACACGAACTTGAAGAAGAAgatt
ataaaaagaagaaaagacttTTCATTCCTTGGAGCAAACGAGCTTCTTTC
ATAGCAGCTACTTATATAGAGAATCCTGAAACACTCACTCAACCACCTGT
AGTTACGACTTTCCAACGTCGAAAACAAGGACGTTTCGCATCTTTTCGTC
GTACACGATCAACAATCACAACTGAAACGACCACACAAAGTGTTTCTTCG
ACCAGAAAGTTCAATTTACGGCGCATGAATAGTTTAGATCGTAATACGAT
ACGATCGTTTCGAAGCAGCGCGTCCACTTTACGGAGACAAAACAGTGAGA
ATAACGCTACTTGGAAAAAGAAGAGAATGAGCTCGGTTTCTTCGCTACAA
AAACAACAGAGCTTTGATGCTGGCTCCTTAAACCATCGGGATGCACGAGC
TCTTAAACAACGAAAAAGTAATCGCTATAAAGTGGACGGTGCTCAAAGTT
TCTTTGATAGATACCAAGATACTTTACGAGTTGATATGTTCTCCGTTGAC
TTGAATAAACTGACGATAAAAAGCAATAAAAGNGGACGAGCTTTTTGTTC
ATAAAATCATATTAAATTTGATATCACTTTGATAAGCTTATAGACGAGCC
AGGAGCTGTTTTATGTCATTTCTTTTCTTTGCTTCAAATAATAAGGAGTT
TATCCAGCAGCCGTTGATTCAATCACTCTACAACACGAACTTGAAGAAGA
AgattataaaaagaagaaaagacttTTCATTCCTTGGAGCAAACGAGCTT
CTTTCATAGCAGCTACTTATATAGAGAATCCTGAAACACTCACTCAACCA
CCTGTAGTTACGACTTTCCAACGTCGAAAACAAGGACGTTTCGCATCTTT
TCGTCGTACACGATCAACAATCACAACTGAAACGACCACACAAAGTGTTT
CTTCGACCAGAAAGTTCAATTTACGGCGCATGAATAGTTTAGATCGTAAT
ACGATACGATCGTTTCGAAGCAGCGCGTCCACTTTACGGAGACAAAACAG
TGAGAATAACGCTACTTGGAAAAAGAAGAGAATGAGCTCGGTTTCTTCGC
TACAAAAACAACAGAGCTTTGATGCTGGCTCCTTAAACCATCGGGATGCA
CGAGCTCTTAAACAACGAAAAAGTAATCGCTATAAAGTGGACGGTGCTCA
AAGTTTCTTTGATAGATACCAAGATACTTTACGAGTTGATATGTTCTCCG
TTGACTTGAATAAACTGACGATAAAAAGCAATAAAAGTGACGGTTCATCG
ACCACAAAATCCGTCACCCCTACGACCCCTCTCACACCGAACTCTACCGA
CGATAAAGACTCGGTTTTCGATTACAGCGACGAACATTTATCGAAAGAAT
TTGATTACAAACTTGTCGGTAAAACGTACCAACAACTATTTTACATTCGT
TCAAGGCTTTCAGCGAGTGCGCGTAAAAGTGAATTTATGTGTGATGGTTC
GTTTGGATGTTCTGCTTGTGATCTGCAATGTTACCCTGAATGGACGAATT
CGTAAAAACTTGAACAAGAGAAAGTGGTAGAATGAGATAATGTTATGACT
TGTGGATCGCCTTTGGTGAGATAAAACGGTGGCCTGATccaaaaactgtt
tttctttacgGCAAGTGACTATACTTGAAACTAATGAGCGTGAGAAACGA
AAGTACAATCCAGTCTATAAGATCTTGTTTGTTTAGAAGGTTACCAAGGG
GTCAATGAACGTTCTcagtgaaaatgtttttgatctCTCTACTTGATCCT
AAATGAGGAAGGAAATCAATTTATGGAATTAAAGAGAAAAGTTGAACATA
AATTTCTGATGGACTGTCAAGGAAGTCATTTTCTGTCAGCCATGTAAGTT
GTCACAATGAATGTACGAGTTTTGCTGTGAATCTTTATTTTGAGATGTTT
CGATCTCAACTGTCAAGTTACCATCAATATGAACCTTTGCTAACTAATTC
ATAAAAGAATTCGCCATTTTAGAAGGATTTCGATTTTTGTCCGAAATATT
ATTTATATCGTCCAATGTCTAACAATAtttgtaaatatatttttcgCAGC
AATATTTTTCCTTTGTAGTTATTTTCTATTGTACATAAATacggaaaata
aattttgaaaatttgacaaactaa Run BLAST on NCBI transcript from alignment at sc0000080:634719..640196+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007859 ID=TCONS_00007859|Name=TCONS_00007859|organism=Clytia hemisphaerica|type=transcript|length=5478bp|location=Sequence derived from alignment at sc0000080:634719..640196+ (Clytia hemisphaerica)
AACAAAGTGTCTGATTAATTTCTCCTGAGATTCCATGCTGTTATTTCGTC
ATCCTTCTGcgatgacaaagaaaaaaagtgctCTCTATACAAAAGCTTGT
TAGATTGAAATTGTAAAAGATTGAAATTGGTTGTTAGCCTTTGcaagttc
aatattttttactCTTTGAAAGATTTGTATGGTTGATAATTTTCTACCGG
ACGATTGatagatatttttttctttcgacTTTTTTCTGAGGTAAGATATC
ACTTTCCGTCTTATCTTGTTCAGAAagcctcaaaattttcttcttttttt
gcagATCTTTTAATCCATGACAGGTCTGCTACAGATGAATTTACATTTTT
GTTGGAGTTGTTTGGCATTAAGCTTACCAGTAACCGACCTTGCGGTTTAC
AAACTTTTTACTTCTTTCTGTAGAAAAGAAAATGTGTTTTTATGTGACAT
GCTTTTGAAGTTATGAGATCATTGGCATAATACGCTTGTTGATGCAACAC
TTCCTTATATGACTCTCGTTATTTGGATATTTTATCAACCTTGTAGCCTT
CCTGGGCTTCATTGTGAAAATCCTCTTATGTCTAGTAAGCTGTAAGTTAA
GTAATATCTCGTATGAATAACACCTGATTTGTGTCTTTCGGCAAAACTTT
GTCAATGTCCTCTCGAACATGTCGTTAGTTTTTGTCTTGGTCTTTTACAA
TATATTGAATTTCGATAATCCTTTCCAGTCATTCATTAGTCATCCATCTC
AAGATGTGTGTCCAAGCTCTCTTTAtatctcttttatatttttctctttt
tacatttaaaagttttaatggAAACATCTCTGTATATTGTCTCCATAATT
TGAATGTCAAGCAGATCAATAAtctttcgaattacagagaattTGAGTTA
TAGAGAGGCAAATTATCctggttcgagttatagagaggcGAATTATCCTG
GCTCGAGTTATAGAGAGGCGAATTATCctggttcgagttatagagactct
acTATACTTCCATTGTTTAACTTATTCTGTATCAAAAATAGGAAATATTT
CTGAGGGAAAAGCTTTTGCACCGACAGGACTTGACGTATAACAGTCTGTC
cagtcaaaaatttttgatgaggaAATGAGTTTTAAGCGGTCTTTCTTGGA
CAAACTACTCTTCCTTTTATAGATTCCTGGTTCAGTAATTAATTTCGATC
AGATTTTCTAAACTATATTTATACTTTTGCTTGCTATCACTTCAGGGggc
ttttttaaagattttggcATCAACAGCGTTGAAATATTTCGATTTCCATC
GCATTTTCTACAAACTTCTTGCCAACCGCACCAATTGGCTGATGAGGAAA
TTGAAAGATTCTAATGACTCTCGTTTAGATGGGACCACCCTTTCACCTCT
AAAACGAGAAGAATTTCTCAACAATTGACAAGATATATAAGTCAGTTTTG
GATTTAATTTGTTAATGATGTTATTGGGTGGTTACCAGACCTCCTATTGA
TATGAttgttttcgaaagtttttCATCGATTAATTTTggaatgaagaaaa
aataacagaTTTTGGCAATCTAGAAATTTTACTCGAATCTTCAACACATA
ATGCTTTGTGATTTCTAAATGCTAAATTCAAAATTGTCATcgaatttcat
tttgaaatttgaatcttCACATAGACTTTTGCAAGAGTTCTGCCTTCAGG
CAAATCAATCTATAGTATCTGAGAACTTTTTAAGGGTCAAATTTCAGTCT
GTTTGAAACATTAAACATTAAGAAGGGGCTTTTTGGAGTATCGTTTCGTC
ATATCATCGATAACTTGAACATTTGTCTGCTGACGTTTGCAGTGTGATTG
ATAAGTGATTCTTAAAGCGATTATTGTCATCACATTTTTTTACTGATTTA
TGATTTCGCATGTGTTTCTTTAGAGTGGTCATGAGAAATCTTGTTTATGT
CCTTTCAGCAAATCTTGTTATTGCTACAAGTCGTGCTGTTGGTGTATTTT
CCCTTATAATAGTCTACTTGTCAAGACAGAAGGGTCTGGAATAAATATCG
TTTACTCATATGGCCTGGTTGTTACGCGGGAAGGGTCCTGTTGCTTCAAA
CACGCTGAGAAGGCATGAACGTCGTTTGGCAAAAGAGACTTGAATAGAAT
CTTGGatataattttttctagccaGCGAACGTGACTGTCATGAGGTCATC
TTTTTATTGTGTTATTCTTAAGTTTGATGTATTTTCATGTGTGGAAAAAA
ATAATCTCAGTTGACGAGGGATGTACATTTTGCCAAAAAGATTCATGTCA
TGAAAGATATTGTTTGTCGCTTGAAGTCTTCTTAGAGAGAAATTGTTATT
GTTGAACACCTCACTCTACAAAGCCTCTTGTTTGTCACCTCTTGCACTGG
TCTGTGGGACAAAGTCCTtctcaaccaatcagaattgAGCATTTGACTTC
TCTCATCAAATGAGTTGTTCCACTTGATACAATTTCTCAAATGACGTCAT
CTCCGCTTCTCTCAGCGCTACTTATTATATAGATGGCAGGACGAGCTTTT
TGTTCATAAAATCATATTAAATTTGATATCACTTTGATAAGCTTATAGAC
GAGCCAGGAGCTGTTTTATGTCATTTCTTTTCTTTGCTTCAAATAATAAG
GTAAATGATATGTTCTCGGTGGTCAAGTCATGAGAATTTCTCGGTTTGGA
TGATGAGTTTTGTAAGTTGCGTAAAGGTGTCGTAACTGATAGTAAAAGTT
CAAGCCAAAAAAGGGTTTTTACCTTTGAGGAAAACGAGTTGAACAAGTTT
GTGCTTTTATGATAATTAGTTATGATAAGCATGGCGTAACTGCTtgatat
tgttttgttttgagaacGTCAACTTTTGCATTGATGTCATTTAAATAGTG
CATTGTATAACGACCACTAATTATTTTCCTCTATCGCCTTGTGTTTATAA
CTTTCACTGTTTGTTTTTATAGGAGTTTATCCAGCAGCCGTTGATTCAAT
CACTCTACAACACGAACTTGAAGAAGAAgattataaaaagaagaaaagac
ttTTCATTCCTTGGAGCAAACGAGCTTCTTTCATAGCAGCTACTTATATA
GAGAATCCTGAAACACTCACTCAACCACCTGTAGTTACGACTTTCCAACG
TCGAAAACAAGGACGTTTCGCATCTTTTCGTCGTACACGATCAACAATCA
CAACTGAAACGACCACACAAAGTGTTTCTTCGACCAGAAAGTTCAATTTA
CGGCGCATGAATAGTTTAGATCGTAATACGATACGATCGTTTCGAAGCAG
CGCGTCCACTTTACGGAGACAAAACAGTGAGAATAACGCTACTTGGAAAA
AGAAGAGAATGAGCTCGGTTTCTTCGCTACAAAAACAACAGAGCTTTGAT
GCTGGCTCCTTAAACCATCGGGATGCACGAGCTCTTAAACAACGAAAAAG
TAATCGCTATAAAGTGGACGGTGCTCAAAGTTTCTTTGATAGATACCAAG
ATACTTTACGAGTTGATATGTTCTCCGTTGACTTGAATAAACTGACGATA
AAAAGCAATAAAAGNGGACGAGCTTTTTGTTCATAAAATCATATTAAATT
TGATATCACTTTGATAAGCTTATAGACGAGCCAGGAGCTGTTTTATGTCA
TTTCTTTTCTTTGCTTCAAATAATAAGGTAAATGATATGTTCTCGGTGGT
CAAGTCATGAGAATTTCTCGGTTTGGATGATGAGTTTTGTAAGTTGCGTA
AAGGTGTCGTAACTGATAGTAAAAGTTCAAGCCAAAAAAGGGTTTTTACC
TTTGAGGAAAACGAGTTGAACAAGTTTGTGCTTTTATGATAATTAGTTAT
GATAAGCATGGCGTAACTGCTtgatattgttttgttttgagaacGTCAAC
TTTTGCATTGATGTCATTTAAATAGTGCATTGTATAACGACCACTAATTA
TTTTCCTCTATCGCCTTGTGTTTATAACTTTCACTGTTTGTTTTTATAGG
AGTTTATCCAGCAGCCGTTGATTCAATCACTCTACAACACGAACTTGAAG
AAGAAgattataaaaagaagaaaagacttTTCATTCCTTGGAGCAAACGA
GCTTCTTTCATAGCAGCTACTTATATAGAGAATCCTGAAACACTCACTCA
ACCACCTGTAGTTACGACTTTCCAACGTCGAAAACAAGGACGTTTCGCAT
CTTTTCGTCGTACACGATCAACAATCACAACTGAAACGACCACACAAAGT
GTTTCTTCGACCAGAAAGTTCAATTTACGGCGCATGAATAGTTTAGATCG
TAATACGATACGATCGTTTCGAAGCAGCGCGTCCACTTTACGGAGACAAA
ACAGTGAGAATAACGCTACTTGGAAAAAGAAGAGAATGAGCTCGGTTTCT
TCGCTACAAAAACAACAGAGCTTTGATGCTGGCTCCTTAAACCATCGGGA
TGCACGAGCTCTTAAACAACGAAAAAGTAATCGCTATAAAGTGGACGGTG
CTCAAAGTTTCTTTGATAGATACCAAGATACTTTACGAGTTGATATGTTC
TCCGTTGACTTGAATAAACTGACGATAAAAAGCAATAAAAGTGACGGTTC
ATCGACCACAAAATCCGTCACCCCTACGACCCCTCTCACACCGAACTCTA
CCGACGATAAAGACTCGGTTTTCGATTACAGCGACGAACATTTATCGAAA
GAATTTGATTACAAACTTGTCGGTAAAACGTACCAACAACTATTTTACAT
TCGTTCAAGGCTTTCAGCGAGTGCGCGTAAAAGTGAATTTATGTGTGATG
GTTCGTTTGGATGTTCTGCTTGTGATCTGCAATGTTACCCTGAATGGACG
AATTCGTAAAAACTTGAACAAGAGAAAGTGGTAGAATGAGATAATGTTAT
GACTTGTGGATCGCCTTTGGTGAGATAAAACGGTGGCCTGATccaaaaac
tgtttttctttacgGCAAGTGACTATACTTGAAACTAATGAGCGTGAGAA
ACGAAAGTACAATCCAGTCTATAAGATCTTGTTTGTTTAGAAGGTTACCA
AGGGGTCAATGAACGTTCTcagtgaaaatgtttttgatctCTCTACTTGA
TCCTAAATGAGGAAGGAAATCAATTTATGGAATTAAAGAGAAAAGTTGAA
CATAAATTTCTGATGGACTGTCAAGGAAGTCATTTTCTGTCAGCCATGTA
AGTTGTCACAATGAATGTACGAGTTTTGCTGTGAATCTTTATTTTGAGAT
GTTTCGATCTCAACTGTCAAGTTACCATCAATATGAACCTTTGCTAACTA
ATTCATAAAAGAATTCGCCATTTTAGAAGGATTTCGATTTTTGTCCGAAA
TATTATTTATATCGTCCAATGTCTAACAATAtttgtaaatatatttttcg
CAGCAATATTTTTCCTTTGTAGTTATTTTCTATTGTACATAAATacggaa
aataaattttgaaaatttgacaaactaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007859-exon-sc0000080-1491911889:634719..634958 | TCONS_00007859-exon-sc0000080-1491911889:634719..634958 | Clytia hemisphaerica | exon |
| TCONS_00007859-exon-sc0000080-1510915933:634719..634958 | TCONS_00007859-exon-sc0000080-1510915933:634719..634958 | Clytia hemisphaerica | exon |
| TCONS_00007859-exon-sc0000080-1575043694:634719..634958 | TCONS_00007859-exon-sc0000080-1575043694:634719..634958 | Clytia hemisphaerica | exon |
| TCONS_00007859-exon-sc0000080-1491911889:637691..638395 | TCONS_00007859-exon-sc0000080-1491911889:637691..638395 | Clytia hemisphaerica | exon |
| TCONS_00007859-exon-sc0000080-1510915933:637691..638395 | TCONS_00007859-exon-sc0000080-1510915933:637691..638395 | Clytia hemisphaerica | exon |
| TCONS_00007859-exon-sc0000080-1575043694:637691..638395 | TCONS_00007859-exon-sc0000080-1575043694:637691..638395 | Clytia hemisphaerica | exon |
| TCONS_00007859-exon-sc0000080-1491911889:638718..640196 | TCONS_00007859-exon-sc0000080-1491911889:638718..640196 | Clytia hemisphaerica | exon |
| TCONS_00007859-exon-sc0000080-1510915933:638718..640196 | TCONS_00007859-exon-sc0000080-1510915933:638718..640196 | Clytia hemisphaerica | exon |
| TCONS_00007859-exon-sc0000080-1575043694:638718..640196 | TCONS_00007859-exon-sc0000080-1575043694:638718..640196 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000080 | supercontig | sc0000080:634719..640196 + |
Blast
The following BLAST results are available for this feature:
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