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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007857 ID=TCONS_00007857|Name=TCONS_00007857|organism=Clytia hemisphaerica|type=transcript|length=1716bp
ATTTGTTTGCATGTTTCTTTCATAAACTCGAGGAAGAGATTTTCATATTC
AAGAGATATTGCTATTAATATGTCAGCCGGTTGTCTTGACTTAAAAAGAA
GCCTCTCGGGCTtatgttttgaaaactttcctaCAGACTGATTTTAAGTT
CTCTATAAGAGAAGTCTTCAAGATTTACCGAGTGGGAAATGATCGAATTT
TTCTTGCATTCTCTACACTCGTTGAAAGAAATCTTCAGAGTTTATCCAGC
AGCCGTTGATTCAATCACTCTACAACACGAACTTGAAGAAGAAgattata
aaaagaagaaaagacttTTCATTCCTTGGAGCAAACGAGCTTCTTTCATA
GCAGCTACTTATATAGAGAATCCTGAAACACTCACTCAACCACCTGTAGT
TACGACTTTCCAACGTCGAAAACAAGGACGTTTCGCATCTTTTCGTCGTA
CACGATCAACAATCACAACTGAAACGACCACACAAAGTGTTTCTTCGACC
AGAAAGTTCAATTTACGGCGCATGAATAGTTTAGATCGTAATACGATACG
ATCGTTTCGAAGCAGCGCGTCCACTTTACGGAGACAAAACAGTGAGAATA
ACGCTACTTGGAAAAAGAAGAGAATGAGCTCGGTTTCTTCGCTACAAAAA
CAACAGAGCTTTGATGCTGGCTCCTTAAACCATCGGGATGCACGAGCTCT
TAAACAACGAAAAAGTAATCGCTATAAAGTGGACGGTGCTCAAAGTTTCT
TTGATAGATACCAAGATACTTTACGAGTTGATATGTTCTCCGTTGACTTG
AATAAACTGACGATAAAAAGCAATAAAAGTGACGGTTCATCGACCACAAA
ATCCGTCACCCCTACGACCCCTCTCACACCGAACTCTACCGACGATAAAG
ACTCGGTTTTCGATTACAGCGACGAACATTTATCGAAAGAATTTGATTAC
AAACTTGTCGGTAAAACGTACCAACAACTATTTTACATTCGTTCAAGGCT
TTCAGCGAGTGCGCGTAAAAGTGAATTTATGTGTGATGGTTCGTTTGGAT
GTTCTGCTTGTGATCTGCAATGTTACCCTGAATGGACGAATTCGTAAAAA
CTTGAACAAGAGAAAGTGGTAGAATGAGATAATGTTATGACTTGTGGATC
GCCTTTGGTGAGATAAAACGGTGGCCTGATccaaaaactgtttttcttta
cgGCAAGTGACTATACTTGAAACTAATGAGCGTGAGAAACGAAAGTACAA
TCCAGTCTATAAGATCTTGTTTGTTTAGAAGGTTACCAAGGGGTCAATGA
ACGTTCTcagtgaaaatgtttttgatctCTCTACTTGATCCTAAATGAGG
AAGGAAATCAATTTATGGAATTAAAGAGAAAAGTTGAACATAAATTTCTG
ATGGACTGTCAAGGAAGTCATTTTCTGTCAGCCATGTAAGTTGTCACAAT
GAATGTACGAGTTTTGCTGTGAATCTTTATTTTGAGATGTTTCGATCTCA
ACTGTCAAGTTACCATCAATATGAACCTTTGCTAACTAATTCATAAAAGA
ATTCGCCATTTTAGAAGGATTTCGATTTTTGTCCGAAATATTATTTATAT
CGTCCAATGTCTAACAATAtttgtaaatatatttttcgCAGCAATATTTT
TCCTTTGTAGTTATTTTCTATTGTACATAAATacggaaaataaattttga
aaatttgacaaactaa Run BLAST on NCBI transcript from alignment at sc0000080:632852..640196+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007857 ID=TCONS_00007857|Name=TCONS_00007857|organism=Clytia hemisphaerica|type=transcript|length=7345bp|location=Sequence derived from alignment at sc0000080:632852..640196+ (Clytia hemisphaerica)
ATTTGTTTGCATGTTTCTTTCATAAACTCGAGGAAGAGATTTTCATATTC
AAGAGATATTGCTATTAATATGTCAGCCGGTTGTCTTGACTTAAAAAGAA
GCCTCTCGGGCTtatgttttgaaaactttcctaCAGACTGATTTTAAGTT
CTCTATAAGAGAAGTCTTCAAGATTTACCGAGTGGGAAATGATCGAATTT
TTCTTGCATTCTCTACACTCGTTGAAAGAAATCTTCAGTAAgtcaaatat
ttaatttctgTTTTAAAATGCTTCGTATTGAAACGTTTCTGGTAATGTTA
TGTCGTTCTCGTTTAGTTTTTCTCGGCTTTGAGCTAGTTTTTTTAGCTAT
ATGCGATAAGCTCTTCCTTCTCAGGCCTTGTTGATTTGATTTAAGCTACC
TCTCAACTATAGTAAACAATGTTTTTGGCTTCTTATCAATCCTTTGTTTT
GTTGGAGGTTTGGCTtgacgaaaaatatttcaagcttttttattcaattt
cagTTCGTGATGTTTTTTGAAACACTTTttaattctttgtttttatNGAA
AACATTTCaagcttttttattcaatttcagTTCGTGATGTTTTTTGAAAC
ACTTTttaattctttgtttttatgaCTCGTATTATTGCATACGTCTTTAG
CTCGATAATTATACTACGATAGGAAATTGAAGAATTTTATGAAGTATTTG
TGACGACGATACTCGTTCGGTCTGTATCAGAAAAATGCTCACAATAATAC
TTTGTGCATCTTTCATGCATGAGAGAATGCATTTTAAGATGATGCAAAGA
GCTTGAGATGAGTCTAGATGACGAATATATTGTGGCAGACCAACCTCCTT
CCTGATATACTCATGCACGCAAGTCGAACAATTTGTCAATATTCTATTCC
AAgacatcaaaacacaaaaaccaTTGAAAGAAGAGGAGGGTGATTCAATG
AGGTCCAATTTCAAAACATCATCAGTCATGATGCTAAAATGTACTTCAGA
TAGAGACAGAATGGAAAATCATACTTCATATTTCACTCTATAGATCACCA
AAGAGTGTTTGTCCCGTACAAAATCCTTTCTTTTGCAATGCAGATGATcc
gataaacatttttttatctttttgtagCTTGACCTTTCTCTATACCTCTT
GTCATTAGATTTTGCAATCACCTTTCTTCAGCATATGTTTCATATCATAA
TTTTTGACACCATCATTTTTTTGCCCCATTTTTATTGAgtttatggattt
ttgagaactATTATAACCTCTGTTTCTTTGCTCCGCTTGGTTTGGAGCCC
GTAGCAAAATTTGAGatgatttgtcaaaaaaccCTTAATTTCCAGGAAAG
GCGACTTTTAAACTTAACTTTTAGCTTATTTAGGAAAAATTCCAATGACC
TTCTAATCGGAAGGGTCCTTCCTACTGGCTACTGGCTTCCTACTTAAATC
CTACTCGTTTTGCACGCCCCTGTATCAATGATTGCTCTACTTAATTTACT
TCCACAGAATATAAATATCAAAATGTTGGACGATGGAGTAAATTATCAGA
TTTTACAATTACATTTAAGTATGTAAGTATGATAAAGATCTTTTACAGTG
ACTCCTATctctcaacaacaaaaaaagtcGGTCAAATTTGTCGACTCATT
ACATTCTGATATCCAGGAATTGAAATCTTTTTAAGATCTCTGAATGCAAT
TATTTCTTTGGCTCCTGTTCTTAATCCTATACGTTGACTACGGATTTTCA
TTCTCATTCTCTCTCTTATAACCTTATTTTATATCCTGCTAgctattatg
acgtcataaatatatcgactttgtttttgatgaaaattaattacaatttt
ttttctgcttaCAAGTTAACAAAGTGTCTGATTAATTTCTCCTGAGATTC
CATGCTGTTATTTCGTCATCCTTCTGcgatgacaaagaaaaaaagtgctC
TCTATACAAAAGCTTGTTAGATTGAAATTGTAAAAGATTGAAATTGGTTG
TTAGCCTTTGcaagttcaatattttttactCTTTGAAAGATTTGTATGGT
TGATAATTTTCTACCGGACGATTGatagatatttttttctttcgacTTTT
TTCTGAGGTAAGATATCACTTTCCGTCTTATCTTGTTCAGAAagcctcaa
aattttcttctttttttgcagATCTTTTAATCCATGACAGGTCTGCTACA
GATGAATTTACATTTTTGTTGGAGTTGTTTGGCATTAAGCTTACCAGTAA
CCGACCTTGCGGTTTACAAACTTTTTACTTCTTTCTGTAGAAAAGAAAAT
GTGTTTTTATGTGACATGCTTTTGAAGTTATGAGATCATTGGCATAATAC
GCTTGTTGATGCAACACTTCCTTATATGACTCTCGTTATTTGGATATTTT
ATCAACCTTGTAGCCTTCCTGGGCTTCATTGTGAAAATCCTCTTATGTCT
AGTAAGCTGTAAGTTAAGTAATATCTCGTATGAATAACACCTGATTTGTG
TCTTTCGGCAAAACTTTGTCAATGTCCTCTCGAACATGTCGTTAGTTTTT
GTCTTGGTCTTTTACAATATATTGAATTTCGATAATCCTTTCCAGTCATT
CATTAGTCATCCATCTCAAGATGTGTGTCCAAGCTCTCTTTAtatctctt
ttatatttttctctttttacatttaaaagttttaatggAAACATCTCTGT
ATATTGTCTCCATAATTTGAATGTCAAGCAGATCAATAAtctttcgaatt
acagagaattTGAGTTATAGAGAGGCAAATTATCctggttcgagttatag
agaggcGAATTATCCTGGCTCGAGTTATAGAGAGGCGAATTATCctggtt
cgagttatagagactctacTATACTTCCATTGTTTAACTTATTCTGTATC
AAAAATAGGAAATATTTCTGAGGGAAAAGCTTTTGCACCGACAGGACTTG
ACGTATAACAGTCTGTCcagtcaaaaatttttgatgaggaAATGAGTTTT
AAGCGGTCTTTCTTGGACAAACTACTCTTCCTTTTATAGATTCCTGGTTC
AGTAATTAATTTCGATCAGATTTTCTAAACTATATTTATACTTTTGCTTG
CTATCACTTCAGGGggcttttttaaagattttggcATCAACAGCGTTGAA
ATATTTCGATTTCCATCGCATTTTCTACAAACTTCTTGCCAACCGCACCA
ATTGGCTGATGAGGAAATTGAAAGATTCTAATGACTCTCGTTTAGATGGG
ACCACCCTTTCACCTCTAAAACGAGAAGAATTTCTCAACAATTGACAAGA
TATATAAGTCAGTTTTGGATTTAATTTGTTAATGATGTTATTGGGTGGTT
ACCAGACCTCCTATTGATATGAttgttttcgaaagtttttCATCGATTAA
TTTTggaatgaagaaaaaataacagaTTTTGGCAATCTAGAAATTTTACT
CGAATCTTCAACACATAATGCTTTGTGATTTCTAAATGCTAAATTCAAAA
TTGTCATcgaatttcattttgaaatttgaatcttCACATAGACTTTTGCA
AGAGTTCTGCCTTCAGGCAAATCAATCTATAGTATCTGAGAACTTTTTAA
GGGTCAAATTTCAGTCTGTTTGAAACATTAAACATTAAGAAGGGGCTTTT
TGGAGTATCGTTTCGTCATATCATCGATAACTTGAACATTTGTCTGCTGA
CGTTTGCAGTGTGATTGATAAGTGATTCTTAAAGCGATTATTGTCATCAC
ATTTTTTTACTGATTTATGATTTCGCATGTGTTTCTTTAGAGTGGTCATG
AGAAATCTTGTTTATGTCCTTTCAGCAAATCTTGTTATTGCTACAAGTCG
TGCTGTTGGTGTATTTTCCCTTATAATAGTCTACTTGTCAAGACAGAAGG
GTCTGGAATAAATATCGTTTACTCATATGGCCTGGTTGTTACGCGGGAAG
GGTCCTGTTGCTTCAAACACGCTGAGAAGGCATGAACGTCGTTTGGCAAA
AGAGACTTGAATAGAATCTTGGatataattttttctagccaGCGAACGTG
ACTGTCATGAGGTCATCTTTTTATTGTGTTATTCTTAAGTTTGATGTATT
TTCATGTGTGGAAAAAAATAATCTCAGTTGACGAGGGATGTACATTTTGC
CAAAAAGATTCATGTCATGAAAGATATTGTTTGTCGCTTGAAGTCTTCTT
AGAGAGAAATTGTTATTGTTGAACACCTCACTCTACAAAGCCTCTTGTTT
GTCACCTCTTGCACTGGTCTGTGGGACAAAGTCCTtctcaaccaatcaga
attgAGCATTTGACTTCTCTCATCAAATGAGTTGTTCCACTTGATACAAT
TTCTCAAATGACGTCATCTCCGCTTCTCTCAGCGCTACTTATTATATAGA
TGGCAGGACGAGCTTTTTGTTCATAAAATCATATTAAATTTGATATCACT
TTGATAAGCTTATAGACGAGCCAGGAGCTGTTTTATGTCATTTCTTTTCT
TTGCTTCAAATAATAAGGTAAATGATATGTTCTCGGTGGTCAAGTCATGA
GAATTTCTCGGTTTGGATGATGAGTTTTGTAAGTTGCGTAAAGGTGTCGT
AACTGATAGTAAAAGTTCAAGCCAAAAAAGGGTTTTTACCTTTGAGGAAA
ACGAGTTGAACAAGTTTGTGCTTTTATGATAATTAGTTATGATAAGCATG
GCGTAACTGCTtgatattgttttgttttgagaacGTCAACTTTTGCATTG
ATGTCATTTAAATAGTGCATTGTATAACGACCACTAATTATTTTCCTCTA
TCGCCTTGTGTTTATAACTTTCACTGTTTGTTTTTATAGGAGTTTATCCA
GCAGCCGTTGATTCAATCACTCTACAACACGAACTTGAAGAAGAAgatta
taaaaagaagaaaagacttTTCATTCCTTGGAGCAAACGAGCTTCTTTCA
TAGCAGCTACTTATATAGAGAATCCTGAAACACTCACTCAACCACCTGTA
GTTACGACTTTCCAACGTCGAAAACAAGGACGTTTCGCATCTTTTCGTCG
TACACGATCAACAATCACAACTGAAACGACCACACAAAGTGTTTCTTCGA
CCAGAAAGTTCAATTTACGGCGCATGAATAGTTTAGATCGTAATACGATA
CGATCGTTTCGAAGCAGCGCGTCCACTTTACGGAGACAAAACAGTGAGAA
TAACGCTACTTGGAAAAAGAAGAGAATGAGCTCGGTTTCTTCGCTACAAA
AACAACAGAGCTTTGATGCTGGCTCCTTAAACCATCGGGATGCACGAGCT
CTTAAACAACGAAAAAGTAATCGCTATAAAGTGGACGGTGCTCAAAGTTT
CTTTGATAGATACCAAGATACTTTACGAGTTGATATGTTCTCCGTTGACT
TGAATAAACTGACGATAAAAAGCAATAAAAGNGGACGAGCTTTTTGTTCA
TAAAATCATATTAAATTTGATATCACTTTGATAAGCTTATAGACGAGCCA
GGAGCTGTTTTATGTCATTTCTTTTCTTTGCTTCAAATAATAAGGTAAAT
GATATGTTCTCGGTGGTCAAGTCATGAGAATTTCTCGGTTTGGATGATGA
GTTTTGTAAGTTGCGTAAAGGTGTCGTAACTGATAGTAAAAGTTCAAGCC
AAAAAAGGGTTTTTACCTTTGAGGAAAACGAGTTGAACAAGTTTGTGCTT
TTATGATAATTAGTTATGATAAGCATGGCGTAACTGCTtgatattgtttt
gttttgagaacGTCAACTTTTGCATTGATGTCATTTAAATAGTGCATTGT
ATAACGACCACTAATTATTTTCCTCTATCGCCTTGTGTTTATAACTTTCA
CTGTTTGTTTTTATAGGAGTTTATCCAGCAGCCGTTGATTCAATCACTCT
ACAACACGAACTTGAAGAAGAAgattataaaaagaagaaaagacttTTCA
TTCCTTGGAGCAAACGAGCTTCTTTCATAGCAGCTACTTATATAGAGAAT
CCTGAAACACTCACTCAACCACCTGTAGTTACGACTTTCCAACGTCGAAA
ACAAGGACGTTTCGCATCTTTTCGTCGTACACGATCAACAATCACAACTG
AAACGACCACACAAAGTGTTTCTTCGACCAGAAAGTTCAATTTACGGCGC
ATGAATAGTTTAGATCGTAATACGATACGATCGTTTCGAAGCAGCGCGTC
CACTTTACGGAGACAAAACAGTGAGAATAACGCTACTTGGAAAAAGAAGA
GAATGAGCTCGGTTTCTTCGCTACAAAAACAACAGAGCTTTGATGCTGGC
TCCTTAAACCATCGGGATGCACGAGCTCTTAAACAACGAAAAAGTAATCG
CTATAAAGTGGACGGTGCTCAAAGTTTCTTTGATAGATACCAAGATACTT
TACGAGTTGATATGTTCTCCGTTGACTTGAATAAACTGACGATAAAAAGC
AATAAAAGTGACGGTTCATCGACCACAAAATCCGTCACCCCTACGACCCC
TCTCACACCGAACTCTACCGACGATAAAGACTCGGTTTTCGATTACAGCG
ACGAACATTTATCGAAAGAATTTGATTACAAACTTGTCGGTAAAACGTAC
CAACAACTATTTTACATTCGTTCAAGGCTTTCAGCGAGTGCGCGTAAAAG
TGAATTTATGTGTGATGGTTCGTTTGGATGTTCTGCTTGTGATCTGCAAT
GTTACCCTGAATGGACGAATTCGTAAAAACTTGAACAAGAGAAAGTGGTA
GAATGAGATAATGTTATGACTTGTGGATCGCCTTTGGTGAGATAAAACGG
TGGCCTGATccaaaaactgtttttctttacgGCAAGTGACTATACTTGAA
ACTAATGAGCGTGAGAAACGAAAGTACAATCCAGTCTATAAGATCTTGTT
TGTTTAGAAGGTTACCAAGGGGTCAATGAACGTTCTcagtgaaaatgttt
ttgatctCTCTACTTGATCCTAAATGAGGAAGGAAATCAATTTATGGAAT
TAAAGAGAAAAGTTGAACATAAATTTCTGATGGACTGTCAAGGAAGTCAT
TTTCTGTCAGCCATGTAAGTTGTCACAATGAATGTACGAGTTTTGCTGTG
AATCTTTATTTTGAGATGTTTCGATCTCAACTGTCAAGTTACCATCAATA
TGAACCTTTGCTAACTAATTCATAAAAGAATTCGCCATTTTAGAAGGATT
TCGATTTTTGTCCGAAATATTATTTATATCGTCCAATGTCTAACAATAtt
tgtaaatatatttttcgCAGCAATATTTTTCCTTTGTAGTTATTTTCTAT
TGTACATAAATacggaaaataaattttgaaaatttgacaaactaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007857-exon-sc0000080-1491911889:632852..633088 | TCONS_00007857-exon-sc0000080-1491911889:632852..633088 | Clytia hemisphaerica | exon |
| TCONS_00007857-exon-sc0000080-1510915933:632852..633088 | TCONS_00007857-exon-sc0000080-1510915933:632852..633088 | Clytia hemisphaerica | exon |
| TCONS_00007857-exon-sc0000080-1575043694:632852..633088 | TCONS_00007857-exon-sc0000080-1575043694:632852..633088 | Clytia hemisphaerica | exon |
| TCONS_00007857-exon-sc0000080-1491911889:638718..640196 | TCONS_00007857-exon-sc0000080-1491911889:638718..640196 | Clytia hemisphaerica | exon |
| TCONS_00007857-exon-sc0000080-1510915933:638718..640196 | TCONS_00007857-exon-sc0000080-1510915933:638718..640196 | Clytia hemisphaerica | exon |
| TCONS_00007857-exon-sc0000080-1575043694:638718..640196 | TCONS_00007857-exon-sc0000080-1575043694:638718..640196 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| sc0000080 | supercontig | sc0000080:632852..640196 + |
Blast
The following BLAST results are available for this feature:
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