TCONS_00007848 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00007848
Unique Name	TCONS_00007848
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1294

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000080:615050..619996+

transcript sequence

>TCONS_00007848 ID=TCONS_00007848|Name=TCONS_00007848|organism=Clytia hemisphaerica|type=transcript|length=1294bp
TTTAGCATgaaataatcttttaaaaatgaTATCCAGTACTTTTTTGAGAA
GAAATCTGAGTTTAACAAGACCAAGGTTTATGCACCAATCTGCTGCTTGT
CtatcaaatgaaaaaattagaATTGGATGTGCATCTGGCTTTTGGGGAGA
TACATCAGTTGCAGcCCCGCAACTTGTTCAACATGGAAATATTGATTACT
TGGTGTTTGATTATCTCTCAGAAATCACAATGTCCTTACTGGCTaggatg
aaagaaaaaaatccaGCTTTTGGTTTTGCTCCAGATTTTGTGAGGTTTGC
CATGGCACCTTTGATTCCTGCTAtcaaaaagaaagGAATCAAGGTCATCA
GTAATGCTGGTGGTATTAACCCAATAGCTTGCGGTAAAGCATTGGAGAAA
GTATGCGAGAAACATGGTGTCAAGATGAATATTGCTGTTGTCACTGGAGA
TGATATCTTAGACAAGAGAGAAGAACTGGGTGATACTCTACCACAGAATA
TACACAGCATGAATGCATATTTAGGTTGTGGTCCTATAGCAAGAGCTCTT
GATCTTGGTGCAGATATTGTTATCACAGGACGCTGTGTGGATAGTGCTGT
TACTCTGGCACCTCTTATCCATGAGTACAATTGGAACATGAATGACTACA
ACCTGATGGCTGCTGGAAGTTTGGCTGGACACATAATTGAGTGTGGAGCA
CAAGGTAGTGGTGGTATTTTCACAGACTGGGAACTAGTCCAACGTTGgga
GAATATTGGATTTCCGATAATAGAATGTGAACGTGACGGCTCGTTCATTG
TCACGAAACCTCCAAAAACTGGGGGATTGATCACCAAATCAGTCATTGCA
GAACAGATTTGCTATGAAATTGACGACCCAGATTGTTACAAGCTACCTGA
TGTCAATTGCAGTTTTTCGAATGTCAAATTGGAACAAATAACAGTTGGCG
ATGAACCACAAGTTCGGGTTACTGATGTTACGGGACGCGTGCCATCTGAT
ACGTATAAAGTGAGTGCCACATATCTTGATGGTTACAGAGCAACTGCTGT
TTCGCCTGTGGTTGGTCCTCATGCTGCTGCAAAAGGAAAGCGTGTTGCTG
AAAGCATTATTCTTAGGTGCCAGAACCTTTTCAAAGCAGTTGGGTTGAAA
GATTTTAGGAAAGTCAACATTGAGATGCTGGGAAGTGAAGATAACTATGG
ACGAAATAAAAACAATACGGCTTCACCATCACGAGAAGTTGTTTCGTGGA
TAGCCGTTGAACATGAACAAAAAGAAGCTTTAGAAATCTTTGCA

Run BLAST on NCBI

transcript from alignment at sc0000080:615050..619996+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00007848 ID=TCONS_00007848|Name=TCONS_00007848|organism=Clytia hemisphaerica|type=transcript|length=4947bp|location=Sequence derived from alignment at sc0000080:615050..619996+ (Clytia hemisphaerica)
TTTAGCATgaaataatcttttaaaaatgaTATCCAGTACTTTTTTGAGAA
GAAATCTGAGTTTAACAAGACCAAGGTTTATGCACCAATCTGCTGCTTGT
CtatcaaatgaaaaaattagaATTGGATGTGCATCTGGCTTTTGGGGAGA
TACATCAGTTGCAGGTTAGATCTTGGTTATGAATGAAGCTGATGTTTTTT
TACCTCAGCTAAAATTCTTTCAGAGAAATTTCTTTTATCCTCTTTTTCCT
CTTTTCTAACTAAAATAAAGCACTCATAATGTCAGTTTCAATAAATGAAA
CTCAAGTATTGAGTTAATGTTTAGTGTTCTGATTTGTGTTTGATGCTCCA
ATGTTACCACGTCTTCCCAAAGCTCCTAAAAGATACAAAGGAATGAATGC
CACTAACAGTGACATAGCTAGAGCAAAGCGATTCCTATGATCTCAAGatc
aaataaaagtaaataaaaatctTTGAAGACAAACAATCTTCTTTGAGAAA
TTAGGGAAAAATTGCTTTATgtcataattgatgacgtcataaaacttaaa
atttcaaTATCTCAAAAACTGGGTCCACACCCtatgttttttttcaataa
atttatcATTTTCGTTTTACAAGAAATCATGATGCCTTAATAATAAGCGG
AAAAACATTCTGTCTTAATGATTAACAAAACTTATTTCAATTTAAATACT
TgaatattctttttatttttctagcCCCGCAACTTGTTCAACATGGAAAT
ATTGATTACTTGGTGTTTGATTATCTCTCAGAAATCACAATGTCCTTACT
GGCTaggatgaaagaaaaaaatccagtaggtattttaaatgataaaataa
agTCAATGAAATCAaaggaaggaaattttttaaatcactTGACTTGTTTT
TTAGGCTTTTGGTTTTGCTCCAGATTTTGTGAGGTTTGCCATGGCACCTT
TGATTCCTGCTAtcaaaaagaaaggttttaaaactttgtttttcacCTTT
TTAGTCCAATTACAAGGATCTAATTAGCGTATTGCATTTCGCAATTTACA
ATGGGTTTATTGATTACTTACAAgctataaaattgaaaattaatccATTT
CAGGATGCAAAAaccatttttgccaaaaaaagtgCGATGCACTTTCCAAC
CCTTATTTCGATGCATGAATTACAGTTCTGAAGAGTTTATTCTAATTGTC
AAGATATAAGTTATTTCAATATCATCAAGattttctattgtcttaaatGT
ATTTTCCTAATGTTATTTTTTCTGAGTTGACCAAATTGTACTTATCCATA
CTACTCTTGGGTATATGGGAGTGGAATAAGTAGGATTggtgaaaaaatct
gaaaactaAGTAAGTGGAGGTATGGGCTTGGAATGAAAAACGTGTTGTGT
GGAAATAGAGGCCATTGCAGAAGATTCGaggcaaaagaaaaaactttgaa
aaatattttaattgataAGGTGGAATTGTTTTCTTCTATTAACAGGAATC
AAGGTCATCAGTAATGCTGGTGGTATTAACCCAATAGCTTGCGGTAAAGC
ATTGGAGAAAGTATGCGAGAAACATGGTGTCAAGATGAATATTGCTGTTG
TCACTGGAGATGATATCTTAGACAAGGTTTTGGAATATATACTTTTTTAA
TTTAAGAAATTAGCAATCCTACCCCAAATCTGTTTCTCAAAGGCTAGACC
ATGACCTCATAGAtttcttatgaaaattttaaaagaaaggaaaatctttt
taaaagtaTGAACAAATTTATTTGTGGTTTTAGAGAGAAGAACTGGGTGA
TACTCTACCACAGAATATACACAGCATGAATGCATATTTAGGGtatgatg
ttttatttttatgtatgaaaaattgaattgtcAAGAACTGTCACTTCAAT
GATAAAAggaattttgatctttttaaacTGATTTTTAAACTTCTgttttc
ttgaatttaaaacatttgCCTTTCAGTTGTGGTCCTATAGCAAGAGCTCT
TGATCTTGGTGCAGATATTGTTATCACAGGACGCTGTGTGGATAGTGCTG
TTACTCTGGCACCTCTTATCCATGAGGTATGCAATCTGAGAAATTTGTAT
GTCTCCTTTGTTGTGTAAAGTTCATCTTCCATCTGAAGCAAACTGCaagt
aaaataaaagttttttgttgaatGAAACTCAAATTGAATCTTAGCTTACC
TAAATGATTTAGGAACCATTTGGTTATTTAGTTTTTTAGTACCTTTTGAT
GATTCATACCAAAAGGGGAAACACTCTTGCCCTCTAAACCACCTAAGATG
GTGTGGTAACCCTTTGAGGGAAGATCTCAACTACAGAAGGGACATTTTTT
CATTTGAGGTGGTATTTTTCAACATATAATTTATATACTATTTGTTCTTC
AGTACAATTGGAACATGAATGACTACAACCTGATGGCTGCTGGAAGGTAA
TTAGAAATAAGGAAAACTTTGACTAAACTTTGCTTAATTGTTTACAGTGT
GGGAAGGGTCATGTGAATCTCCGAGCAATTTCGAGTACATATAAATTCTT
CCAAAATCTATTAGCATATTGCTAGCAACACTCTTGTTGAGTCTTGCAAT
CTATCAATTAAAGCCAGCAATAAGCTGGCAATAAGTGTTTGTGTgaattc
tatttttagaaaaatatttgacctAAGGTTAGACTGTTGCCAGCAAGAAT
TTCATGTTCTTTGAATCGCTTGTATGGTCACACACATCCCCCTTCTTGGC
ACCCGTCACCCTATACTTTTAagaatgttgttgttttttacacttttcta
CCATGGAGTATTTTGATAATGATTTTGGCTAATTTTACCTTTGAAGACAT
ACTAAAAGTACAACAGAAAATATGCACTTCTActaaaaagagaataaaaa
aatcttccttTTTTAGTTTGGCTGGACACATAATTGAGTGTGGAGCACAA
GGTAGTGGTGGTATTTTCACAGACTGGGAACTAGTCCAACGTTGGTAAGA
ATAATTAACCACGAACTTCTCTATCAGTTAGATTTCAATTTCCAATCTGT
ATATCAGGTCAAAAAATACAGCAATGCATCTTAAAAACTGATTGTCTCTA
AGtctccattttgtttttttatttcagggaGAATATTGGATTTCCGATAA
TAGAATGTGAACGTGACGGCTCGTTCATTGTCACGAAACCTCCAAAAACT
GGGGGATTGATCACCAAATCAGTCATTGCAGAACAGGTATCGAGATTTAA
TTGctgttattcatgatatgcatcactgcaatgaattcacgaaattatgc
aacttttctgtttttgttccacccaatacgtcactttttcaattgtttaa
gtgacgtattgggtggaaaatcttaaaagttctcagaagactctccagtg
gtgcatatcctggcatatcatgaattaataaATAATTTATAAGGACGTTA
AATTTGGTTTTGGGAATGGATACCTATTGATAAGATCATTTAACTTTCCT
AGCATAACACGAATTAATGGTTCAACAAAATGTTTTATCAGGACCAGGGG
TTCTTCTTTGCAACGACCTTGATTTAGAgtatattttatcaaatattttt
ataaccCCTTTCTTGATAGCGGAAAGAATATTGTATCTATATTTCCATTC
TAGATTTGCTATGAAATTGACGACCCAGATTGTTACAAGCTACCTGATGT
CAATTGCAGTTTTTCGAATGTCAAATTGGAACAAATAACAGTTGGCGATG
AACCACAAGTTCGGGTTACTGATGTTACGGGACGCGTGCCATCTGATACG
TATAAAGTATAATATTTTGATACTCTATGTATGGTCACTGATCTATTCTT
CACCTTGCATTATTCACTAGCACTGAAAGGTTTATTTGTTGCTCCAGTAT
ACGATTTGTAGTTGTTCCATCAAACAATTAGCAagagtttttttcacttt
ttgaaaatccttttgcTAGGTGAGTGCCACATATCTTGATGGTTACAGAG
CAACTGCTGTTTCGCCTGTGGTTGGTCCTCATGCTGCTGCAAAAGGAAAG
CGTGTTGCTGAAAGCATTATTCTTAGGTAGGATATACTAGTAAGGTTTGT
TGTActgaaatattattattattatatataataTTATTATGTATCCCTAT
AGCCAAACGAATAAAAGAAAGTATCGCTTCAGATCGCTTTTAGAACAgaa
gaaattttgtcaattATTAAAGGTGGCGAAGGTGGGTGGCTCTTAAAAAG
AAcaagattattttcaaaatttcaaggatgGATGTTTGTCCAAAAAGCTC
GCATGTACCTTAAATGGATTAACTTTCGTGTGGATTAATCTTtttgcgat
tttcgcgaatttcggccATCTGAAAGAAATTGGTCGAAAAAAAGGCCAAT
TCACGAAATTTTTGGATTCTCATCAGTTCACGAAAAAAGTCCGCTGTAAA
TTAACCCATTTAAGGTATTGATATGAATGTGATTTTATTTTACTCCAGGT
GCCAGAACCTTTTCAAAGCAGTTGGGTTGAAAGATTTTAGGAAAGTCAAC
ATTGAGGTGAAAATAATGTttatgttaaaactttttatgatgcATACTTG
TCCATACAGCCTTTCTAAAAGAGGAAACTGTCATCATCTACTTTGTGAAT
TAAAGTCTACCAATGATAATAGAACTAGACCCAACTCAACTCATGTTTGT
ATTTTTGTTGTTATTTATTTTCAGATGCTGGGAAGTGAAGATAACTATGG
ACGAAATAAAAACAATACGGTAAATTTGCCAATACTCTTGATTTTTGTGG
TTctaattgtaaaattttaagccttttgaagtattcattttcaccaactt
gaCTTTCTCGTTCGATATACAGGCTTCACCATCACGAGAAGTTGTTTCGT
GGATAGCCGTTGAACATGAACAAAAAGAAGCTTTAGAAATCTTTGCA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_004451	XLOC_004451	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000080	supercontig	sc0000080:615050..619996 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.14738	6.06726	5.42845	3.15035	9.90426	8.98576	7.73169	10.1657	14.0434	16.062	11.9111	9.40425	5.07955	3.00067	8.24046	6.81536	1.79557	2.98119	4.27685	2.72779	1.32232	4.18406	0.37298	5.06728	0	0.00121802	2.84281e-08	3.5287	8.28143	0.267757

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00007848 vs. Swiss-Prot (Human)

BLAST of TCONS_00007848 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00007848 (transcript) - C. hemisphaerica