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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007842 ID=TCONS_00007842|Name=TCONS_00007842|organism=Clytia hemisphaerica|type=transcript|length=518bp
CCAAACTCACCTCCCACGACACCAAACTCAAAACTCTTGGTAAAAGCTTC
GACGCCCATGACACCAAACTCACCGCCCTTGGTACCAATTTTGACGCACA
TGACACCAAACTCACCAACCATGACTCCAAACTATCCGCCCTTGGTACCA
GCTTTGAGGACCATGACTCGAAATTAGCCGCCCACGACACGGAAATGGAG
TCAATGGCGAAAACACTTGCGGAACAAGTGGCACGTCTAGAGAAAGAGCT
CAATTTCATAAGAAGTGGCTCCGTTCAAAGCAATGGGAGCCAGCGTTATG
AATCAAGGGGTTGTTGTTTGGATGACGTCATCCAATACATTTCTTCTGAA
ATCGGCCCACAAAAACCTCAACTTCTCTCCAGACTTGAAATAGATCAAAG
CGAAGAGGAAACCCCACTATCAGAAATTCTAAAAGATATACCCTGGCATC
ACATCAGTTTGCATTTGGAGAGATTGGGACGATCTGACATAGTGGATTAT
CTGACCAAGAATACTCTT Run BLAST on NCBI protein sequence of TCONS_00007842-protein >TCONS_00007842-protein ID=TCONS_00007842-protein|Name=TCONS_00007842-protein|organism=Clytia hemisphaerica|type=polypeptide|length=172bp
KLTSHDTKLKTLGKSFDAHDTKLTALGTNFDAHDTKLTNHDSKLSALGTS
FEDHDSKLAAHDTEMESMAKTLAEQVARLEKELNFIRSGSVQSNGSQRYE
SRGCCLDDVIQYISSEIGPQKPQLLSRLEIDQSEEETPLSEILKDIPWHH
ISLHLERLGRSDIVDYLTKNTL Run BLAST on NCBI transcript from alignment at sc0000080:492201..493078+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007842 ID=TCONS_00007842|Name=TCONS_00007842|organism=Clytia hemisphaerica|type=transcript|length=878bp|location=Sequence derived from alignment at sc0000080:492201..493078+ (Clytia hemisphaerica)
CCAAACTCACCTCCCACGACACCAAACTCAAAACTCTTGGTAAAAGCTTC
GACGCCCATGACACCAAACTCACCGCCCTTGGTACCAATTTTGACGCACA
TGACACCAAACTCACCAACCATGACTCCAAACTATCCGCCCTTGGTACCA
GCTTTGAGGACCATGACTCGAAATTAGCCGCCCACGACACGGAAATGGAG
TCAATGGCGAAAACACTTGCGGAACAAGTGGCACGTCTAGAGAAAGAGCT
CAATTTCATAAGAAGTGGCTCCGTTCAAAGCAATGGGAGCCAGCGTTATG
GTAAGCCTGACACTtcatttcttaattttcttaatttagtttttttactG
ATAAATAATTCAACGATTATAAATCAGCTATAATTTAAATTCTGATTTCT
TAAGGATATGTAGTAGTTAAGGAAAACAAAATGTCCATCGCCCTGAACAA
TTTCGAAAACGAGGCAAGCAGTCATTTCAAGCATTTCTACTACCACAGTG
GCATTTGTTCATTTAAAACacttaacaaaagaaaacaaaaatatattttc
tttgcaGTTGCTCGATAGTCAAGTGGTCCTCACCTGATTTCAACTGCTCC
TGTTTATTGGTCGAGCCTAAAAGAGTCATTCTTTAAAAGTTATTCTTTCC
TTCATTTTAGAATCAAGGGGTTGTTGTTTGGATGACGTCATCCAATACAT
TTCTTCTGAAATCGGCCCACAAAAACCTCAACTTCTCTCCAGACTTGAAA
TAGATCAAAGCGAAGAGGAAACCCCACTATCAGAAATTCTAAAAGATATA
CCCTGGCATCACATCAGTTTGCATTTGGAGAGATTGGGACGATCTGACAT
AGTGGATTATCTGACCAAGAATACTCTT Coding sequence (CDS) from alignment at sc0000080:492201..493078+ >TCONS_00007842 ID=TCONS_00007842|Name=TCONS_00007842|organism=Clytia hemisphaerica|type=CDS|length=1032bp|location=Sequence derived from alignment at sc0000080:492201..493078+ (Clytia hemisphaerica)
AAACTCACCTCCCACGACACCAAACTCAAAACTCTTGGTAAAAGCTTCGA
CGCCCATGACACCAAACTCACCGCCCTTGGTACCAATTTTGACGCACATG
ACACCAAACTCACCAACCATGACTCCAAACTATCCGCCCTTGGTACCAGC
TTTGAGGACCATGACTCGAAATTAGCCGCCCACGACACGGAAATGGAGTC
AATGGCGAAAACACTTGCGGAACAAGTGGCACGTCTAGAGAAAGAGCTCA
ATTTCATAAGAAGTGGCTCCGTTCAAAGCAATGGGAGCCAGCGTTATGAA
TCAAGGGGTTGTTGTTTGGATGACGTCATCCAATACATTTCTTCTGAAAT
CGGCCCACAAAAACCTCAACTTCTCTCCAGACTTGAAATAGATCAAAGCG
AAGAGGAAACCCCACTATCAGAAATTCTAAAAGATATACCCTGGCATCAC
ATCAGTTTGCATTTGGAGAGATTGGGACGATCTGACATAGTGGATTATCT
GACCAAGAATACTCTTAAACTCACCTCCCACGACACCAAACTCAAAACTC
TTGGTAAAAGCTTCGACGCCCATGACACCAAACTCACCGCCCTTGGTACC
AATTTTGACGCACATGACACCAAACTCACCAACCATGACTCCAAACTATC
CGCCCTTGGTACCAGCTTTGAGGACCATGACTCGAAATTAGCCGCCCACG
ACACGGAAATGGAGTCAATGGCGAAAACACTTGCGGAACAAGTGGCACGT
CTAGAGAAAGAGCTCAATTTCATAAGAAGTGGCTCCGTTCAAAGCAATGG
GAGCCAGCGTTATGAATCAAGGGGTTGTTGTTTGGATGACGTCATCCAAT
ACATTTCTTCTGAAATCGGCCCACAAAAACCTCAACTTCTCTCCAGACTT
GAAATAGATCAAAGCGAAGAGGAAACCCCACTATCAGAAATTCTAAAAGA
TATACCCTGGCATCACATCAGTTTGCATTTGGAGAGATTGGGACGATCTG
ACATAGTGGATTATCTGACCAAGAATACTCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007842-exon-sc0000080-1491911889:492201..492500 | TCONS_00007842-exon-sc0000080-1491911889:492201..492500 | Clytia hemisphaerica | exon |
| TCONS_00007842-exon-sc0000080-1510915933:492201..492500 | TCONS_00007842-exon-sc0000080-1510915933:492201..492500 | Clytia hemisphaerica | exon |
| TCONS_00007842-exon-sc0000080-1575043694:492201..492500 | TCONS_00007842-exon-sc0000080-1575043694:492201..492500 | Clytia hemisphaerica | exon |
| TCONS_00007842-exon-sc0000080-1491911889:492861..493078 | TCONS_00007842-exon-sc0000080-1491911889:492861..493078 | Clytia hemisphaerica | exon |
| TCONS_00007842-exon-sc0000080-1510915933:492861..493078 | TCONS_00007842-exon-sc0000080-1510915933:492861..493078 | Clytia hemisphaerica | exon |
| TCONS_00007842-exon-sc0000080-1575043694:492861..493078 | TCONS_00007842-exon-sc0000080-1575043694:492861..493078 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000080 | supercontig | sc0000080:492201..493078 + |
Blast
The following BLAST results are available for this feature:
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