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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007827 ID=TCONS_00007827|Name=TCONS_00007827|organism=Clytia hemisphaerica|type=transcript|length=2948bp
CACGTcatgaatgttttcaaatgaaAGTACTTATGGTAACATATCTTATC
ATCATTCTCACATTTTCATCAAATGTTATGTTAGATAATAATAATGTTCG
GGTTCTGTACGTCAACTATCTGCTTGTATGAGATAGATTCAATGGATTTA
CTTCGAGAAAGATGAAAATATCGTATTTGTTTCATATACTACTGATTTTG
TTTTTTGCTGTTTGCAACCATGATTGCCACCCGCAATGTCTCGATTATCT
GCCACCGTTTGAACCATCGAGTCCATTACAATTTTGTGTGAATTATCGAG
ATTATGGTTGTTGTGATAATCGTCTCGAAGAGCGAATTAAGTGGGATTAT
GAATACATGGCGAGAGATATGAACTCGAATGTATCCTTGAAAATACTAAA
GGATATACTCTGTTTACAATGCCATCCGTACGCAGCGCATGTCTTTGATG
CTGAAAGCGGAACAGACCGACATTCAACATTCCAGAAAAGTCATATGCGT
TTCCCGGGTCTTTGTAGGGATTATTGTTACAAACTTTTTGAGGAGCAAAG
GGATGTACTACTAAAACTGGCAATCAATAAGGATTTTGTTCAGTTCATAA
ACTCTACTAACGCAACAGAATTCTGTGATTGGGCTCAAATCGGTGACTTG
AACTATTGCTACCCTGATCTGGATAACACTACAGCCTCCAAAGAGTCAGT
TCAGATCTATCACAAAGATCAACTTTGCGTGGAGCCAATTTCAGGACCAC
ATTTTGCCAATGCGCTAGTAGCTGTTCACTCAAATGATCAATCACATCGT
TTATTCGTAGGAGAACAGCGTGGTCTTGTATTTGTTATTTTACCGAACGG
AACAAAGATTGAGAAACCTTTTTTGAACATCACGGATAAAATAGTAAATT
CTGGAGTACCGTGGGATGAACGTGGCTTCTTGGGCTTAGTTTTCCACCCT
GAATATAAAACAAATGGCAGGTTCTTTGTTTACTATTCAGCACCAGCGCA
AGGGCTGAACCGTGATGAATTCAGtCACTCAAAGTGGTATTGGGGAACGA
AGCATCGAATACGAATCAGTGAATACACCGTTCATCCTGATCATCCAAAT
ATGGCTGACCACAGCTCAGAGCTACCATTATTAGAAATCGACCAACCCGA
ACCTAACCATAATGGCGGTATGCTGTTATTCGGAACTGATGGATATTTAT
ATGTTTTCGTGGGAGATGGCGGGGGTAGTGGTGACCAGCACGGTATCCAT
GGCAACGGTCTGTTAATGTCAACCATGTTGGGGAAAATCTTGAGAATAGA
CGTTAATGTAGAGCACAAGAAATACGGCATTCCCAAAGATAACCCGTTTG
TCAATTTTCGCAATGTGAAGGATGAGATTTATGCTCTTGGGATTCGAAAC
ACGTGGCGATGTTCGGTTGATTTGAAAGGGAATGGTAGAATGTTTTGTGG
AGATGTCGGACAGAATCGCTTCGAAGAAATTAACATCATTAAGAAAGGAC
GAAACTACGGTTGGAGAGCTTATGAAGGTTTCTCTTGCTTCGATAAAGAT
CTTTGCCGAAGGGAGTTAAAAAACCTAGAATTTCCCATCATCGCATATCC
GCATTCAGTAGGACGTTCAATTGTTGGAGGATATGTTTATCGGGGATGTC
AAAATCCGAATATGTACGGAAAATACTTCTTCGCTGATACAATGAACGGA
AAGATATTCTCTGCTGAGGAGAATCCGGGGACTGGAAAGTGGGATTATCG
GGAAATCAAAATCGGAGATGAGAAATTTTGTAATAACGGTTTTTCCAGTG
TTTATCATAAGGCAATCTTATCTTTTGGTGAATCTGAATCGGGCGAAATT
TATCTTCTTAGTACACCGAATCCTCATCCTGATTTTGAAGGATCGGTTTT
GTTTCGGCTCGTTGACCCATTGCGTCGTAATGATCCAAAGCAATGTGTCA
CTCGTGTCATCGAGGCAAAACCAATAAAAACGATCAAAAGACGTgctatt
ttcgaaaaataccaaaaagagAAAGACAAAGTGATGAAATCAGGGGAAGG
AGATGGGAAAGCAAAATGTCGTGACTCGGGCAGCTTTTGTAAACATTACA
GACCGACTAAAAGGAGAAAGAAGCCGTTATTAAGTTGTTTGAAAACTAAA
CATTTAAGCAAACGATACTGTCCTGTGACATGCAATTTTTGTCCAAAGTA
AGAAAACGACGAAATAccttcttttttataattttcagaaGATGAATTTG
TAGTTTGTAGAGAATGTAATTAGGGTTAAAAGCGTTGTCTAGGTTTTACC
GTAACATTGGGATATAGTATTTGGTCACCTTTACTTACTCCACTATCAAA
AGATATTCTAATATATATAACTCTTATAATCTTTTCCAAACATTTGCAAT
TTTGCAGcagttgaaaattgaatttttaaaccGTCTCCAATTTAGATCTC
Ggatgtaccttatcggggaaaacttcgtcggggaaaattttcgtcgggga
aaaattcgtcacttgtccaaaatttcgtcacttttccccaacgaagtttt
ccccgataaggtattgtcCAGTTTCTTGGACAATGAAAAAATGTAGCAGG
GCTTTTTGCTGACGTTTCATGTAAGGGTGAGAAAATTGGAGAAAAGATTT
ACGTAATGattgtaagcaaaaaaatggaaaatggtTAGTAAGGTGACCAA
TACTTTCTTCCAATGACGTAAaagaaacctttaaaaaaaccTTCATATCA
ATGTCCAATATTTTTCATCGTGTAAATTGAAACGCAAAATGTAACtaatt
tgttgtatttttttggaatttcgtttttgacgtttttcaatCAAAGTCTG
ACATCATTAAATAATAACTTCGTTAGAATTTCCCCTGATGCAAAACGGGA
AGGCCCTTTTGTGGAAATTTGCAATTTCAAACTTAAATTAAatttaaa Run BLAST on NCBI transcript from alignment at sc0000080:337339..341185+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007827 ID=TCONS_00007827|Name=TCONS_00007827|organism=Clytia hemisphaerica|type=transcript|length=3847bp|location=Sequence derived from alignment at sc0000080:337339..341185+ (Clytia hemisphaerica)
CACGTcatgaatgttttcaaatgaaAGTACTTATGGTAACATATCTTATC
ATCATTCTCACATTTTCATCAAATGTTATGTTAGATAATAATAATGTTCG
GGTTCTGTACGTCAACTATCTGCTTGTATGAGATAGATTCAATGGATTTA
CTTCGAGAAAGATGAAAATATCGTATTTGTTTCATATACTACTGATTTTG
TTTTTTGCTGTTTGCAACCATGATTGCCACCCGCAATGTCTCGATTATCT
GCCACCGTTTGAACCATCGAGTCCATTACAATTTTGTGTGAATTATCGAG
ATTATGGTTGTTGTGATAATCGTCTCGAAGAGCGAATTAAGTGGGATTAT
GAATACATGGCGAGAGATATGAACTCGAATGTATCCTTGAAAATACTAAA
GGATATACTCTGTTTACAATGCCATCCGTACGCAGCGCATGTCTTTGATG
CTGAAAGCGGAACAGACCGACATTCAACATTCCAGAAAAGTCATATGCGT
TTCCCGGGTCTTTGTAGGGATTATTGTTACAAACTTTTTGAGGAGCAAAG
GGATGTACTACTAAAACTGGCAATCAATAAGGATTTTGTTCAGTTCATAA
ACTCTACTAACGCAACAGAATTCTGTGATTGGGCTCAAATCGGTGACTTG
AACTATTGCTACCCTGATCTGGATAACACTACAGCCTCCAAAGAGTCAGT
TCAGATCTATCACAAAGATCAACTTTGCGTGGAGCCAATTTCAGGACCAC
ATTTTGCCAATGCGCTAGTAGCTGTTCACTCAAATGATCAATCACATCGT
TTATTCGTAGGAGAACAGCGTGGTCTTGTATTTGTTATTTTACCGAACGG
AACAAAGATTGAGAAACCTTTTTTGAACATCACGGATAAAATAGTAAATT
CTGGAGTACCGTGGGATGAACGTGGCTTCTTGGGCTTAGTTTTCCACCCT
GAATATAAAACAAATGGCAGGTTCTTTGTTTACTATTCAGCACCAGCGCA
AGGGCTGAACCGTGATGAATTCAGGTGTGTTTgatcgattgattgattga
ttgattgattgattgattgattgattgattgattgattgattgattgatt
gattgattgattgattgattgattgattgattgattgagttTTGGATCGA
AATGTCTTGGTTTACTGTTGACAACTTTTATCATGTCGTGACCATATTGT
CGGATAAAGCTTACTGTGTTCGGTATAAACAGTGTAGCTTTTTAAAAACC
TCACGGTTGATGAAGCAAACACTTTAAATCAAACATCCAAAGCTCTTACT
CGTGGCCTAACCTTGATTCAAGAcacgtttttaaaattttctaatttcaa
cgtatgttttaaaaacagcgcTTTAGCCCCGGTAGTACCTAGGCCAAAGA
GATATGGGGATGTGCAAACCTTTTTTATGTTGAGAATGTCTGTCAGGTTT
CCGTCAAAACAAGGCCAAAACTGCTTGAACGTTGAGGCAGACTGGACACT
ACttcaggcgtacaaactttcgcgagcagaaactttcgcgattttcgcga
aagtaaatgcatttgaaaattcttaacaaggtgatttgcgaaagtttatg
ctcacgaaaaattctctcaaaagTTAAAAATCTATCCAAAGCCtccaaat
caaaatcaaaattagtaATTGTTGCGTTTTTATGCCTTAAAAGCGTCATT
GAATTCATATAGTGCCAGTTTTAATCAAATCCAAGGAGTAtttacgtcac
ttttaaattgtttttggtgaaaattctcattttgatcatccaattcgcga
aagtttttgctcatggaaaatatctttcctcgaattcgcgaaagtaaatg
ccgtaaatttcgcgaattcacgacctcgcgaaagtttgtacgcctaaagt
aaccaagatctttttttctttagtCACTCAAAGTGGTATTGGGGAACGAA
GCATCGAATACGAATCAGTGAATACACCGTTCATCCTGATCATCCAAATA
TGGCTGACCACAGCTCAGAGCTACCATTATTAGAAATCGACCAACCCGAA
CCTAACCATAATGGCGGTATGCTGTTATTCGGAACTGATGGATATTTATA
TGTTTTCGTGGGAGATGGCGGGGGTAGTGGTGACCAGCACGGTATCCATG
GCAACGGTCTGTTAATGTCAACCATGTTGGGGAAAATCTTGAGAATAGAC
GTTAATGTAGAGCACAAGAAATACGGCATTCCCAAAGATAACCCGTTTGT
CAATTTTCGCAATGTGAAGGATGAGATTTATGCTCTTGGGATTCGAAACA
CGTGGCGATGTTCGGTTGATTTGAAAGGGAATGGTAGAATGTTTTGTGGA
GATGTCGGACAGAATCGCTTCGAAGAAATTAACATCATTAAGAAAGGACG
AAACTACGGTTGGAGAGCTTATGAAGGTTTCTCTTGCTTCGATAAAGATC
TTTGCCGAAGGGAGTTAAAAAACCTAGAATTTCCCATCATCGCATATCCG
CATTCAGTAGGACGTTCAATTGTTGGAGGATATGTTTATCGGGGATGTCA
AAATCCGAATATGTACGGAAAATACTTCTTCGCTGATACAATGAACGGAA
AGATATTCTCTGCTGAGGAGAATCCGGGGACTGGAAAGTGGGATTATCGG
GAAATCAAAATCGGAGATGAGAAATTTTGTAATAACGGTTTTTCCAGTGT
TTATCATAAGGCAATCTTATCTTTTGGTGAATCTGAATCGGGCGAAATTT
ATCTTCTTAGTACACCGAATCCTCATCCTGATTTTGAAGGATCGGTTTTG
TTTCGGCTCGTTGACCCATTGCGTCGTAATGATCCAAAGCAATGTGTCAC
TCGTGTCATCGAGGCAAAACCAATAAAAACGATCAAAAGACGTgctattt
tcgaaaaataccaaaaagagAAAGACAAAGTGATGAAATCAGGGGAAGGA
GATGGGAAAGCAAAATGTCGTGACTCGGGCAGCTTTTGTAAACATTACAG
ACCGACTAAAAGGAGAAAGAAGCCGTTATTAAGTTGTTTGAAAACTAAAC
ATTTAAGCAAACGATACTGTCCTGTGACATGCAATTTTTGTCCAAAGTAA
GAAAACGACGAAATAccttcttttttataattttcagaaGATGAATTTGT
AGTTTGTAGAGAATGTAATTAGGGTTAAAAGCGTTGTCTAGGTTTTACCG
TAACATTGGGATATAGTATTTGGTCACCTTTACTTACTCCACTATCAAAA
GATATTCTAATATATATAACTCTTATAATCTTTTCCAAACATTTGCAATT
TTGCAGcagttgaaaattgaatttttaaaccGTCTCCAATTTAGATCTCG
gatgtaccttatcggggaaaacttcgtcggggaaaattttcgtcggggaa
aaattcgtcacttgtccaaaatttcgtcacttttccccaacgaagttttc
cccgataaggtattgtcCAGTTTCTTGGACAATGAAAAAATGTAGCAGGG
CTTTTTGCTGACGTTTCATGTAAGGGTGAGAAAATTGGAGAAAAGATTTA
CGTAATGattgtaagcaaaaaaatggaaaatggtTAGTAAGGTGACCAAT
ACTTTCTTCCAATGACGTAAaagaaacctttaaaaaaaccTTCATATCAA
TGTCCAATATTTTTCATCGTGTAAATTGAAACGCAAAATGTAACtaattt
gttgtatttttttggaatttcgtttttgacgtttttcaatCAAAGTCTGA
CATCATTAAATAATAACTTCGTTAGAATTTCCCCTGATGCAAAACGGGAA
GGCCCTTTTGTGGAAATTTGCAATTTCAAACTTAAATTAAatttaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007827-exon-sc0000080-1491911889:337339..338362 | TCONS_00007827-exon-sc0000080-1491911889:337339..338362 | Clytia hemisphaerica | exon |
| TCONS_00007827-exon-sc0000080-1510915933:337339..338362 | TCONS_00007827-exon-sc0000080-1510915933:337339..338362 | Clytia hemisphaerica | exon |
| TCONS_00007827-exon-sc0000080-1575043694:337339..338362 | TCONS_00007827-exon-sc0000080-1575043694:337339..338362 | Clytia hemisphaerica | exon |
| TCONS_00007827-exon-sc0000080-1491911889:339262..341185 | TCONS_00007827-exon-sc0000080-1491911889:339262..341185 | Clytia hemisphaerica | exon |
| TCONS_00007827-exon-sc0000080-1510915933:339262..341185 | TCONS_00007827-exon-sc0000080-1510915933:339262..341185 | Clytia hemisphaerica | exon |
| TCONS_00007827-exon-sc0000080-1575043694:339262..341185 | TCONS_00007827-exon-sc0000080-1575043694:339262..341185 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000080 | supercontig | sc0000080:337339..341185 + |
Blast
BLAST of TCONS_00007827 vs. Swiss-Prot (Human)
Match: HIPL1 (HHIP-like protein 1 OS=Homo sapiens GN=HHIPL1 PE=1 SV=2) HSP 1 Score: 473.396 bits (1217), Expect = 5.683e-152 Identity = 262/624 (41.99%), Postives = 366/624 (58.65%), Query Frame = 3
Query: 210 VCNHDCHPQCLDYLPPFEPSSPLQFCVNYRDYGCCDNRLEERIKWDYEYMARDMNSN---VSLKILKDILCLQCHPYAAHVFDAESGTDRHSTFQKSHMRFPGLCRDYCYKLFEEQRDVLLKLAINKDFVQFINSTNATEFCDWAQIGDLNYCYPDL---DNTTASKESVQIYHKD--QLCVEPISGPHFANALVAVHSNDQSHRLFVGEQRGLVFVILPNGTKIEKPFLNITDKIVNSGVPW--DERGFLGLVFHPEYKTNGRFFVYYSAPAQGLNRDEFSHSKWYWGTKHRIRISEYTVHPDHPNMADHSSELPLLEIDQPEPNHNGGMLLFGTDGYLYVFVXXXXXXXXXXXXXXXXLLMSTMLGKILRIDVNVEHK--KYGIPKDNPFVNFRNVKDEIYALGIRNTWRCSVDL------KGNGRMFCGDVGQNRFEEINIIKKGRNYGWRAYEGFSCFDKDLCRRELKNLEFPIIAYPHSVGRSIVGGYVYRGCQNPNMYGKYFFADTMNGKIFSAEENPGTGKWDYREIKIGDEKFCN-NGFSSVYHKAILSFGESESGEIYLLSTPNPHPDFEGSVLFRLVDPLRRNDPKQCVTRVIEAKPIKTIKRRAIFEKYQKEK 2024
V HPQCLD+ PPF P+ PL+ C Y D+GCCD + + + +A +++ +D+LC +C PYAAH++DAE D + + PGLC+DYC ++ + R + L+ +++ N FC + + D +YC+P L N ++ V K QLC+E ++ N + VH+ D +HR FV EQ GLV+ LP+ +++ KPFLNI+ ++ S PW DERGFLG+ FHP ++ N R +VYYS S+W IRISE+ V D N DHSSE +LE+ +P NHNGG LLFG DGYLY+F GDGG +GD G GN S +LGK+LRIDV+ + + YGIP DNPFV + E+YALG+RN WRCS D G GR+FCGDVGQN+FEE++++++G NYGWRA EGF C+D+ LC N PI AYPH+VG+S+ GGYVYRGC+ PN+ G Y F D M+G++ S +ENPGTG+W Y EI +G + C G + Y+ I+SFGE E+GE+Y +ST P V+++++D RR P +C + +P + R + KEK
Sbjct: 14 VLGAAAHPQCLDFRPPFRPTQPLRLCAQYSDFGCCDEGRDAELTRRFWALASRVDAAEWAACAGYARDLLCQECSPYAAHLYDAE---DPFTPLRT----VPGLCQDYCLDMWHKCRGLFRHLSTDQELWAL--EGNLARFCRYLSLDDTDYCFPYLLVNKNLNSNLGHVVADAKGCLQLCLEEVAN-GLRNPVAMVHARDGTHRFFVAEQVGLVWAYLPDRSRLGKPFLNISRVVLTS--PWEGDERGFLGIAFHPSFQHNRRLYVYYSV--------GIRSSEW-------IRISEFRVSEDDENAVDHSSERIILEVKEPASNHNGGQLLFGDDGYLYIFTGDGGMAGDPFGTFGNAQNKSALLGKVLRIDVDRKERGLPYGIPPDNPFVGDPAAQPEVYALGVRNMWRCSFDRGDPSSGTGRGRLFCGDVGQNKFEEVDVVERGGNYGWRAREGFECYDRSLCANTSLNDLLPIFAYPHTVGKSVTGGYVYRGCEYPNLNGLYIFGDFMSGRLMSLQENPGTGQWQYSEICMGHGQTCEFPGLINNYYPYIISFGEDEAGELYFMSTGEPSATAPRGVVYKIIDASRRAPPGKC-----QIQPAQVKIRSRLIPFVPKEK 605
The following BLAST results are available for this feature:
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