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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007822 ID=TCONS_00007822|Name=TCONS_00007822|organism=Clytia hemisphaerica|type=transcript|length=2130bp
ATAATTGTGGCGAGTGCGTGATTTTTGGCTAAGTAAAGAATAATACACTG
CTTATTTATCATGAACAAAAATAAACGATTGGTATCTGTTTATGTTTTAC
CGCCCGGCTCAAAACCGATTGTCCGGGTTGAATGTCCGGAACAGTCGATT
GAAGCACAACGATTGTTTAAATTATGTTGTGATACTATTCAGTTGTATGA
AAGCAGTCGAAGATTTTTCGGATTATTTCGTGGTTTATTACACCCGGTGA
AAAAATACGGAGACAGTGAACTAATTATGTTACCCGTCAAAACATACCCT
ATTTCCATACAGAAATGGTCTTTCGATATCATTCAAGAATGTAGGCTAAT
CAAAACAGATCCAATCGCTATCAGACTGCTTGCTCTACAGTACAAATGTG
ATTTAGAAATGAAACGAAAACATCCAACCAAGGAACAGTTAACAGACTTA
AAATCTTTCGAGGACCCAGAATTCACTTGTTATAAACAGTATTTGGATTG
TGCAAGAAGAATCCTTGATTACACGTGGACAGTCGTTTTGGGAGTGGAAG
TTGTCCAAAAAGTCAAACTGGTGACAAATATTCTGCAGAAAGGAAGCAAA
GTGGATTTGGCGTGCACGCCCAAGAAATTGATCATTATCGGGCAATCATT
TGATCTAGCAATCCCTTGGCGAAAGATTCGACGTTTTGCTGAAATTAACG
AAACAAAAACAATCAGTGTTGAAATTTTACTGGAAAGCAAAAACTTCACT
TGGATCGAGTTCAAGACAATACAAGGAGTTTATCTTCTCCAAGTGCTGGC
TGAATACATTGAGACAATGAACGTTAAGTTACAACCACCGGTTTTCAAGC
AACCTAAATTCGTtcttgatgaagaagaagaaccaAAGAAGAAAATCACA
TTCACCATGCTGAAAGAAGAATTATTCGGTGCCggcaaaaagaagaaaga
agaggaTAAAACATTCTATCAAGATTTCGATGCTATTGATgtggtgacgt
catcagatgaaaacgaaagtgaaagtgaggAGGATGAgatttcaatgacg
tcatcatcgaGAAGAAGCTCCATAACGAGTCAGTTTTCAGCCAAGAAATA
TTTGACGGCTGATGATGGTCAAAAACCAGGACCATCGAATACTCCCGACC
GCGTCTCCAAGAAAACTGAAAGTCTCCAAAGTGCTAAATCAGTAAGAAAT
GAAGGGAGTTTGCTTGCAGTCCAAAATGACAACACTCTGAAAGATACTGA
ATCCACATCAGCAGGTGGAAGTTTTCTTTACATCAACGACGATACAGGAT
CGAAGAATGACAGCCTTCTTGACATCAACGAATCAAACATGAGGATGGGC
TCAGTTATCAGCAATGCATCTAACTCTTCATTCATCTTTCGCTCCTAGAA
AATACTATTCATCAACAAATATCTTGTCAATAAAAATTTGTCAGCAAGTA
AAAGCGATTCTTTCGTCCCTTTTACAGGATCGAAGAATGACAGCCTTCTT
GACATCAAAGAATCAAACATGAGGATGGGCTCAGTTATCAGCAATGCATC
CAACTCTTCATTNAAGTTTTCTTTACATCAACGACGATACAGGATCGAAG
AATGACAGCCTTCTTGACATCAAAGAATCAAACATGAGGATGGGCTCAGT
TATCAGCAATGCATCTAACTCTTCATTCATCTTTCGCTCTTAGAAAATAC
TATTCATCAACAAATATCTTGTCAATAAAAATTTGTCAGCAAGTAAAAGC
GATTCTTTCGTCCCTTTTTGCCGACGAATGTTTTACTGATGAGACAGTGA
GTCAGAGAGTTTCCATTGGCAAATTTCCGGAGCTGCTGTTAAACTAATAA
TACTTATTGAAGGAATactttttttgttgaatttctctttaagagaaaac
ctggttatcaaactagtAGTTGTCTTTCCAAGTGTTTCTCGTTGTAATGA
AATTATTACGCTTTGTTTCAAATAAATGAACTTTCTTCTCAAATTTAGAA
AGAATATGATTACAATATTGAAAACATAACAGATCAAAAATGAAGATATA
ATCGTCTTTATTCGTGATACATTAATTTTACTCCCATCGGTAAACCATGT
TTGTAAATTCCATTCCAACCAGGTACGGAC Run BLAST on NCBI transcript from alignment at sc0000080:288243..290777+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007822 ID=TCONS_00007822|Name=TCONS_00007822|organism=Clytia hemisphaerica|type=transcript|length=2535bp|location=Sequence derived from alignment at sc0000080:288243..290777+ (Clytia hemisphaerica)
ATAATTGTGGCGAGTGCGTGATTTTTGGCTAAGTAAAGAATAATACACTG
CTTATTTATCATGAACAAAAATAAACGATTGGTATCTGTTTATGTTTTAC
CGCCCGGCTCAAAACCGATTGTCCGGGTTGAATGTCCGGAACAGTCGATT
GAAGCACAACGATTGTTTAAATTATGTTGTGATACTATTCAGTTGTATGA
AAGCAGTCGAAGATTTTTCGGATTATTTCGTGGTTTATTACACCCGGTGA
AAAAATACGGAGACAGTGAACTAATTATGTTACCCGTCAAAACATACCCT
ATTTCCATACAGAAATGGTCTTTCGATATCATTCAAGAATGTAGGCTAAT
CAAAACAGATCCAATCGCTATCAGACTGCTTGCTCTACAGTACAAATGTG
ATTTAGAAATGAAACGAAAACATCCAACCAAGGAACAGTTAACAGACTTA
AAATCTTTCGAGGACCCAGAATTCACTTGTTATAAACAGTATTTGGATTG
TGCAAGAAGAATCCTTGATTACACGTGGACAGTCGTTTTGGGAGTGGAAG
TTGTCCAAAAAGTCAAACTGGTGACAAATATTCTGCAGAAAGGAAGCAAA
GTGGATTTGGCGTGCACGCCCAAGAAATTGATCATTATCGGGCGTATGTA
ATCCCTACCTTTCTTGGGGTATATTATAGAGGGGGTCTGATCTGGGAGCA
TGAAGTCAGGGGAGTCGACATTTTTTAATCTTGTGTTTGGGGTATAAATA
ACCTTTTTTTCGAATTGAGATGCTCTTGCTTTGCTTTACTAATTAAGTTG
AAAGtgattgtcaacaacaacaaagtgcTTTTGCTTTACTTTAGAAAGAT
TTTNGAAAAtgattgtcaacaacaacaaagtgcTTTTGCTTTACTTCAGA
AAGATTTTTAGTAGCATAAAATTCGCTGCACTTCAGTTAATTATCACGTT
TAAATTTGGCAAGTCAGTTTGTAATTAAATAGGCTTTTGTGAAGTGgaaa
tttttactttgaattatttttggcGACTTTTTTGCTTTCTTGTTACAGAA
TCATTTGATCTAGCAATCCCTTGGCGAAAGATTCGACGTTTTGCTGAAAT
TAACGAAACAAAAACAATCAGTGTTGAAATTTTACTGGAAAGCAAAAACT
TCACTTGGATCGAGTTCAAGACAATACAAGGAGTTTATCTTCTCCAAGTG
CTGGCTGAATACATTGAGACAATGAACGTTAAGTTACAACCACCGGTTTT
CAAGCAACCTAAATTCGTtcttgatgaagaagaagaaccaAAGAAGAAAA
TCACATTCACCATGCTGAAAGAAGAATTATTCGGTGCCggcaaaaagaag
aaagaagaggaTAAAACATTCTATCAAGATTTCGATGCTATTGATgtggt
gacgtcatcagatgaaaacgaaagtgaaagtgaggAGGATGAgatttcaa
tgacgtcatcatcgaGAAGAAGCTCCATAACGAGTCAGTTTTCAGCCAAG
AAATATTTGACGGCTGATGATGGTCAAAAACCAGGACCATCGAATACTCC
CGACCGCGTCTCCAAGAAAACTGAAAGTCTCCAAAGTGCTAAATCAGTAA
GAAATGAAGGGAGTTTGCTTGCAGTCCAAAATGACAACACTCTGAAAGAT
ACTGAATCCACATCAGCAGGTGGAAGTTTTCTTTACATCAACGACGATAC
AGGATCGAAGAATGACAGCCTTCTTGACATCAACGAATCAAACATGAGGA
TGGGCTCAGTTATCAGCAATGCATCTAACTCTTCATTCATCTTTCGCTCC
TAGAAAATACTATTCATCAACAAATATCTTGTCAATAAAAATTTGTCAGC
AAGTAAAAGCGATTCTTTCGTCCCTTTTACAGGATCGAAGAATGACAGCC
TTCTTGACATCAAAGAATCAAACATGAGGATGGGCTCAGTTATCAGCAAT
GCATCCAACTCTTCATTNAAGTTTTCTTTACATCAACGACGATACAGGAT
CGAAGAATGACAGCCTTCTTGACATCAAAGAATCAAACATGAGGATGGGC
TCAGTTATCAGCAATGCATCTAACTCTTCATTCATCTTTCGCTCTTAGAA
AATACTATTCATCAACAAATATCTTGTCAATAAAAATTTGTCAGCAAGTA
AAAGCGATTCTTTCGTCCCTTTTTGCCGACGAATGTTTTACTGATGAGAC
AGTGAGTCAGAGAGTTTCCATTGGCAAATTTCCGGAGCTGCTGTTAAACT
AATAATACTTATTGAAGGAATactttttttgttgaatttctctttaagag
aaaacctggttatcaaactagtAGTTGTCTTTCCAAGTGTTTCTCGTTGT
AATGAAATTATTACGCTTTGTTTCAAATAAATGAACTTTCTTCTCAAATT
TAGAAAGAATATGATTACAATATTGAAAACATAACAGATCAAAAATGAAG
ATATAATCGTCTTTATTCGTGATACATTAATTTTACTCCCATCGGTAAAC
CATGTTTGTAAATTCCATTCCAACCAGGTACGGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007822-exon-sc0000080-1491911889:288243..288885 | TCONS_00007822-exon-sc0000080-1491911889:288243..288885 | Clytia hemisphaerica | exon |
| TCONS_00007822-exon-sc0000080-1510915933:288243..288885 | TCONS_00007822-exon-sc0000080-1510915933:288243..288885 | Clytia hemisphaerica | exon |
| TCONS_00007822-exon-sc0000080-1575043694:288243..288885 | TCONS_00007822-exon-sc0000080-1575043694:288243..288885 | Clytia hemisphaerica | exon |
| TCONS_00007822-exon-sc0000080-1491911889:289291..290777 | TCONS_00007822-exon-sc0000080-1491911889:289291..290777 | Clytia hemisphaerica | exon |
| TCONS_00007822-exon-sc0000080-1510915933:289291..290777 | TCONS_00007822-exon-sc0000080-1510915933:289291..290777 | Clytia hemisphaerica | exon |
| TCONS_00007822-exon-sc0000080-1575043694:289291..290777 | TCONS_00007822-exon-sc0000080-1575043694:289291..290777 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000080 | supercontig | sc0000080:288243..290777 + |
Blast
The following BLAST results are available for this feature:
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