TCONS_00007822 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007822
Unique NameTCONS_00007822
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2130

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007822 ID=TCONS_00007822|Name=TCONS_00007822|organism=Clytia hemisphaerica|type=transcript|length=2130bp
ATAATTGTGGCGAGTGCGTGATTTTTGGCTAAGTAAAGAATAATACACTG
CTTATTTATCATGAACAAAAATAAACGATTGGTATCTGTTTATGTTTTAC
CGCCCGGCTCAAAACCGATTGTCCGGGTTGAATGTCCGGAACAGTCGATT
GAAGCACAACGATTGTTTAAATTATGTTGTGATACTATTCAGTTGTATGA
AAGCAGTCGAAGATTTTTCGGATTATTTCGTGGTTTATTACACCCGGTGA
AAAAATACGGAGACAGTGAACTAATTATGTTACCCGTCAAAACATACCCT
ATTTCCATACAGAAATGGTCTTTCGATATCATTCAAGAATGTAGGCTAAT
CAAAACAGATCCAATCGCTATCAGACTGCTTGCTCTACAGTACAAATGTG
ATTTAGAAATGAAACGAAAACATCCAACCAAGGAACAGTTAACAGACTTA
AAATCTTTCGAGGACCCAGAATTCACTTGTTATAAACAGTATTTGGATTG
TGCAAGAAGAATCCTTGATTACACGTGGACAGTCGTTTTGGGAGTGGAAG
TTGTCCAAAAAGTCAAACTGGTGACAAATATTCTGCAGAAAGGAAGCAAA
GTGGATTTGGCGTGCACGCCCAAGAAATTGATCATTATCGGGCAATCATT
TGATCTAGCAATCCCTTGGCGAAAGATTCGACGTTTTGCTGAAATTAACG
AAACAAAAACAATCAGTGTTGAAATTTTACTGGAAAGCAAAAACTTCACT
TGGATCGAGTTCAAGACAATACAAGGAGTTTATCTTCTCCAAGTGCTGGC
TGAATACATTGAGACAATGAACGTTAAGTTACAACCACCGGTTTTCAAGC
AACCTAAATTCGTtcttgatgaagaagaagaaccaAAGAAGAAAATCACA
TTCACCATGCTGAAAGAAGAATTATTCGGTGCCggcaaaaagaagaaaga
agaggaTAAAACATTCTATCAAGATTTCGATGCTATTGATgtggtgacgt
catcagatgaaaacgaaagtgaaagtgaggAGGATGAgatttcaatgacg
tcatcatcgaGAAGAAGCTCCATAACGAGTCAGTTTTCAGCCAAGAAATA
TTTGACGGCTGATGATGGTCAAAAACCAGGACCATCGAATACTCCCGACC
GCGTCTCCAAGAAAACTGAAAGTCTCCAAAGTGCTAAATCAGTAAGAAAT
GAAGGGAGTTTGCTTGCAGTCCAAAATGACAACACTCTGAAAGATACTGA
ATCCACATCAGCAGGTGGAAGTTTTCTTTACATCAACGACGATACAGGAT
CGAAGAATGACAGCCTTCTTGACATCAACGAATCAAACATGAGGATGGGC
TCAGTTATCAGCAATGCATCTAACTCTTCATTCATCTTTCGCTCCTAGAA
AATACTATTCATCAACAAATATCTTGTCAATAAAAATTTGTCAGCAAGTA
AAAGCGATTCTTTCGTCCCTTTTACAGGATCGAAGAATGACAGCCTTCTT
GACATCAAAGAATCAAACATGAGGATGGGCTCAGTTATCAGCAATGCATC
CAACTCTTCATTNAAGTTTTCTTTACATCAACGACGATACAGGATCGAAG
AATGACAGCCTTCTTGACATCAAAGAATCAAACATGAGGATGGGCTCAGT
TATCAGCAATGCATCTAACTCTTCATTCATCTTTCGCTCTTAGAAAATAC
TATTCATCAACAAATATCTTGTCAATAAAAATTTGTCAGCAAGTAAAAGC
GATTCTTTCGTCCCTTTTTGCCGACGAATGTTTTACTGATGAGACAGTGA
GTCAGAGAGTTTCCATTGGCAAATTTCCGGAGCTGCTGTTAAACTAATAA
TACTTATTGAAGGAATactttttttgttgaatttctctttaagagaaaac
ctggttatcaaactagtAGTTGTCTTTCCAAGTGTTTCTCGTTGTAATGA
AATTATTACGCTTTGTTTCAAATAAATGAACTTTCTTCTCAAATTTAGAA
AGAATATGATTACAATATTGAAAACATAACAGATCAAAAATGAAGATATA
ATCGTCTTTATTCGTGATACATTAATTTTACTCCCATCGGTAAACCATGT
TTGTAAATTCCATTCCAACCAGGTACGGAC
Run BLAST on NCBI

transcript from alignment at sc0000080:288243..290777+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007822 ID=TCONS_00007822|Name=TCONS_00007822|organism=Clytia hemisphaerica|type=transcript|length=2535bp|location=Sequence derived from alignment at sc0000080:288243..290777+ (Clytia hemisphaerica)
ATAATTGTGGCGAGTGCGTGATTTTTGGCTAAGTAAAGAATAATACACTG CTTATTTATCATGAACAAAAATAAACGATTGGTATCTGTTTATGTTTTAC CGCCCGGCTCAAAACCGATTGTCCGGGTTGAATGTCCGGAACAGTCGATT GAAGCACAACGATTGTTTAAATTATGTTGTGATACTATTCAGTTGTATGA AAGCAGTCGAAGATTTTTCGGATTATTTCGTGGTTTATTACACCCGGTGA AAAAATACGGAGACAGTGAACTAATTATGTTACCCGTCAAAACATACCCT ATTTCCATACAGAAATGGTCTTTCGATATCATTCAAGAATGTAGGCTAAT CAAAACAGATCCAATCGCTATCAGACTGCTTGCTCTACAGTACAAATGTG ATTTAGAAATGAAACGAAAACATCCAACCAAGGAACAGTTAACAGACTTA AAATCTTTCGAGGACCCAGAATTCACTTGTTATAAACAGTATTTGGATTG TGCAAGAAGAATCCTTGATTACACGTGGACAGTCGTTTTGGGAGTGGAAG TTGTCCAAAAAGTCAAACTGGTGACAAATATTCTGCAGAAAGGAAGCAAA GTGGATTTGGCGTGCACGCCCAAGAAATTGATCATTATCGGGCGTATGTA ATCCCTACCTTTCTTGGGGTATATTATAGAGGGGGTCTGATCTGGGAGCA TGAAGTCAGGGGAGTCGACATTTTTTAATCTTGTGTTTGGGGTATAAATA ACCTTTTTTTCGAATTGAGATGCTCTTGCTTTGCTTTACTAATTAAGTTG AAAGtgattgtcaacaacaacaaagtgcTTTTGCTTTACTTTAGAAAGAT TTTNGAAAAtgattgtcaacaacaacaaagtgcTTTTGCTTTACTTCAGA AAGATTTTTAGTAGCATAAAATTCGCTGCACTTCAGTTAATTATCACGTT TAAATTTGGCAAGTCAGTTTGTAATTAAATAGGCTTTTGTGAAGTGgaaa tttttactttgaattatttttggcGACTTTTTTGCTTTCTTGTTACAGAA TCATTTGATCTAGCAATCCCTTGGCGAAAGATTCGACGTTTTGCTGAAAT TAACGAAACAAAAACAATCAGTGTTGAAATTTTACTGGAAAGCAAAAACT TCACTTGGATCGAGTTCAAGACAATACAAGGAGTTTATCTTCTCCAAGTG CTGGCTGAATACATTGAGACAATGAACGTTAAGTTACAACCACCGGTTTT CAAGCAACCTAAATTCGTtcttgatgaagaagaagaaccaAAGAAGAAAA TCACATTCACCATGCTGAAAGAAGAATTATTCGGTGCCggcaaaaagaag aaagaagaggaTAAAACATTCTATCAAGATTTCGATGCTATTGATgtggt gacgtcatcagatgaaaacgaaagtgaaagtgaggAGGATGAgatttcaa tgacgtcatcatcgaGAAGAAGCTCCATAACGAGTCAGTTTTCAGCCAAG AAATATTTGACGGCTGATGATGGTCAAAAACCAGGACCATCGAATACTCC CGACCGCGTCTCCAAGAAAACTGAAAGTCTCCAAAGTGCTAAATCAGTAA GAAATGAAGGGAGTTTGCTTGCAGTCCAAAATGACAACACTCTGAAAGAT ACTGAATCCACATCAGCAGGTGGAAGTTTTCTTTACATCAACGACGATAC AGGATCGAAGAATGACAGCCTTCTTGACATCAACGAATCAAACATGAGGA TGGGCTCAGTTATCAGCAATGCATCTAACTCTTCATTCATCTTTCGCTCC TAGAAAATACTATTCATCAACAAATATCTTGTCAATAAAAATTTGTCAGC AAGTAAAAGCGATTCTTTCGTCCCTTTTACAGGATCGAAGAATGACAGCC TTCTTGACATCAAAGAATCAAACATGAGGATGGGCTCAGTTATCAGCAAT GCATCCAACTCTTCATTNAAGTTTTCTTTACATCAACGACGATACAGGAT CGAAGAATGACAGCCTTCTTGACATCAAAGAATCAAACATGAGGATGGGC TCAGTTATCAGCAATGCATCTAACTCTTCATTCATCTTTCGCTCTTAGAA AATACTATTCATCAACAAATATCTTGTCAATAAAAATTTGTCAGCAAGTA AAAGCGATTCTTTCGTCCCTTTTTGCCGACGAATGTTTTACTGATGAGAC AGTGAGTCAGAGAGTTTCCATTGGCAAATTTCCGGAGCTGCTGTTAAACT AATAATACTTATTGAAGGAATactttttttgttgaatttctctttaagag aaaacctggttatcaaactagtAGTTGTCTTTCCAAGTGTTTCTCGTTGT AATGAAATTATTACGCTTTGTTTCAAATAAATGAACTTTCTTCTCAAATT TAGAAAGAATATGATTACAATATTGAAAACATAACAGATCAAAAATGAAG ATATAATCGTCTTTATTCGTGATACATTAATTTTACTCCCATCGGTAAAC CATGTTTGTAAATTCCATTCCAACCAGGTACGGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004440XLOC_004440Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007822-exon-sc0000080-1491911889:288243..288885TCONS_00007822-exon-sc0000080-1491911889:288243..288885Clytia hemisphaericaexon
TCONS_00007822-exon-sc0000080-1510915933:288243..288885TCONS_00007822-exon-sc0000080-1510915933:288243..288885Clytia hemisphaericaexon
TCONS_00007822-exon-sc0000080-1575043694:288243..288885TCONS_00007822-exon-sc0000080-1575043694:288243..288885Clytia hemisphaericaexon
TCONS_00007822-exon-sc0000080-1491911889:289291..290777TCONS_00007822-exon-sc0000080-1491911889:289291..290777Clytia hemisphaericaexon
TCONS_00007822-exon-sc0000080-1510915933:289291..290777TCONS_00007822-exon-sc0000080-1510915933:289291..290777Clytia hemisphaericaexon
TCONS_00007822-exon-sc0000080-1575043694:289291..290777TCONS_00007822-exon-sc0000080-1575043694:289291..290777Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000080supercontigsc0000080:288243..290777 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0 0 0.0354635 0.174161 0.534783 0.550233 0.00138533 0.991097 0.161978 0.10395 0 0 0 0.581599 0 0.133778 0 0.606509 0.367803 0.358374 0.438639 0.924983 0 0 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00007822 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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